CX077104

Overview
NameCX077104
Unique NameCX077104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length452
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_LOTJA (Putative membrane protein ycf1 OS=Lotus japonicus GN=ycf1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.057e-26
Identity = 72/162 (44.44%), Postives = 101/162 (62.35%), Query Frame = -2
Query:    2 SIQRGEMSLPILI--TKKKFAL------KELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFI--AKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGG--RVLDKNKNL 451
            SIQRGE+SL I++   +K   L      KE  + G+ IIEP RLS KN+ QFF+Y+   + L+HK+KR+I +R  EK  +DK+ F + I   + Q++T N+ K HY L+V E IL  +RRRELR LICFN ++ N M +  +F N  K     +V  KNK+L
Sbjct: 1579 SIQRGELSLDIMMIQNEKDSTLTGFRKKKEFIEKGIFIIEPVRLSRKNNEQFFMYETARLLLIHKSKRQINQRNPEKSDLDKQIFYKNIPPKRDQRITQNKEKKHYALVVIENILSARRRRELRILICFNPRSINSMPRKTIFDNENKINNCCQVFAKNKDL 1740          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_JASNU (Putative membrane protein ycf1 OS=Jasminum nudiflorum GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.057e-26
Identity = 72/178 (40.45%), Postives = 101/178 (56.74%), Query Frame = -2
Query:    2 SIQRGEMSLPILITKKKFALKELT--KGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKG--YVDKKDFDEFIAKHQKMTGN------------------------RNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVLDKNKNL 451
            S +RGE++  IL T+   + K+L   +  ++  EP RL  KN+GQF +YQ +GI+LVH NK +I  R+++K   Y  K +FDE I  H+++T N                         +KNH DLLVPE I   +RRR+LR L C NSKN+N + +NPVF N  K   + LD+ KNL
Sbjct: 1710 SAKRGELAFEILATRPIQSWKKLLLKRKELVFFEPIRLFGKNNGQFIMYQTIGISLVHNNKHEIQPRFRKKKKRYGSKTNFDESIPPHERITRNDERIPTNDEDEKRNKRLRINYERNADKNHLDLLVPENIFSFRRRRKLRILNCLNSKNRNDVDRNPVFCNE-KNSSQDLDREKNL 1886          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_PHAVU (Putative membrane protein ycf1 OS=Phaseolus vulgaris GN=ycf1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.514e-24
Identity = 67/163 (41.10%), Postives = 96/163 (58.90%), Query Frame = -2
Query:    5 SIQRGEMSLPILITKKKFAL----------KELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFI--AKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNG--KGGGRVLDKNKN 451
            SIQRGE+ L I+I + +  L           +L K  + +IEP RLS KN+ QF   + + ++L+HKNKRKI K+Y +K +V+KK F ++I   + QK+T    K   + LVPE IL  +RRRELR  IC    N+N + +N +F N    K G +VL K +N
Sbjct: 1544 SIQRGELGLDIMIIQNQKNLTLPGLSKNKNNKLRKKELFVIEPVRLSRKNNKQFLKSKTMDLSLIHKNKRKIDKKYLKKIHVNKKSFYKYITRTRDQKITEKNEKEILNFLVPENILSARRRRELRMRICLYPNNRNSIHRNTIFDNENKVKKGFQVLTKKRN 1706          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_LACSA (Putative membrane protein ycf1 OS=Lactuca sativa GN=ycf1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.601e-24
Identity = 64/139 (46.04%), Postives = 85/139 (61.15%), Query Frame = -2
Query:   38 IQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICF--NSKNQNGMQKNPVFFNNGK 448
            IQR EM L I+   +   L +L K G+LI+EP RLS+KNDGQFF+YQI+ I+LVHK+K +  +RYQ               K + +  N +K + DLLVPE IL  +RRRELR LI F  N KN  G+ +N + +N  K
Sbjct: 1543 IQRKEMDLGIM--SRNLNLTQLMKTGILILEPARLSLKNDGQFFMYQIISISLVHKSKYQSNQRYQ---------------KQENVAKNIDKKNSDLLVPEKILSSRRRRELRILISFNLNLKNNTGVDRNTLVYNENK 1664          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_AMBTC (Putative membrane protein ycf1 OS=Amborella trichopoda GN=ycf1 PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 5.601e-24
Identity = 66/152 (43.42%), Postives = 91/152 (59.87%), Query Frame = -2
Query:    2 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGK--GGGRVLDKNKNL 451
            SIQRGEM L I++  K   L +L KGG+  +EP RLS K +GQF +YQ + I+LVHK K++  +RY+E  Y+D+  FD FI ++ ++  N +  +YDL VPE I   +RRRELR L   N    N    N +F N  K       LD+ K+L
Sbjct: 1593 SIQRGEMWLDIMLIHKDLPLTKLKKGGVFTMEPLRLSRKWNGQFLMYQTLSISLVHKIKQQTDRRYRETKYIDENFFDLFIPRNGRVFVNGDNKNYDLFVPENISALRRRRELRILSRLNPGKGN---INIIFSNRKKIQNCKPFLDRGKHL 1741          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_RANMC (Putative membrane protein ycf1 OS=Ranunculus macranthus GN=ycf1 PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 6.847e-22
Identity = 57/135 (42.22%), Postives = 81/135 (60.00%), Query Frame = -2
Query:   47 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN 451
            SIQR EMS+ +++  K     +L K  +L+IEP RLS+  DG F +YQ + I  VH +K +  K+   K  VD K   E +A+H+ +  NR+KN+YD L+PE +L  +RRRELR  IC N +N     +N  F N
Sbjct: 1591 SIQRDEMSMDVMLVPKATTFIKLRKRRLLLIEPARLSINWDGLFIMYQTLVILQVHNSKYQTCKK---KINVDNKGLIESMARHEILFRNRDKNNYDFLIPENLLSSRRRRELRIQICLNLRNFKVGDRNREFSN 1722          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_EPIVI (Putative membrane protein ycf1 OS=Epifagus virginiana GN=ycf1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.398e-21
Identity = 58/138 (42.03%), Postives = 82/138 (59.42%), Query Frame = -2
Query:   38 SIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGK 451
            SI + E++L I+  +K   L EL K G+LIIE  R S K  GQF +YQ +GI+L++KNK++  K+YQ++ Y  KK                    ++LL PE IL  +RR++LR LIC NSKN N +  NP+F+N  K
Sbjct: 1552 SIHKREINLDIIPIRKNLILTELIKNGVLIIETIRFSRKY-GQFSMYQTIGISLINKNKQQTNKKYQDQIYFSKK------------------KKFNLLFPENILSFRRRKKLRILICLNSKNVNDIDINPIFWNEKK 1670          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_IPOPU (Putative membrane protein ycf1 OS=Ipomoea purpurea GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.907e-20
Identity = 53/135 (39.26%), Postives = 80/135 (59.26%), Query Frame = -2
Query:   47 IQRGEMSLPILI-TKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN 448
            I+R ++ L ++  +K   ++ +  K   ++++   LSVKN+GQF +YQ +GI+LVHK+K K  ++Y++                Q++   R  NH+D LV E IL  +RRRELR LICFNS N N +  N VFFN
Sbjct: 1869 IERRKLQLNVMWKSKSNLSILKFFKSIGMVVDRLGLSVKNNGQFLMYQTIGISLVHKSKNKTNQQYRK----------------QRIIRARENNHFDALVLENILSSRRRRELRILICFNSNNWNDVDTNSVFFN 1987          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_CUSRE (Putative membrane protein ycf1 OS=Cuscuta reflexa GN=ycf1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.745e-17
Identity = 55/133 (41.35%), Postives = 76/133 (57.14%), Query Frame = -2
Query:   53 IQRGEMSLPILITKKK-FALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVF 448
            IQR + +L I+ T    F + E  K   L+++P  L +K +G+F LYQIVGI+LVHK+K +  + Y+++           I     MT N   NH D+LV E IL  + RRE RTLIC N KN NG+  N +F
Sbjct: 1563 IQRRKFNLRIMPTMTNLFNVPEFLKMTGLVMDPLPLLIKTNGKFLLYQIVGISLVHKSKHQTNQTYRKR-----------IIIRAGMT-NLENNHLDVLVLENILSSRCRREFRTLICLNYKNWNGVNTNSIF 1683          
BLAST of CX077104 vs. ExPASy Swiss-Prot
Match: YCF1_CUSEX (Putative membrane protein ycf1 OS=Cuscuta exaltata GN=ycf1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.745e-17
Identity = 52/133 (39.10%), Postives = 76/133 (57.14%), Query Frame = -2
Query:   53 IQRGEMSLPILITKKKFA-LKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVF 448
            IQR +++L I+ +      + E  K   L+++P  LS+K DG+F LY+IVGI+LVHK+K +  K+Y++   +   +                 NH D+LV E IL  + RRELRTLICFN KN NG+    +F
Sbjct: 1451 IQRRKLNLRIMPSMTNLLNVPEFLKRTGLVMDPLPLSIKTDGKFLLYKIVGISLVHKSKDQTNKKYRKTRIIRAVE----------------NNHLDVLVLENILSSRCRRELRTLICFNYKNWNGVNTTSIF 1567          
The following BLAST results are available for this feature:
BLAST of CX077104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
YCF1_LOTJA2.057e-2644.44Putative membrane protein ycf1 OS=Lotus japonicus ... [more]
YCF1_JASNU2.057e-2640.45Putative membrane protein ycf1 OS=Jasminum nudiflo... [more]
YCF1_PHAVU2.514e-2441.10Putative membrane protein ycf1 OS=Phaseolus vulgar... [more]
YCF1_LACSA5.601e-2446.04Putative membrane protein ycf1 OS=Lactuca sativa G... [more]
YCF1_AMBTC5.601e-2443.42Putative membrane protein ycf1 OS=Amborella tricho... [more]
YCF1_RANMC6.847e-2242.22Putative membrane protein ycf1 OS=Ranunculus macra... [more]
YCF1_EPIVI3.398e-2142.03Putative membrane protein ycf1 OS=Epifagus virgini... [more]
YCF1_IPOPU4.907e-2039.26Putative membrane protein ycf1 OS=Ipomoea purpurea... [more]
YCF1_CUSRE1.745e-1741.35Putative membrane protein ycf1 OS=Cuscuta reflexa ... [more]
YCF1_CUSEX1.745e-1739.10Putative membrane protein ycf1 OS=Cuscuta exaltata... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_54D07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-54D07-G14-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077104 ID=CX077104; Name=CX077104; organism=Citrus sinensis; type=EST; length=452bp
CAAGATTTTTGTTTTTATCCAAAACGCGGCCGCCGCCCTTTCCGTTATTA
AAAAATACTGGATTTTTCTGCATACCATTTTGATTCTTCGAATTGAAACA
AATTAGGGTTCTTAATTCTCTACGACGTTTAGGGAGTAAAATAGTTTCAG
GAACAAGCAAATCATAATGATTTTTGTTTCTATTTCCAGTCATTTTTTGA
TGTTTTGCAATGAATTCATCAAAATCTTTTTTATCAACATAGCCCTTTTC
TTGGTATCTTTTAGTAATTTTGCGCTTATTCTTATGAACCAATGCAATAC
CTACGATTTGATATAGAAAAAATTGTCCATCATTTTTTACAGACAAACGA
CGGGGTTCGATAATAAGCATTCCCCCTTTCGTCAATTCTTTAAGAGCGAA
CTTCTTCTTAGTGATCAAAATAGGCAGACTCATTTCTCCCCTTTGAATAG
AG
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