CN181483

Overview
NameCN181483
Unique NameCN181483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5956 contig Csv1_Contig5956:138..477. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_ANGJA (Proliferating cell nuclear antigen OS=Anguilla japonica GN=pcna PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.783e-34
Identity = 65/98 (66.33%), Postives = 86/98 (87.76%), Query Frame = 3
Query:   42 SLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEY 335
            SLQSMDSSHV+LV L LRS+GF+ YRCDRN+++G++LN++SKMLKCAGN+DIITL+A+D +DT  L+FE+  Q+K++D+EMKLMD+D E LGIP  EY
Sbjct:   36 SLQSMDSSHVSLVQLTLRSDGFDSYRCDRNLALGVSLNSMSKMLKCAGNEDIITLRAEDNADTLALVFETLNQEKVSDYEMKLMDLDVEQLGIPEQEY 133          
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_SARCR (Proliferating cell nuclear antigen OS=Sarcophaga crassipalpis GN=PCNA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.818e-33
Identity = 62/107 (57.94%), Postives = 84/107 (78.50%), Query Frame = 3
Query:   15 TLTARPPAFSLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEY 335
            T         LQ+MD+SHV+L +L LRS+GF+ +RCDRNISMGMNL +++K+LKCA NDD +T+KA D +DT T MFESP  +K++D+EMKLM++D+EHLGIP  +Y
Sbjct:   27 TFECSESGIQLQAMDNSHVSLGSLTLRSDGFDKFRCDRNISMGMNLGSMAKILKCANNDDTVTVKAQDNADTVTFMFESPNHEKVSDYEMKLMNLDQEHLGIPETDY 133          
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_XENLA (Proliferating cell nuclear antigen OS=Xenopus laevis GN=pcna PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.374e-33
Identity = 64/98 (65.31%), Postives = 85/98 (86.73%), Query Frame = 3
Query:   42 SLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEY 335
            SLQSMDSSHV+LV L LRS+GF+ YRCDRN S+G+ ++++SK+LKCA +DDIITL+A+D +DT T++FESP Q+K++D+EMKLMD+D E LGIP  EY
Sbjct:   36 SLQSMDSSHVSLVQLTLRSDGFDTYRCDRNQSIGVKMSSMSKILKCAASDDIITLRAEDNADTVTMVFESPNQEKVSDYEMKLMDLDVEQLGIPEQEY 133          
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_HAPBU (Proliferating cell nuclear antigen OS=Haplochromis burtoni GN=pcna PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.374e-33
Identity = 64/98 (65.31%), Postives = 85/98 (86.73%), Query Frame = 3
Query:   42 SLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEY 335
            SLQSMDSSHV+LV L LR +GF+ YRCDRN++MG+NL+++SK+LKCAGN+DIITL+A+D +DT  L+FE+  Q+K++D+EMKLMD+D E LGIP  EY
Sbjct:   36 SLQSMDSSHVSLVQLTLRHDGFDSYRCDRNLAMGVNLSSMSKILKCAGNEDIITLRAEDNADTLALVFETLNQEKVSDYEMKLMDLDVEQLGIPEQEY 133          
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_DANRE (Proliferating cell nuclear antigen OS=Danio rerio GN=pcna PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 2.374e-33
Identity = 64/98 (65.31%), Postives = 85/98 (86.73%), Query Frame = 3
Query:   42 SLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEY 335
            SLQSMDSSHV+LV L LRS+GF+ YRCDRN++MG+NL+++SK+LKCAGN+DIITL+A+D +D   L+FE+  Q+K++D+EMKLMD+D E LGIP  EY
Sbjct:   36 SLQSMDSSHVSLVQLTLRSDGFDSYRCDRNLAMGVNLSSMSKILKCAGNEDIITLRAEDNADALALVFETLNQEKVSDYEMKLMDLDVEQLGIPEQEY 133          
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_DROME (Proliferating cell nuclear antigen OS=Drosophila melanogaster GN=mus209 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 6.907e-33
Identity = 60/107 (56.07%), Postives = 86/107 (80.37%), Query Frame = 3
Query:   15 TLTARPPAFSLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEY 335
            T         LQ+MD+SHV+LV+L LRS+GF+ +RCDRN+SMGMNL +++K+LKCA N+D +T+KA D +DT T+MFES  Q+K++D+EMKLM++D+EHLGIP  ++
Sbjct:   27 TFDCSDSGIQLQAMDNSHVSLVSLTLRSDGFDKFRCDRNLSMGMNLGSMAKILKCANNEDNVTMKAQDNADTVTIMFESANQEKVSDYEMKLMNLDQEHLGIPETDF 133          
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_SCHPO (Proliferating cell nuclear antigen OS=Schizosaccharomyces pombe GN=pcn1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.178e-32
Identity = 62/100 (62.00%), Postives = 86/100 (86.00%), Query Frame = 3
Query:   42 SLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEYHA 341
            SLQ+MDSSHVALV++L++S+GFE YRCDRNI++G+NLN +SK+L+CA N+D++TLKA+D  +   L+FES   D+I+D+++KLMDID+EHLGIP  EY A
Sbjct:   36 SLQAMDSSHVALVSMLIKSDGFEPYRCDRNIALGINLNALSKVLRCAQNEDLVTLKAEDTPEVLNLVFESEKNDRISDYDVKLMDIDQEHLGIPDIEYDA 135          
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_BOMMO (Proliferating cell nuclear antigen OS=Bombyx mori GN=PCNA PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.902e-31
Identity = 62/110 (56.36%), Postives = 82/110 (74.55%), Query Frame = 3
Query:    6 TMPTLTARPPAFSLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEY 335
            T  T         LQ+MD+SHV+LV+L LR++GF+ YRCDRNISMGMNL ++SK+L  AG+ D  T+KA D +D  T +FESP Q+K++D+EMKLM++D EHLGIP  EY
Sbjct:   24 TQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILIFAGDKDTATIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEY 133          
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_STYCL (Proliferating cell nuclear antigen OS=Styela clava GN=PCNA PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.103e-30
Identity = 59/98 (60.20%), Postives = 82/98 (83.67%), Query Frame = 3
Query:   42 SLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEY 335
            SLQ+MDSSHV+LV L LR++GFE++RCDRN++MG+N+ +++K++KCAGNDDIITL+A+D +D   L+FES   DK + +EMKLMD+D E LGIP  +Y
Sbjct:   36 SLQAMDSSHVSLVQLTLRADGFENFRCDRNLAMGINMTSMAKIMKCAGNDDIITLRAEDNADMLELIFESSKGDKYSQYEMKLMDLDCEQLGIPEQDY 133          
BLAST of CN181483 vs. ExPASy Swiss-Prot
Match: PCNA_DICDI (Proliferating cell nuclear antigen OS=Dictyostelium discoideum GN=pcna PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.141e-27
Identity = 56/105 (53.33%), Postives = 81/105 (77.14%), Query Frame = 3
Query:   30 PPAFSLQSMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKA-DDGSDTATLMFESPTQDKIADFEMKLMDIDREHLGIPHAEYHA 341
            P   SLQ+MD +HV L+ L+LR+EGFE Y CDR++S+G++L ++SK+LKCAGNDD +T++A D+ SDT T +FESP  D+++DFE+KL+DI  E   I  ++Y A
Sbjct:   32 PEGISLQAMDGTHVTLINLVLRNEGFETYNCDRSLSLGLSLVSLSKILKCAGNDDTLTIRARDNESDTVTFVFESPKNDRVSDFEIKLIDIKNEQYSIRKSDYSA 136          
The following BLAST results are available for this feature:
BLAST of CN181483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PCNA_ANGJA4.783e-3466.33Proliferating cell nuclear antigen OS=Anguilla jap... [more]
PCNA_SARCR1.818e-3357.94Proliferating cell nuclear antigen OS=Sarcophaga c... [more]
PCNA_XENLA2.374e-3365.31Proliferating cell nuclear antigen OS=Xenopus laev... [more]
PCNA_HAPBU2.374e-3365.31Proliferating cell nuclear antigen OS=Haplochromis... [more]
PCNA_DANRE2.374e-3365.31Proliferating cell nuclear antigen OS=Danio rerio ... [more]
PCNA_DROME6.907e-3356.07Proliferating cell nuclear antigen OS=Drosophila m... [more]
PCNA_SCHPO1.178e-3262.00Proliferating cell nuclear antigen OS=Schizosaccha... [more]
PCNA_BOMMO2.902e-3156.36Proliferating cell nuclear antigen OS=Bombyx mori ... [more]
PCNA_STYCL1.103e-3060.20Proliferating cell nuclear antigen OS=Styela clava... [more]
PCNA_DICDI1.141e-2753.33Proliferating cell nuclear antigen OS=Dictyosteliu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181483 ID=CN181483; Name=CN181483; organism=Citrus sinensis; type=EST; length=341bp
GAGGAACGATGCCAACTTTGACTGCTCGGCCACCGGCTTTCTCTCTTCAA
TCCATGGACTCCAGCCACGTGGCGCTGGTGGCCCTGCTGCTCAGATCGGA
AGGCTTCGAGCACTACCGCTGTGACCGGAATATCTCTATGGGAATGAATC
TCAATAACGTGTCCAAGATGCTTAAGTGTGCTGGCAACGATGACATCATC
ACTCTCAAGGCCGACGACGGCAGCGATACCGCTACTCTCATGTTTGAAAG
TCCCACTCAAGATAAGATTGCTGATTTTGAGATGAAACTGATGGACATTG
ATAGAGAGCATCTTGGTATACCGCATGCTGAATACCATGCC
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