CN188579
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.291e-17 Identity = 38/79 (48.10%), Postives = 59/79 (74.68%), Query Frame = -3 Query: 362 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 598 + FVGGL+W TDD +L+ AF+ +GD+ ++K+I +RE+G+SRGFGFVT+ ++ A M+GQ+L+GR+I V+ A R Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.992e-17 Identity = 42/82 (51.22%), Postives = 61/82 (74.39%), Query Frame = -3 Query: 371 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 616 MS + KLFVGGL++ TD+ +L++ FS+FG I+E V+ +RE+ +SRGFGF+T+ + E AS A AM+G+ L+GR IRV A Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA 82
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 5.103e-17 Identity = 41/82 (50.00%), Postives = 60/82 (73.17%), Query Frame = -3 Query: 371 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 616 MS + KLFVGGL++ TD+ +L++ FS+FG I+E V+ +RE+ +SRGFGF+T+ + E AS AM+G+ L+GR IRV A Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHA 82
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16 Identity = 38/79 (48.10%), Postives = 55/79 (69.62%), Query Frame = -3 Query: 362 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 598 +++VG + WG DD+ L++ FS G + A+V+ +RE+G+SRGFGFVT S S A + +DGQ L+GR IRV+ A DR Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDR 309
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16 Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = -3 Query: 362 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA----NDR 616 MS + KLFVGGL++ T + SL++ FS +G + E V+ +RES +SRGFGFVT+++ E A A AM+G+ ++GR IRV A NDR Sbjct: 1 MSCDEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQAGKSSNDR 89
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.643e-16 Identity = 39/82 (47.56%), Postives = 60/82 (73.17%), Query Frame = -3 Query: 371 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 616 M+ + KLFVGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A A AM+G+ ++GR IRV A Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.643e-16 Identity = 39/82 (47.56%), Postives = 60/82 (73.17%), Query Frame = -3 Query: 371 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 616 M+ + KLFVGGLS+ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A A AM+G+ ++GR IRV A Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15 Identity = 38/82 (46.34%), Postives = 60/82 (73.17%), Query Frame = -3 Query: 371 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 616 M+ + KLFVGGLS+ T++ +L++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A A AM+G+ ++GR IRV A Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15 Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = -3 Query: 362 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA----NDR 616 MS + KLFVGGLS+ TD+ L+ FS +G I E V+ +RE+ +SRGFGFVT+++ E A A + M+G+ ++GR IRV A NDR Sbjct: 1 MSCDEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQAGKSSNDR 89
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15 Identity = 38/82 (46.34%), Postives = 60/82 (73.17%), Query Frame = -3 Query: 371 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 616 M+ + KLFVGGLS+ T++ +L++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A A AM+G+ ++GR IRV A Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82 The following BLAST results are available for this feature:
BLAST of CN188579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188579 ID=CN188579; Name=CN188579; organism=Citrus sinensis; type=EST; length=744bpback to top |