CN188581

Overview
NameCN188581
Unique NameCN188581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188581 vs. ExPASy Swiss-Prot
Match: EF1A_METST (Elongation factor 1-alpha OS=Methanosphaera stadtmanae (strain DSM 3091) GN=tuf PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.066e-64
Identity = 119/237 (50.21%), Postives = 165/237 (69.62%), Query Frame = 1
Query:    7 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVII 717
            F+KNMITG SQAD AVL++ +  G          QT+EH  L+ TLG+ Q+I   NKMD     YS+ +++E+ +E+ + +  VG+ P  VPF+P+S FEGDN+ E+S+N  WYKG TL+  LD ++EP +P D PLRLP+QDVY I G+GTVPVGR+ETG+LK    + F P+G+T EVKS+EMHHE L +A PGDNVGFNV+ V   D+KRG VA  +++ P+  A  F +Q+++
Sbjct:   88 FVKNMITGASQADAAVLVVAANDGIMP-------QTKEHIFLSRTLGINQLIIAINKMDVVD--YSEDKFNELKEELGALISTVGFKPSDVPFIPVSAFEGDNISEKSSNTPWYKGNTLVQELDALDEPDKPVDLPLRLPIQDVYSITGVGTVPVGRIETGILKTAENIAFEPAGVTGEVKSIEMHHEVLDKAEPGDNVGFNVRGVGKNDIKRGDVAGTTQNPPS-VAKEFKAQIVV 314          
BLAST of CN188581 vs. ExPASy Swiss-Prot
Match: EF1A_METB6 (Elongation factor 1-alpha OS=Methanoregula boonei (strain 6A8) GN=tuf PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.066e-64
Identity = 121/237 (51.05%), Postives = 162/237 (68.35%), Query Frame = 1
Query:    7 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVII 717
            F+KNMITG SQAD A+L++ +  G  E       QT+EH  LA TLG+ Q+I   NKMDA   K+ + R++E+ KE+S  +K VGY PE+  F+PIS  +G N+   S    WYKGP L+ ALD   EP +P+DKPLRLP+QD Y I GIGTVPVGRVETG++K GM V+F P+    E+KS+EMHHE + +A+PGDNVGFNV+ +A  D++RG V   + + P   A  FT+QV++
Sbjct:   98 FVKNMITGASQADAAILVVAAPDGVME-------QTKEHVFLARTLGITQIIIAINKMDAV--KFDEKRFNEVKKELSDLIKMVGYKPEETLFIPISSLQGINIKANSPETPWYKGPALIPALDTFKEPSKPTDKPLRLPIQDSYSISGIGTVPVGRVETGIMKKGMKVSFMPANKDGEIKSIEMHHEEIPQAVPGDNVGFNVRGIAKGDIRRGDVCGPA-EQPPTVADEFTAQVVV 324          
BLAST of CN188581 vs. ExPASy Swiss-Prot
Match: EF1A_METTH (Elongation factor 1-alpha OS=Methanobacterium thermoautotrophicum GN=tuf PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.004e-64
Identity = 119/237 (50.21%), Postives = 165/237 (69.62%), Query Frame = 1
Query:    7 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVII 717
            F+KNMITG SQAD AVL++    G          QT+EH  L+ TLG+ Q+I   NKMD     Y + +++ +  EV++ +K VGY P  V F+P+S FEGDN+  +S N  WYKG TL++ALD++  P++P D PLR+P+QDVY I G+GTVPVGRVETGVLK G  V F P+G++ EVKS+EMHHE +++A PGDN+GFNV+ V   D++RG VA +  D+P + A  FT+Q+++
Sbjct:   88 FVKNMITGASQADAAVLVVAVDDGVMP-------QTKEHVFLSRTLGINQLIVAINKMDLVN--YDEEKFNALKDEVAALIKTVGYKPSDVEFIPLSAFEGDNITSKSENTPWYKGKTLVEALDDLEAPEKPVDLPLRIPIQDVYSITGVGTVPVGRVETGVLKKGENVIFEPAGVSGEVKSIEMHHEMIEQAEPGDNIGFNVRGVGKNDIRRGDVAGH-LDNPPKVAKEFTAQIVV 314          
BLAST of CN188581 vs. ExPASy Swiss-Prot
Match: EF1A_METMA (Elongation factor 1-alpha OS=Methanosarcina mazei GN=tuf PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 6.830e-64
Identity = 116/237 (48.95%), Postives = 164/237 (69.20%), Query Frame = 1
Query:    7 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVII 717
            F+KNMITG SQAD AVL++ +  G          QT+EH  L+ TLG+ Q+I   NKMDA    YS+ARY E+V++VS  LK +G+ P ++PF+P S F GDN+++ S    WYKGP +++AL+++ EP++PS  PLR+P++D Y I GIGTVPVGRVETGV+K G  V F P G   EVKS+EMHHE + +A PGDN+G+NV+ +   D++RG V  ++ D+P + A  F  Q+++
Sbjct:   98 FVKNMITGASQADAAVLVVAAPDGVM-------AQTKEHIFLSRTLGINQLIVAINKMDAVD--YSEARYKEVVEQVSGILKMIGFKPSEIPFIPTSAFHGDNIMKLSDKTPWYKGPAIMEALNSLKEPEKPSTLPLRIPVEDAYTISGIGTVPVGRVETGVMKKGDKVVFMPGGAGGEVKSIEMHHEEIPQATPGDNIGWNVRGIGKNDVRRGDVCGHA-DNPPKVADEFVGQIVV 324          
BLAST of CN188581 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 8.921e-64
Identity = 120/237 (50.63%), Postives = 162/237 (68.35%), Query Frame = 1
Query:    7 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVII 717
            F+KNMITG SQAD  VL++ +  G          QT+EH  L+ TLG+ Q+I   NK+D     Y +A+++E+  EVS+ +K VG+NP  VPF+P+S FEGDN+ + S N  WYKG TL+ ALDN+  P++P   PLR+P+QDVY I G+GTVPVGRVETGV+K G  V F P+G + EVKS+EMHHE  + A PGDN+GFNV+ V   D++RG VA +  D PA  A  F +Q+++
Sbjct:   88 FVKNMITGASQADAGVLVVAADDGVMP-------QTKEHVFLSKTLGINQLIVAINKIDLVD--YDEAKFNELKDEVSALIKTVGFNPADVPFIPVSAFEGDNIKDASPNTSWYKGDTLMQALDNLAAPEKPVSLPLRIPIQDVYSITGVGTVPVGRVETGVMKKGENVIFEPAGASGEVKSIEMHHETFETAEPGDNIGFNVRGVGKNDIRRGDVAGHVDDAPA-VAKEFDAQIVV 314          
BLAST of CN188581 vs. ExPASy Swiss-Prot
Match: EF1A_THESM (Elongation factor 1-alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=tuf PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.522e-63
Identity = 125/245 (51.02%), Postives = 169/245 (68.98%), Query Frame = 1
Query:    7 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDP--AREAANFTSQVII 717
            F+KNMITG SQAD AVLI+ +T G          QT+EHA LA TLG+  +I   NKMDA   KY + R+ E+  +V+  L+ +GY  +  P +PIS +EGDN++++S  + WY GPTL++ALD I EP++P+DKPLR+P+QDVY I G+GTVPVGRVETGVLK G V+ F P+       +  EVKS+EMHHE++ EALPGDN+GFNV+ V   D+KRG VA ++ + P   R    F +Q+I+
Sbjct:   96 FVKNMITGASQADAAVLIVAATDGVMP-------QTKEHAFLARTLGINHIIVGVNKMDAV--KYDEKRFKEVATQVTKLLQMLGY--KNFPVIPISAWEGDNVVKKSDKMPWYNGPTLIEALDQIPEPEKPTDKPLRIPIQDVYSIKGVGTVPVGRVETGVLKVGDVIIFEPASTIFHKPIQGEVKSIEMHHESMPEALPGDNIGFNVRGVGKNDIKRGDVAGHTTNPPTVVRPRDTFKAQIIV 329          
BLAST of CN188581 vs. ExPASy Swiss-Prot
Match: EF1A_CENSY (Elongation factor 1-alpha OS=Cenarchaeum symbiosum GN=tuf PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.596e-63
Identity = 116/237 (48.95%), Postives = 162/237 (68.35%), Query Frame = 1
Query:    7 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVII 717
            FIKNMITG S+ADCA+L++ +  G  +  I+  GQ REHA L  TLGV Q+I   NKMD +  KYS+  Y + V++    +K VGY  E VPF+P+SG++GDN+++RS N+ WYKG TLL++ D+    ++P  KPLR+P+QDVY I G+GTVPVGRVETG +KPG  +   PSG   E+KS+E HH  +  A  GDN+GFN++ +  KD+KRG V  +   +P + A  F +Q+I+
Sbjct:  102 FIKNMITGASEADCAILVLSAKEGETDTAIAAGGQAREHAFLLKTLGVNQLIVAVNKMDDS--KYSEEAYKKTVEKGEGLVKSVGYKLENVPFIPVSGWKGDNLVKRSENMPWYKGKTLLESFDDFKMAEKPVGKPLRVPIQDVYTITGVGTVPVGRVETGTMKPGDKIVVMPSGAQGEIKSIETHHTEMPSAEAGDNIGFNLRGIEKKDIKRGDVLGDPA-NPPKVAKEFLAQIIV 335          
BLAST of CN188581 vs. ExPASy Swiss-Prot
Match: EF1A_METAC (Elongation factor 1-alpha OS=Methanosarcina acetivorans GN=tuf PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.427e-63
Identity = 115/237 (48.52%), Postives = 161/237 (67.93%), Query Frame = 1
Query:    7 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVII 717
            F+KNMITG SQAD A+L++ +  G          QT+EH  L+ TLG+ Q+I   NKMDA   +YS+A+Y E+V++VS  LK +G+ P  +PF+P S F GDN+ + S    WYKGP ++ ALD + EP++PS  PLR+P++D Y I GIGTVPVGRVETGV+K G  V F P G   EVKS+EMHHE + +A PGDN+G+NV+ +   D++RG V  ++ D+P + A  F  Q+++
Sbjct:   98 FVKNMITGASQADAAILVVAAPDGVM-------AQTKEHIFLSRTLGINQLIIAINKMDAV--EYSEAKYKEVVEQVSGLLKMIGFKPANIPFIPTSAFMGDNITKLSEKTPWYKGPVIMQALDELKEPEKPSTLPLRIPVEDAYTISGIGTVPVGRVETGVMKKGDKVIFMPGGAGGEVKSIEMHHEEIPQAYPGDNIGWNVRGIGKNDVRRGDVCGHT-DNPPKVADEFVGQIVV 324          
BLAST of CN188581 vs. ExPASy Swiss-Prot
Match: EF1A_ARCFU (Elongation factor 1-alpha OS=Archaeoglobus fulgidus GN=tuf PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.427e-63
Identity = 120/237 (50.63%), Postives = 162/237 (68.35%), Query Frame = 1
Query:    7 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVII 717
            FIKNMITG SQAD AVL++D              QTREH  LA TLG+ Q+I   NKMD     Y +  Y+   + VS  LK VGY  +++PF+P+S + GDN+ ++S    WY GPTLL+A D +  P++  DKPLR+P+QDVY I G+GTVPVGRVE+GVL+ G  V F P+G++ EVKS+EMHHE +QEA PGDN+GFNV+ V+ KD++RG VA +  D+P     +FT+Q+++
Sbjct:   98 FIKNMITGASQADAAVLVMDVVE-------KVQPQTREHIFLARTLGINQIIVAINKMDRVN--YDQKEYEAAKEAVSKLLKMVGYKVDEIPFIPVSAYYGDNVAKKSDKTPWYNGPTLLEAFDLLKPPEKLVDKPLRIPIQDVYSISGVGTVPVGRVESGVLRVGDKVVFEPAGVSGEVKSIEMHHEPIQEAYPGDNIGFNVRGVSKKDIRRGDVAGH-PDNPPTVVKDFTAQLVV 324          
BLAST of CN188581 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.552e-63
Identity = 117/237 (49.37%), Postives = 161/237 (67.93%), Query Frame = 1
Query:    7 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVII 717
            F+KNMITG SQAD A+L++ +  G  E       QT+EH  LA TLG+ Q++   NKMDA    Y + R++E+ KE++  +  VGY   ++ F+P+S F+G N+ ++S    WY GPTLL+ALD   EP +P+DKP RLP+QDVY I GIGTVPVGR+ETG++K GM V+F P+    E+KS+EMHHE   +ALPGDNVGFNV+ V   D++RG V   + D P   A  FT+Q+++
Sbjct:   98 FVKNMITGASQADAAILVVAAPDGVME-------QTKEHVFLARTLGITQLVIAINKMDAVN--YDQKRFEEVKKELTQLIGMVGYKAAEILFIPMSSFKGVNISKKSPETPWYTGPTLLEALDTFKEPDKPTDKPFRLPIQDVYSISGIGTVPVGRIETGIMKKGMKVSFMPANKDGEIKSIEMHHEEQPQALPGDNVGFNVRGVGKNDIRRGDVCGPA-DIPPTVADEFTAQIVV 324          
The following BLAST results are available for this feature:
BLAST of CN188581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_METST3.066e-6450.21Elongation factor 1-alpha OS=Methanosphaera stadtm... [more]
EF1A_METB63.066e-6451.05Elongation factor 1-alpha OS=Methanoregula boonei ... [more]
EF1A_METTH4.004e-6450.21Elongation factor 1-alpha OS=Methanobacterium ther... [more]
EF1A_METMA6.830e-6448.95Elongation factor 1-alpha OS=Methanosarcina mazei ... [more]
EF1A_METS38.921e-6450.63Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]
EF1A_THESM1.522e-6351.02Elongation factor 1-alpha OS=Thermococcus sibiricu... [more]
EF1A_CENSY2.596e-6348.95Elongation factor 1-alpha OS=Cenarchaeum symbiosum... [more]
EF1A_METAC4.427e-6348.52Elongation factor 1-alpha OS=Methanosarcina acetiv... [more]
EF1A_ARCFU4.427e-6350.63Elongation factor 1-alpha OS=Archaeoglobus fulgidu... [more]
EF1A_METPE7.552e-6349.37Elongation factor 1-alpha OS=Methanosphaerula palu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006F16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188581 ID=CN188581; Name=CN188581; organism=Citrus sinensis; type=EST; length=719bp
AGTGTTTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGC
TGTCCTCATCATTGACTCTACCACTGGTGGTTTTGAAGCTGGTATCTCCA
AGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTG
AAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAGTA
TTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGA
AGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGT
TTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAA
GGGTCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGC
CCTCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGT
GGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCC
TGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGT
CTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAAT
GTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTT
TGTTGCTTCCAACTCGAAGGATGATCCAGCCAGGGAAGCTGCCAACTTCA
CCTCACAGGTCATCATCAT
back to top