CN188579

Overview
NameCN188579
Unique NameCN188579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.534e-18
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = -3
Query:  356 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 679
            G L+  N  AP+ S       + +   +++VG L W  D+  L++ FS  G + EA+V+ +RE+G+SRGFGFVT    +  + A SA+DGQ L GR IRV+ A +RPP
Sbjct:  218 GRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPP 325          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.028e-18
Identity = 42/79 (53.16%), Postives = 60/79 (75.95%), Query Frame = -3
Query:  362 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 598
            + FVGGL+W T + SL+ AF+++G+I ++KVIT+RE+G+SRGFGFVT+ S  S   A   M+G+EL+GRNI V+ A  R
Sbjct:    9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.873e-18
Identity = 40/79 (50.63%), Postives = 59/79 (74.68%), Query Frame = -3
Query:  362 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 598
            + FVGGL+W TD+ SL+ AFS FG++ ++K+I +RE+G+SRGFGFVT+   +S   A   M+GQ+L+GR+I V+ A  R
Sbjct:    9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.028e-17
Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = -3
Query:  359 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 679
            G L+  N  AP+ S         Q   +++VG + W  DD+ L++ FS  G +  A+V+ +RESG+SRGFGFVT  S    S A + +DGQ L+GR IRV+ A +RP
Sbjct:  165 GRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERP 271          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.028e-17
Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = -3
Query:  356 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 613
            S S  +L+VG LSWG DD +L+  F+  G + EA+VI +R+SG+S+GFGFVT  S++    A ++++G +L+GR IRVS A  RPP
Sbjct:  253 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPP 338          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.028e-17
Identity = 44/107 (41.12%), Postives = 66/107 (61.68%), Query Frame = -3
Query:  359 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 679
            G  +  N  AP+ S   A R   +   +++VG L W  D S L++ FS  G +  A+V+++RE+G+SRGFGFVT  S    + A +A+DGQ L+GR +RV+ A +RP
Sbjct:  123 GRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERP 229          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.028e-17
Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = -3
Query:  362 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 616
            MS+ + + FVGGL+W T+D  L+  FS FGD+ ++K+I +RESG+SRGFGFVT+   ++   A   M+G+EL+GR I V+ A  R
Sbjct:    1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.343e-17
Identity = 39/79 (49.37%), Postives = 59/79 (74.68%), Query Frame = -3
Query:  362 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 598
            + FVGGL+W TDD +L+ AFS +G++ ++K+I +RE+G+SRGFGFVT+   +S   A   M+GQ+L+GR+I V+ A  R
Sbjct:    9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.343e-17
Identity = 40/85 (47.06%), Postives = 60/85 (70.59%), Query Frame = -3
Query:  362 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 616
            MS+ + + FVGGL+W T D+ L+  FS FG++ ++K+I +RE+G+SRGFGFVT+   +S   A   M+G+EL+GR I V+ A  R
Sbjct:    1 MSEVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSR 85          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.754e-17
Identity = 42/82 (51.22%), Postives = 61/82 (74.39%), Query Frame = -3
Query:  371 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 616
            MS  + KLFVGGL++ TD+ +L++ FS+FG I+E  V+ +RE+ +SRGFGF+T+ + E AS A  AM+G+ L+GR IRV  A
Sbjct:    1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82          
The following BLAST results are available for this feature:
BLAST of CN188579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
ROC3_ARATH3.534e-1841.6731 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
GRPA_MAIZE6.028e-1853.16Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP2_SINAL7.873e-1850.63Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
ROC3_NICSY1.028e-1742.0628 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_ARATH1.028e-1748.8429 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_SPIOL1.028e-1741.1228 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
GRP8_ARATH1.028e-1748.24Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP1_SINAL1.343e-1749.37Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP10_BRANA1.343e-1747.06Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
RBM3_MOUSE1.754e-1751.22Putative RNA-binding protein 3 OS=Mus musculus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006F14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188579 ID=CN188579; Name=CN188579; organism=Citrus sinensis; type=EST; length=744bp
TTTTTTTTTTTTTTTTTCACAAACCATTAATATGTTTTAACCATGACCGC
CATATGTCAAACAAATGACGGACGCATAGCAGTGTCAAACCTCTTACCTG
GCCTGCATAGCTATATAATATGCAATTAAGGGGGCAAGGCTGATAAATAA
AAGCCAACATAATAACAAATTCAGTAGTGCTAAACTTCCATCCTTAAAAC
AAACATAAAACTTTAATTCCTAGTTAAAGCACGCCCAAAAATTGAATAGA
ATCCCCTTAAAAACCATCATCCCCTCCTCTGTAGTTGACTCTGTAACCGC
CACGGTTGCCGCCATAAGATCCATCATTCCCTCCACCATAGCCACCGTCA
GAGCGAGGAGGTCTGTCATTGGCAAAAGACACCCGAATGTTTCTCCCATT
TAGCTCCTGGCCATCCATTGCAGACTGTGCCGAGCTGGCAGATTCATTAG
AGTCGTAGGTAACGAACCCAAATCCTCTTGACTTCCCAGATTCTCTCTCA
GTAATAACCTTTGCTTCAGTGATATCGCCAAAGTTGGAAAACGCTTCCTT
GAGAGAACTGTCATCGGTTCCCCAAGATAGCCCTCCAACAAAAAGCTTAG
TTTGTGATTGCGACATGAATCGAACCGCATTTATCAAAGATGCCTTTGGA
GCCTGGCCATTCTGCCTAACTAGCATCCCAAGTTTGCCACAAAAATGCCA
TTTTTGTCTCTTAAGCAAGAGAAACAGAAGCAAAGGATTTGCCT
back to top