CN188579
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.534e-18 Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = -3 Query: 356 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 679 G L+ N AP+ S + + +++VG L W D+ L++ FS G + EA+V+ +RE+G+SRGFGFVT + + A SA+DGQ L GR IRV+ A +RPP Sbjct: 218 GRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPP 325
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.028e-18 Identity = 42/79 (53.16%), Postives = 60/79 (75.95%), Query Frame = -3 Query: 362 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 598 + FVGGL+W T + SL+ AF+++G+I ++KVIT+RE+G+SRGFGFVT+ S S A M+G+EL+GRNI V+ A R Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.873e-18 Identity = 40/79 (50.63%), Postives = 59/79 (74.68%), Query Frame = -3 Query: 362 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 598 + FVGGL+W TD+ SL+ AFS FG++ ++K+I +RE+G+SRGFGFVT+ +S A M+GQ+L+GR+I V+ A R Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.028e-17 Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = -3 Query: 359 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 679 G L+ N AP+ S Q +++VG + W DD+ L++ FS G + A+V+ +RESG+SRGFGFVT S S A + +DGQ L+GR IRV+ A +RP Sbjct: 165 GRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERP 271
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 1.028e-17 Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = -3 Query: 356 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 613 S S +L+VG LSWG DD +L+ F+ G + EA+VI +R+SG+S+GFGFVT S++ A ++++G +L+GR IRVS A RPP Sbjct: 253 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPP 338
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.028e-17 Identity = 44/107 (41.12%), Postives = 66/107 (61.68%), Query Frame = -3 Query: 359 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 679 G + N AP+ S A R + +++VG L W D S L++ FS G + A+V+++RE+G+SRGFGFVT S + A +A+DGQ L+GR +RV+ A +RP Sbjct: 123 GRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERP 229
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.028e-17 Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = -3 Query: 362 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 616 MS+ + + FVGGL+W T+D L+ FS FGD+ ++K+I +RESG+SRGFGFVT+ ++ A M+G+EL+GR I V+ A R Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.343e-17 Identity = 39/79 (49.37%), Postives = 59/79 (74.68%), Query Frame = -3 Query: 362 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 598 + FVGGL+W TDD +L+ AFS +G++ ++K+I +RE+G+SRGFGFVT+ +S A M+GQ+L+GR+I V+ A R Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.343e-17 Identity = 40/85 (47.06%), Postives = 60/85 (70.59%), Query Frame = -3 Query: 362 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 616 MS+ + + FVGGL+W T D+ L+ FS FG++ ++K+I +RE+G+SRGFGFVT+ +S A M+G+EL+GR I V+ A R Sbjct: 1 MSEVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSR 85
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.754e-17 Identity = 42/82 (51.22%), Postives = 61/82 (74.39%), Query Frame = -3 Query: 371 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 616 MS + KLFVGGL++ TD+ +L++ FS+FG I+E V+ +RE+ +SRGFGF+T+ + E AS A AM+G+ L+GR IRV A Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82 The following BLAST results are available for this feature:
BLAST of CN188579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188579 ID=CN188579; Name=CN188579; organism=Citrus sinensis; type=EST; length=744bpback to top |