CN188581

Overview
NameCN188581
Unique NameCN188581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188581 vs. ExPASy Swiss-Prot
Match: EF1A_METBF (Elongation factor 1-alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=tuf PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.552e-63
Identity = 116/237 (48.95%), Postives = 161/237 (67.93%), Query Frame = 1
Query:    7 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVII 717
            F+KNMITG SQAD AVL++ +  G          QT+EH  L+ TLG+ Q+I   NKMDA   +YS+ RY E+V++VS  LK +G+ P  +PFVP S F GDN++  S    WYKG T+++AL+N+  P++PS  PLR+P++D Y I GIGTVPVGRVETG +K G  V F P G   EVKS+EMHHE + +ALPGDN+G+NV+ +   D++RG V  ++ D+P + A  F  Q+++
Sbjct:   98 FVKNMITGASQADAAVLVVAAPDGVM-------AQTKEHIFLSRTLGINQLIVAINKMDAV--EYSEKRYKEVVEQVSGILKMIGFKPGDIPFVPTSAFYGDNVVNHSEKTPWYKGVTMMEALNNLKVPEKPSTLPLRIPVEDAYTISGIGTVPVGRVETGTMKKGDKVVFMPGGAAGEVKSIEMHHEEIPQALPGDNIGWNVRGIGKADVRRGDVCGHT-DNPPKVADTFVGQIVV 324          
BLAST of CN188581 vs. ExPASy Swiss-Prot
Match: EF1A_PYRWO (Elongation factor 1-alpha OS=Pyrococcus woesei GN=tuf PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.682e-62
Identity = 123/245 (50.20%), Postives = 168/245 (68.57%), Query Frame = 1
Query:    7 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDP--AREAANFTSQVII 717
            F+KNMITG SQAD AVL++ +T G          QT+EHA LA TLG+K +I   NKMD     Y++ R++E+  +V   LK +GY  +  P +PIS +EG+N++++S  + WY GPTL++ALD I EP++P DKPLR+P+QDVY I G+GTVPVGRVETG L+ G VV F P+       +  EVKS+EMHHE L+EALPGDN+GFNV+ V+  D+KRG VA ++ + P   R    F +Q+I+
Sbjct:   98 FVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGIKHIIVAINKMDMVN--YNQKRFEEVKAQVEKLLKMLGY--KDFPVIPISAWEGENVVKKSDKMPWYNGPTLIEALDQIPEPEKPVDKPLRIPIQDVYSIKGVGTVPVGRVETGKLRVGEVVIFEPASTIFHKPIQGEVKSIEMHHEPLEEALPGDNIGFNVRGVSKNDIKRGDVAGHTTNPPTVVRTKDTFKAQIIV 331          
BLAST of CN188581 vs. ExPASy Swiss-Prot
Match: EF1A_PYRFU (Elongation factor 1-alpha OS=Pyrococcus furiosus GN=tuf PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.682e-62
Identity = 123/245 (50.20%), Postives = 168/245 (68.57%), Query Frame = 1
Query:    7 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDP--AREAANFTSQVII 717
            F+KNMITG SQAD AVL++ +T G          QT+EHA LA TLG+K +I   NKMD     Y++ R++E+  +V   LK +GY  +  P +PIS +EG+N++++S  + WY GPTL++ALD I EP++P DKPLR+P+QDVY I G+GTVPVGRVETG L+ G VV F P+       +  EVKS+EMHHE L+EALPGDN+GFNV+ V+  D+KRG VA ++ + P   R    F +Q+I+
Sbjct:   96 FVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGIKHIIVAINKMDMVN--YNQKRFEEVKAQVEKLLKMLGY--KDFPVIPISAWEGENVVKKSDKMPWYNGPTLIEALDQIPEPEKPVDKPLRIPIQDVYSIKGVGTVPVGRVETGKLRVGEVVIFEPASTIFHKPIQGEVKSIEMHHEPLEEALPGDNIGFNVRGVSKNDIKRGDVAGHTTNPPTVVRTKDTFKAQIIV 329          
BLAST of CN188581 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.197e-62
Identity = 119/238 (50.00%), Postives = 165/238 (69.33%), Query Frame = 1
Query:    7 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL-KKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVII 717
            FIKNMITG SQAD AVL+++      ++GI    QTREH  L  TLGV+Q+    NKMD  T  +S+A Y+E+ K +   L K +G+NPE++ FVP++   GDN+ ++S    WYKGPT+ + +D    P++P++ PLRLP+QDVY I G+GTVPVGRVETG++KPG  V F P+G   E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   A +FT+Q+++
Sbjct:   98 FIKNMITGASQADAAVLVVNVDDA--KSGIQP--QTREHVFLIRTLGVRQLAVAVNKMD--TVNFSEADYNELKKMIGDQLLKMIGFNPEQINFVPVASLHGDNVFKKSERTPWYKGPTIAEVIDGFQPPEKPTNLPLRLPIQDVYSITGVGTVPVGRVETGIIKPGDKVVFEPAGAIGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VATDFTAQIVV 328          
BLAST of CN188581 vs. ExPASy Swiss-Prot
Match: EF1A_METVA (Elongation factor 1-alpha OS=Methanococcus vannielii GN=tuf PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.895e-62
Identity = 119/238 (50.00%), Postives = 165/238 (69.33%), Query Frame = 1
Query:    7 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL-KKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVII 717
            FIKNMITG SQAD AVL+++      ++GI    QTREH  L  TLGV+Q+    NKMD  T  +S+A Y+E+ K +   L K +G+NPE++ FVP++   GDN+ ++S    WYKGPT+ + +D    P++P++ PLRLP+QDVY I G+GTVPVGRVETG++KPG  V F P+G   E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   A +FT+Q+++
Sbjct:   98 FIKNMITGASQADAAVLVVNVDDA--KSGIQP--QTREHVFLIRTLGVRQLAVAVNKMD--TVNFSEADYNELKKMIGDQLLKMIGFNPEQINFVPVASLHGDNVFKKSERNPWYKGPTIAEVIDGFQPPEKPTNLPLRLPIQDVYTITGVGTVPVGRVETGIIKPGDKVVFEPAGAIGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VATDFTAQIVV 328          
BLAST of CN188581 vs. ExPASy Swiss-Prot
Match: EF1A_PYRKO (Elongation factor 1-alpha OS=Pyrococcus kodakaraensis GN=tuf PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.424e-61
Identity = 122/245 (49.80%), Postives = 164/245 (66.94%), Query Frame = 1
Query:    7 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDP--AREAANFTSQVII 717
            F+KNMITG SQAD AVL++ +T G          QT+EHA LA TLG+  +I   NKMD     Y + ++ ++ ++V   L+ +GY  +  P +PIS +EGDN++++S  + WY GPTLL+ALD I EP +P DKPLR+P+QDVY I G+GTVPVGRVETGVL+ G VV F P+       +  EVKS+EMHHE LQEA PGDN+GFNV+ V   D+KRG VA ++ + P   R    F +Q+I+
Sbjct:   96 FVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGINHIIVAINKMDMVN--YDEKKFKQVAEQVKKLLQMLGY--KDFPIIPISAWEGDNVVKKSDKMPWYNGPTLLEALDQIPEPPKPVDKPLRIPIQDVYSIKGVGTVPVGRVETGVLRVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEAYPGDNIGFNVRGVGKNDIKRGDVAGHTTNPPTVVRPKDTFKAQIIV 329          
BLAST of CN188581 vs. ExPASy Swiss-Prot
Match: EF1A_METMP (Elongation factor 1-alpha OS=Methanococcus maripaludis GN=tuf PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.424e-61
Identity = 119/238 (50.00%), Postives = 163/238 (68.49%), Query Frame = 1
Query:    7 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL-KKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVII 717
            FIKNMITG SQAD AVL+++      ++GI    QTREH  L+ TLG+ Q+    NKMD  T  +S+A Y+E+ K +   L K VG+NP+ + F+P++   GDN+ ++S N  WY GPTL   +D    P++P+  PLRLP+QDVY I G+GTVPVGRVETG++KPG  V F P+G   E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q+++
Sbjct:   98 FIKNMITGASQADAAVLVVNVDDA--KSGIQP--QTREHVFLSRTLGITQLAVAINKMD--TVNFSEADYNEMKKMLGDQLLKMVGFNPDNIDFIPVASLLGDNVFKKSENTPWYNGPTLAQVIDGFQPPEKPTTLPLRLPIQDVYSITGVGTVPVGRVETGIIKPGDKVVFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVV 328          
BLAST of CN188581 vs. ExPASy Swiss-Prot
Match: EF1A_META3 (Elongation factor 1-alpha OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=tuf PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.424e-61
Identity = 120/238 (50.42%), Postives = 162/238 (68.07%), Query Frame = 1
Query:    7 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL-KKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVII 717
            FIKNMITG SQAD AVL+ D      +A      QTREH  L  TLGV Q+    NKMD  T  YS+  Y  +V  +S+ L K +GYNP  + FVP++ F GDN +++S  + WYKGPTL++ +D  N P++P++ PLR+P+QDVY I G+GTVPVGRVETGV+KPG  V F P+G++ E+K++E HHE L +A PGDNVGFNV+ V  KD+K+G V  +  + P   A  FT+Q+++
Sbjct:   98 FIKNMITGASQADAAVLVCDVN----DAKTGLQPQTREHIFLIRTLGVNQLAVAINKMD--TVDYSEEEYKAMVDMLSNQLLKMLGYNPANIHFVPVASFVGDNNVKKSDKMPWYKGPTLVEVIDTFNPPEKPTNLPLRMPIQDVYTITGVGTVPVGRVETGVMKPGDKVVFEPAGVSGEIKTIEAHHEQLPKAEPGDNVGFNVRGVGKKDIKKGDVLGHPDNIPT-VAEEFTAQIVV 328          
BLAST of CN188581 vs. ExPASy Swiss-Prot
Match: EF1A_THEGJ (Elongation factor 1-alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=tuf PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.860e-61
Identity = 123/245 (50.20%), Postives = 164/245 (66.94%), Query Frame = 1
Query:    7 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDP--AREAANFTSQVII 717
            F+KNMITG SQAD AVL++ +T G          QT+EHA LA TLG+  +I   NKMD     Y +  ++++  +V   LK +GY  +  P +PIS +EGDN++++S  + WYKGPTL++ALD I EP +P DKPLR+P+QDVY I G+GTVPVGRVETGVL+ G VV F P+       +  EVKS+EMHHE LQEA PGDN+GFNV+ V   D+KRG VA ++ + P   R    F +Q+I+
Sbjct:   96 FVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGINHIIVAINKMDMVN--YDQKVFEKVKAQVEKLLKMLGY--KDFPVIPISAWEGDNVVKKSDKMPWYKGPTLIEALDQIPEPPKPIDKPLRIPIQDVYSIKGVGTVPVGRVETGVLRVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEAYPGDNIGFNVRGVGKNDIKRGDVAGHTTNPPTVVRPKDTFKAQIIV 329          
BLAST of CN188581 vs. ExPASy Swiss-Prot
Match: EF1A_THEON (Elongation factor 1-alpha OS=Thermococcus onnurineus (strain NA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.429e-61
Identity = 121/245 (49.39%), Postives = 165/245 (67.35%), Query Frame = 1
Query:    7 FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDP--AREAANFTSQVII 717
            F+KNMITG SQAD AVL++ +T G          QT+EHA LA TLG+  +I   NKMD     Y + ++ ++ ++V   L  +GY  +  P +PIS +EGDN++++S  + WY GPTL++ALD I EP +P+DKPLR+P+QDVY I G+GTVPVGRVETGVL+ G VV F P+       +  EVKS+EMHHE +QEALPGDN+GFNV+ V   D+KRG VA ++ + P   R    F +Q+I+
Sbjct:   96 FVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGIGHIIVAINKMDMVD--YDEKKFKQVSEQVKKLLMMLGY--KDFPIIPISAWEGDNVVKKSDKMPWYNGPTLIEALDQIPEPPKPTDKPLRIPIQDVYSIKGVGTVPVGRVETGVLRVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPMQEALPGDNIGFNVRGVGKNDIKRGDVAGHTNNPPTVVRPKDTFKAQIIV 329          
The following BLAST results are available for this feature:
BLAST of CN188581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_METBF7.552e-6348.95Elongation factor 1-alpha OS=Methanosarcina barker... [more]
EF1A_PYRWO1.682e-6250.20Elongation factor 1-alpha OS=Pyrococcus woesei GN=... [more]
EF1A_PYRFU1.682e-6250.20Elongation factor 1-alpha OS=Pyrococcus furiosus G... [more]
EF1A_METVS2.197e-6250.00Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_METVA4.895e-6250.00Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_PYRKO1.424e-6149.80Elongation factor 1-alpha OS=Pyrococcus kodakaraen... [more]
EF1A_METMP1.424e-6150.00Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_META31.424e-6150.42Elongation factor 1-alpha OS=Methanococcus aeolicu... [more]
EF1A_THEGJ1.860e-6150.20Elongation factor 1-alpha OS=Thermococcus gammatol... [more]
EF1A_THEON2.429e-6149.39Elongation factor 1-alpha OS=Thermococcus onnurine... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188581 ID=CN188581; Name=CN188581; organism=Citrus sinensis; type=EST; length=719bp
AGTGTTTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGC
TGTCCTCATCATTGACTCTACCACTGGTGGTTTTGAAGCTGGTATCTCCA
AGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTG
AAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAGTA
TTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGA
AGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGT
TTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAA
GGGTCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGC
CCTCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGT
GGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCC
TGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGT
CTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAAT
GTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTT
TGTTGCTTCCAACTCGAAGGATGATCCAGCCAGGGAAGCTGCCAACTTCA
CCTCACAGGTCATCATCAT
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