CN181483
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_ORYSJ (Proliferating cell nuclear antigen OS=Oryza sativa subsp. japonica GN=Os02g0805200 PE=2 SV=2) HSP 1 Score: 185.267 bits (469), Expect = 7.106e-48 Identity = 88/101 (87.13%), Postives = 95/101 (94.06%), Query Frame = 3 Query: 39 FSLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEYHA 341 FSLQ+MDSSHVALVALLLRSEGFEHYRCDRN+SMGMNLNN++KML+CAGNDDIIT+KADDGSDT T MFESP QDKIADFEMKLMDID EHLGIP +EY A Sbjct: 35 FSLQAMDSSHVALVALLLRSEGFEHYRCDRNLSMGMNLNNMAKMLRCAGNDDIITIKADDGSDTVTFMFESPNQDKIADFEMKLMDIDSEHLGIPDSEYQA 135 HSP 2 Score: 26.9498 bits (58), Expect = 7.106e-48 Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 2 Query: 8 DANFDCSATGF 40 DANFDCS TGF Sbjct: 25 DANFDCSGTGF 35
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA2_DAUCA (Proliferating cell nuclear antigen large form OS=Daucus carota PE=2 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 4.904e-46 Identity = 83/101 (82.18%), Postives = 92/101 (91.09%), Query Frame = 3 Query: 39 FSLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEYHA 341 FSLQ+MDSSHVALVA+LLRSEGFEHYRCDRNISMGMNL N++KML+CAGNDDI+T+KADD D T MFESPTQDKI+DFEMKLMDID EHLGIP +EY A Sbjct: 35 FSLQAMDSSHVALVAVLLRSEGFEHYRCDRNISMGMNLGNMAKMLRCAGNDDIVTMKADDDGDVITFMFESPTQDKISDFEMKLMDIDSEHLGIPESEYEA 135 HSP 2 Score: 29.261 bits (64), Expect = 4.904e-46 Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = 2 Query: 5 NDANFDCSATGF 40 NDANFDCSA+GF Sbjct: 24 NDANFDCSASGF 35
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_COTJA (Proliferating cell nuclear antigen OS=Coturnix coturnix japonica GN=PCNA PE=2 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 3.913e-36 Identity = 69/98 (70.41%), Postives = 87/98 (88.78%), Query Frame = 3 Query: 42 SLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEY 335 SLQSMDSSHV+LV L LRSEGF+ YRCDRNI+MG+NLN++SK+LKCAGN+DIITL+A+D +DT L+FE+P Q+K++D+EMKLMD+D E LGIP EY Sbjct: 36 SLQSMDSSHVSLVQLTLRSEGFDTYRCDRNIAMGVNLNSMSKILKCAGNEDIITLRAEDNADTLALVFETPNQEKVSDYEMKLMDLDVEQLGIPEQEY 133
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_CHICK (Proliferating cell nuclear antigen OS=Gallus gallus GN=PCNA PE=1 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 3.913e-36 Identity = 69/98 (70.41%), Postives = 87/98 (88.78%), Query Frame = 3 Query: 42 SLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEY 335 SLQSMDSSHV+LV L LRSEGF+ YRCDRNI+MG+NLN++SK+LKCAGN+DIITL+A+D +DT L+FE+P Q+K++D+EMKLMD+D E LGIP EY Sbjct: 36 SLQSMDSSHVSLVQLTLRSEGFDTYRCDRNIAMGVNLNSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEY 133
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_RAT (Proliferating cell nuclear antigen OS=Rattus norvegicus GN=Pcna PE=1 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 7.380e-35 Identity = 66/98 (67.35%), Postives = 86/98 (87.76%), Query Frame = 3 Query: 42 SLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEY 335 +LQSMDSSHV+LV L LRSEGF+ YRCDRN++MG+NL ++SK+LKCAGN+DIITL+A+D +DT L+FE+P Q+K++D+EMKLMD+D E LGIP EY Sbjct: 36 NLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEY 133
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_MOUSE (Proliferating cell nuclear antigen OS=Mus musculus GN=Pcna PE=1 SV=2) HSP 1 Score: 145.591 bits (366), Expect = 7.380e-35 Identity = 66/98 (67.35%), Postives = 86/98 (87.76%), Query Frame = 3 Query: 42 SLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEY 335 +LQSMDSSHV+LV L LRSEGF+ YRCDRN++MG+NL ++SK+LKCAGN+DIITL+A+D +DT L+FE+P Q+K++D+EMKLMD+D E LGIP EY Sbjct: 36 NLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEY 133
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_MACFA (Proliferating cell nuclear antigen OS=Macaca fascicularis GN=PCNA PE=2 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 7.380e-35 Identity = 66/98 (67.35%), Postives = 86/98 (87.76%), Query Frame = 3 Query: 42 SLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEY 335 +LQSMDSSHV+LV L LRSEGF+ YRCDRN++MG+NL ++SK+LKCAGN+DIITL+A+D +DT L+FE+P Q+K++D+EMKLMD+D E LGIP EY Sbjct: 36 NLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEY 133
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_HUMAN (Proliferating cell nuclear antigen OS=Homo sapiens GN=PCNA PE=1 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 7.380e-35 Identity = 66/98 (67.35%), Postives = 86/98 (87.76%), Query Frame = 3 Query: 42 SLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEY 335 +LQSMDSSHV+LV L LRSEGF+ YRCDRN++MG+NL ++SK+LKCAGN+DIITL+A+D +DT L+FE+P Q+K++D+EMKLMD+D E LGIP EY Sbjct: 36 NLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEY 133
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_CRIGR (Proliferating cell nuclear antigen OS=Cricetulus griseus GN=PCNA PE=2 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 7.380e-35 Identity = 66/98 (67.35%), Postives = 86/98 (87.76%), Query Frame = 3 Query: 42 SLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEY 335 +LQSMDSSHV+LV L LRSEGF+ YRCDRN++MG+NL ++SK+LKCAGN+DIITL+A+D +DT L+FE+P Q+K++D+EMKLMD+D E LGIP EY Sbjct: 36 NLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEY 133
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_BOVIN (Proliferating cell nuclear antigen OS=Bos taurus GN=PCNA PE=2 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 7.380e-35 Identity = 66/98 (67.35%), Postives = 86/98 (87.76%), Query Frame = 3 Query: 42 SLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEY 335 +LQSMDSSHV+LV L LRSEGF+ YRCDRN++MG+NL ++SK+LKCAGN+DIITL+A+D +DT L+FE+P Q+K++D+EMKLMD+D E LGIP EY Sbjct: 36 NLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEY 133 The following BLAST results are available for this feature:
BLAST of CN181483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181483 ID=CN181483; Name=CN181483; organism=Citrus sinensis; type=EST; length=341bpback to top |