CN188580

Overview
NameCN188580
Unique NameCN188580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188580 vs. ExPASy Swiss-Prot
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 3
Query:  144 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA----QSAMDGQELN 347
            TK+FVGGL + T DSSL++ F  FGDI EA VIT+R++GKSRG+GFVT     +A  A       +DG++ N
Sbjct:   11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKAN 82          
BLAST of CN188580 vs. ExPASy Swiss-Prot
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 3
Query:  144 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA----QSAMDGQELN 347
            TK+FVGGL + T DSSL++ F  FGDI EA VIT+R++GKSRG+GFVT     +A  A       +DG++ N
Sbjct:   11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKAN 82          
BLAST of CN188580 vs. ExPASy Swiss-Prot
Match: RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 3
Query:  144 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA----QSAMDGQELN 347
            TK+FVGGL + T DSSL++ F  FGDI EA VIT+R++GKSRG+GFVT     +A  A       +DG++ N
Sbjct:   11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKAN 82          
BLAST of CN188580 vs. ExPASy Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-B PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 3
Query:  144 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA----QSAMDGQELN 347
            TK+FVGGL + T DSSL++ F  FGDI EA VIT+R++GKSRG+GFVT     +A  A       +DG++ N
Sbjct:   11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKAN 82          
BLAST of CN188580 vs. ExPASy Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 3
Query:  144 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA----QSAMDGQELN 347
            TK+FVGGL + T DSSL++ F  FGDI EA VIT+R++GKSRG+GFVT     +A  A       +DG++ N
Sbjct:   11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKAN 82          
BLAST of CN188580 vs. ExPASy Swiss-Prot
Match: HNRGT_MACFA (RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis GN=RBMXL2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 3
Query:  147 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 374
            KLF+GGL+  TD+ +L+  F  +G I E  ++ +RE+ KSRGF FVT++S  +A +A   M+G+ L+G+ I+V+ A
Sbjct:    9 KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPANAKAAARDMNGKSLDGKAIKVAQA 84          
BLAST of CN188580 vs. ExPASy Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.417e-11
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 3
Query:  144 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA----QSAMDGQELN 347
            TK+FVGGL + T D+SL++ F  FGDI EA VIT+R++GKSRG+GFVT     +A  A       +DG++ N
Sbjct:   11 TKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPNPIIDGRKAN 82          
BLAST of CN188580 vs. ExPASy Swiss-Prot
Match: HNRGT_HUMAN (RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens GN=RBMXL2 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.417e-11
Identity = 33/76 (43.42%), Postives = 52/76 (68.42%), Query Frame = 3
Query:  147 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 374
            KLF+GGL+  TD+ +L+  F  +G I E  ++ +RE+ KSRGF FVT++S   A +A   M+G+ L+G+ I+V+ A
Sbjct:    9 KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIKVAQA 84          
BLAST of CN188580 vs. ExPASy Swiss-Prot
Match: NUCL_RAT (Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.850e-11
Identity = 42/113 (37.17%), Postives = 65/113 (57.52%), Query Frame = 3
Query:   54 CGKL---GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 383
            C K+   G  +R   Q P+ S  NA    SQ    LFV GLS  T + +LKE+F        A+++T+RE+G S+GFGFV ++S E A +A+ AM+  E++G  + + +A  +
Sbjct:  546 CNKMEIEGRTIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 651          
BLAST of CN188580 vs. ExPASy Swiss-Prot
Match: NUCL_MESAU (Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.850e-11
Identity = 42/113 (37.17%), Postives = 65/113 (57.52%), Query Frame = 3
Query:   54 CGKL---GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 383
            C K+   G  +R   Q P+ S  NA    SQ    LFV GLS  T + +LKE+F        A+++T+RE+G S+GFGFV ++S E A +A+ AM+  E++G  + + +A  +
Sbjct:  543 CNKMEIEGRTIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 648          
The following BLAST results are available for this feature:
BLAST of CN188580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RBM38_CHICK1.085e-1151.39RNA-binding protein 38 OS=Gallus gallus GN=RBM38 P... [more]
RBM24_XENTR1.085e-1151.39RNA-binding protein 24 OS=Xenopus tropicalis GN=rb... [more]
RBM24_CHICK1.085e-1151.39RNA-binding protein 24 OS=Gallus gallus GN=RBM24 P... [more]
RB24B_XENLA1.085e-1151.39RNA-binding protein 24-B OS=Xenopus laevis GN=rbm2... [more]
RB24A_XENLA1.085e-1151.39RNA-binding protein 24-A OS=Xenopus laevis GN=rbm2... [more]
HNRGT_MACFA1.085e-1143.42RNA-binding motif protein, X-linked-like-2 OS=Maca... [more]
RBM38_XENTR1.417e-1150.00RNA-binding protein 38 OS=Xenopus tropicalis GN=rb... [more]
HNRGT_HUMAN1.417e-1143.42RNA-binding motif protein, X-linked-like-2 OS=Homo... [more]
NUCL_RAT1.850e-1137.17Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3[more]
NUCL_MESAU1.850e-1137.17Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006F14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188580 ID=CN188580; Name=CN188580; organism=Citrus sinensis; type=EST; length=739bp
GCCGTAAATCCTTTGCTTCTGTTTCTCTTGCTTAAGAGACAAAAATGGCA
TTTTGTGGCAAACTTGGGATGCTAGTTAGGCAGAATGGCCAGGCTCCAAA
GGCATCTTTGATAAATGCGGTTCGATTCATGTCGCAATCACAAACTAAGC
TTTTTGTTGGAGGGCTATCTTGGGGAACCGATGACAGTTCTCTCAAGGAA
GCGTTTTCCAACTTTGGCGATATCACTGAAGCAAAGGTTATTACTGAGAG
AGAATCTGGGAAGTCAAGAGGATTTGGGTTCGTTACCTACGACTCTAATG
AATCTGCCAGCTCGGCACAGTCTGCAATGGATGGCCAGGAGCTAAATGGG
AGAAACATTCGGGTGTCTTTTGCCAATGACAGACCTCCTCGCTCTGACGG
TGGCTATGGTGGAGGGAATGATGGATCTTATGGCGGCAACCGTGGCGGTT
ACAGAGTCAACTACAGAGGAGGGGATGATGGTTTTTAAGGGGATTCTATT
CAATTTTTGGGCGTGCTTTAACTAGGAATTAAAGTTTTATGTTTGTTTTA
AGGATGGAAGTTTAGCACTACTGAATTTGTTATTATGTTGGCTTTTATTT
ATCAGCCTTGCCCCCTTAATTGCATATTATATAGCTATGCAGGCCAGGTA
AGATGTTTGACACTGCTATGCGTCCGTCATTTGTTTGACATTTTTTCGGT
CATGGTTAAAACATATTAATGGTTTGTTGAAAAAAAAAA
back to top