CN188579
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15 Identity = 38/82 (46.34%), Postives = 60/82 (73.17%), Query Frame = -3 Query: 371 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 616 M+ + KLFVGGLS+ T++ +L++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A A AM+G+ ++GR IRV A Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15 Identity = 36/76 (47.37%), Postives = 57/76 (75.00%), Query Frame = -3 Query: 371 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 598 KLF+GGL++ T++ SL++ FS +G I+E V+ +RE+ +SRGFGFVT+++ + A A AM+G+ ++GR IRV A Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14 Identity = 35/76 (46.05%), Postives = 57/76 (75.00%), Query Frame = -3 Query: 371 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 598 KLF+GGL++ T++ L++AF+ +G I+E V+ +RE+ +SRGFGFVT+++ + A A AM+G+ ++GR IRV A Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12 Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = -3 Query: 356 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 607 S KL+V LSW L++AF++ AKVI +R SG+SRGFGF+T+ S E+ +SA M+ EL GR +R++ A + P Sbjct: 215 SPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKAP 298
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12 Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = -3 Query: 362 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 613 S LFVG L+ DD +L+ AF +F V+ + ++G SRG+GFV++ S + A +A +M GQ+LNGR +R+++A R Sbjct: 158 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12 Identity = 33/66 (50.00%), Postives = 49/66 (74.24%), Query Frame = -3 Query: 362 SSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 559 +SL AFS +G++ E+K+I +RE+ +SRGFGFVT+ + E+ SA M+G+EL+GRNI V+ A R Sbjct: 1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSR 66
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12 Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = -3 Query: 359 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 613 S +FVG LSW DD L + F +G I A+VI + +SG+S+G+G+V +++ E+A +A +A +E++GR + + +N RP Sbjct: 259 SNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRP 343
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: HNRPG_BOVIN (Heterogeneous nuclear ribonucleoprotein G OS=Bos taurus GN=RBMX PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12 Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = -3 Query: 371 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 598 KLF+GGL+ TD+ SL+ F +G I+E ++ +RE+ KSRGF F+T++S A +A M+G+ L+G+ I+V+ A Sbjct: 9 KLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQA 84
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=2 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11 Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = -3 Query: 398 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA----QSAMDGQELN 601 TK+FVGGL + T D+SL++ F FGDI EA VIT+R++GKSRG+GFVT +A A +DG++ N Sbjct: 32 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPNPIIDGRKAN 103
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11 Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = -3 Query: 398 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA----QSAMDGQELN 601 TK+FVGGL + T D+SL++ F FGDI EA VIT+R++GKSRG+GFVT +A A +DG++ N Sbjct: 34 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKAN 105 The following BLAST results are available for this feature:
BLAST of CN188579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188579 ID=CN188579; Name=CN188579; organism=Citrus sinensis; type=EST; length=744bpback to top |