CN188579

Overview
NameCN188579
Unique NameCN188579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.291e-17
Identity = 38/79 (48.10%), Postives = 59/79 (74.68%), Query Frame = -3
Query:  362 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 598
            + FVGGL+W TDD +L+ AF+ +GD+ ++K+I +RE+G+SRGFGFVT+   ++   A   M+GQ+L+GR+I V+ A  R
Sbjct:    9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.992e-17
Identity = 42/82 (51.22%), Postives = 61/82 (74.39%), Query Frame = -3
Query:  371 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 616
            MS  + KLFVGGL++ TD+ +L++ FS+FG I+E  V+ +RE+ +SRGFGF+T+ + E AS A  AM+G+ L+GR IRV  A
Sbjct:    1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA 82          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.103e-17
Identity = 41/82 (50.00%), Postives = 60/82 (73.17%), Query Frame = -3
Query:  371 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 616
            MS  + KLFVGGL++ TD+ +L++ FS+FG I+E  V+ +RE+ +SRGFGF+T+ + E AS    AM+G+ L+GR IRV  A
Sbjct:    1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHA 82          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16
Identity = 38/79 (48.10%), Postives = 55/79 (69.62%), Query Frame = -3
Query:  362 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 598
            +++VG + WG DD+ L++ FS  G +  A+V+ +RE+G+SRGFGFVT  S    S A + +DGQ L+GR IRV+ A DR
Sbjct:  231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDR 309          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.320e-16
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = -3
Query:  362 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA----NDR 616
            MS  + KLFVGGL++ T + SL++ FS +G + E  V+ +RES +SRGFGFVT+++ E A  A  AM+G+ ++GR IRV  A    NDR
Sbjct:    1 MSCDEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQAGKSSNDR 89          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.643e-16
Identity = 39/82 (47.56%), Postives = 60/82 (73.17%), Query Frame = -3
Query:  371 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 616
            M+  + KLFVGGLS+ T++ SL++ FS +G I+E  V+ +RE+ +SRGFGFVT+++ + A  A  AM+G+ ++GR IRV  A
Sbjct:    1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.643e-16
Identity = 39/82 (47.56%), Postives = 60/82 (73.17%), Query Frame = -3
Query:  371 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 616
            M+  + KLFVGGLS+ T++ SL++ FS +G I+E  V+ +RE+ +SRGFGFVT+++ + A  A  AM+G+ ++GR IRV  A
Sbjct:    1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15
Identity = 38/82 (46.34%), Postives = 60/82 (73.17%), Query Frame = -3
Query:  371 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 616
            M+  + KLFVGGLS+ T++ +L++ FS +G I+E  V+ +RE+ +SRGFGFVT+++ + A  A  AM+G+ ++GR IRV  A
Sbjct:    1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = -3
Query:  362 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA----NDR 616
            MS  + KLFVGGLS+ TD+  L+  FS +G I E  V+ +RE+ +SRGFGFVT+++ E A  A + M+G+ ++GR IRV  A    NDR
Sbjct:    1 MSCDEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQAGKSSNDR 89          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15
Identity = 38/82 (46.34%), Postives = 60/82 (73.17%), Query Frame = -3
Query:  371 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 616
            M+  + KLFVGGLS+ T++ +L++ FS +G I+E  V+ +RE+ +SRGFGFVT+++ + A  A  AM+G+ ++GR IRV  A
Sbjct:    1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
The following BLAST results are available for this feature:
BLAST of CN188579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
GRP7_ARATH2.291e-1748.10Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
RBM3_HUMAN2.992e-1751.22Putative RNA-binding protein 3 OS=Homo sapiens GN=... [more]
RBM3_RAT5.103e-1750.00Putative RNA-binding protein 3 OS=Rattus norvegicu... [more]
ROC4_NICSY4.320e-1648.1031 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
CIRBP_XENTR4.320e-1648.31Cold-inducible RNA-binding protein OS=Xenopus trop... [more]
CIRBP_PONAB5.643e-1647.56Cold-inducible RNA-binding protein OS=Pongo abelii... [more]
CIRBP_HUMAN5.643e-1647.56Cold-inducible RNA-binding protein OS=Homo sapiens... [more]
CIRBP_RAT1.257e-1546.34Cold-inducible RNA-binding protein OS=Rattus norve... [more]
CIRBP_RANCA1.257e-1548.31Cold-inducible RNA-binding protein OS=Rana catesbe... [more]
CIRBP_MOUSE1.257e-1546.34Cold-inducible RNA-binding protein OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188579 ID=CN188579; Name=CN188579; organism=Citrus sinensis; type=EST; length=744bp
TTTTTTTTTTTTTTTTTCACAAACCATTAATATGTTTTAACCATGACCGC
CATATGTCAAACAAATGACGGACGCATAGCAGTGTCAAACCTCTTACCTG
GCCTGCATAGCTATATAATATGCAATTAAGGGGGCAAGGCTGATAAATAA
AAGCCAACATAATAACAAATTCAGTAGTGCTAAACTTCCATCCTTAAAAC
AAACATAAAACTTTAATTCCTAGTTAAAGCACGCCCAAAAATTGAATAGA
ATCCCCTTAAAAACCATCATCCCCTCCTCTGTAGTTGACTCTGTAACCGC
CACGGTTGCCGCCATAAGATCCATCATTCCCTCCACCATAGCCACCGTCA
GAGCGAGGAGGTCTGTCATTGGCAAAAGACACCCGAATGTTTCTCCCATT
TAGCTCCTGGCCATCCATTGCAGACTGTGCCGAGCTGGCAGATTCATTAG
AGTCGTAGGTAACGAACCCAAATCCTCTTGACTTCCCAGATTCTCTCTCA
GTAATAACCTTTGCTTCAGTGATATCGCCAAAGTTGGAAAACGCTTCCTT
GAGAGAACTGTCATCGGTTCCCCAAGATAGCCCTCCAACAAAAAGCTTAG
TTTGTGATTGCGACATGAATCGAACCGCATTTATCAAAGATGCCTTTGGA
GCCTGGCCATTCTGCCTAACTAGCATCCCAAGTTTGCCACAAAAATGCCA
TTTTTGTCTCTTAAGCAAGAGAAACAGAAGCAAAGGATTTGCCT
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