CN188579

Overview
NameCN188579
Unique NameCN188579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15
Identity = 38/82 (46.34%), Postives = 60/82 (73.17%), Query Frame = -3
Query:  371 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 616
            M+  + KLFVGGLS+ T++ +L++ FS +G I+E  V+ +RE+ +SRGFGFVT+++ + A  A  AM+G+ ++GR IRV  A
Sbjct:    1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 36/76 (47.37%), Postives = 57/76 (75.00%), Query Frame = -3
Query:  371 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 598
            KLF+GGL++ T++ SL++ FS +G I+E  V+ +RE+ +SRGFGFVT+++ + A  A  AM+G+ ++GR IRV  A
Sbjct:    6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 35/76 (46.05%), Postives = 57/76 (75.00%), Query Frame = -3
Query:  371 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 598
            KLF+GGL++ T++  L++AF+ +G I+E  V+ +RE+ +SRGFGFVT+++ + A  A  AM+G+ ++GR IRV  A
Sbjct:    6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = -3
Query:  356 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 607
            S  KL+V  LSW      L++AF++      AKVI +R SG+SRGFGF+T+ S E+ +SA   M+  EL GR +R++ A  + P
Sbjct:  215 SPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKAP 298          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = -3
Query:  362 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 613
            S     LFVG L+   DD +L+ AF +F       V+ + ++G SRG+GFV++ S + A +A  +M GQ+LNGR +R+++A  R
Sbjct:  158 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 33/66 (50.00%), Postives = 49/66 (74.24%), Query Frame = -3
Query:  362 SSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 559
            +SL  AFS +G++ E+K+I +RE+ +SRGFGFVT+ + E+  SA   M+G+EL+GRNI V+ A  R
Sbjct:    1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSR 66          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = -3
Query:  359 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 613
            S     +FVG LSW  DD  L + F  +G I  A+VI + +SG+S+G+G+V +++ E+A +A +A   +E++GR + +  +N RP
Sbjct:  259 SNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRP 343          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: HNRPG_BOVIN (Heterogeneous nuclear ribonucleoprotein G OS=Bos taurus GN=RBMX PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = -3
Query:  371 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 598
            KLF+GGL+  TD+ SL+  F  +G I+E  ++ +RE+ KSRGF F+T++S   A +A   M+G+ L+G+ I+V+ A
Sbjct:    9 KLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQA 84          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = -3
Query:  398 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA----QSAMDGQELN 601
            TK+FVGGL + T D+SL++ F  FGDI EA VIT+R++GKSRG+GFVT     +A  A       +DG++ N
Sbjct:   32 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPNPIIDGRKAN 103          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = -3
Query:  398 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA----QSAMDGQELN 601
            TK+FVGGL + T D+SL++ F  FGDI EA VIT+R++GKSRG+GFVT     +A  A       +DG++ N
Sbjct:   34 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKAN 105          
The following BLAST results are available for this feature:
BLAST of CN188579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CIRBP_CRIGR1.257e-1546.34Cold-inducible RNA-binding protein OS=Cricetulus g... [more]
CIRBB_XENLA8.148e-1547.37Cold-inducible RNA-binding protein B OS=Xenopus la... [more]
CIRBA_XENLA5.281e-1446.05Cold-inducible RNA-binding protein A OS=Xenopus la... [more]
ROC5_NICSY1.301e-1242.8633 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
PUB1_YEAST4.943e-1239.29Nuclear and cytoplasmic polyadenylated RNA-binding... [more]
GRP1_SORBI4.943e-1250.00Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]
GAR2_SCHPO4.943e-1237.65Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 ... [more]
HNRPG_BOVIN6.456e-1243.42Heterogeneous nuclear ribonucleoprotein G OS=Bos t... [more]
RBM38_MOUSE1.101e-1150.00RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE... [more]
RBM38_HUMAN1.101e-1150.00RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188579 ID=CN188579; Name=CN188579; organism=Citrus sinensis; type=EST; length=744bp
TTTTTTTTTTTTTTTTTCACAAACCATTAATATGTTTTAACCATGACCGC
CATATGTCAAACAAATGACGGACGCATAGCAGTGTCAAACCTCTTACCTG
GCCTGCATAGCTATATAATATGCAATTAAGGGGGCAAGGCTGATAAATAA
AAGCCAACATAATAACAAATTCAGTAGTGCTAAACTTCCATCCTTAAAAC
AAACATAAAACTTTAATTCCTAGTTAAAGCACGCCCAAAAATTGAATAGA
ATCCCCTTAAAAACCATCATCCCCTCCTCTGTAGTTGACTCTGTAACCGC
CACGGTTGCCGCCATAAGATCCATCATTCCCTCCACCATAGCCACCGTCA
GAGCGAGGAGGTCTGTCATTGGCAAAAGACACCCGAATGTTTCTCCCATT
TAGCTCCTGGCCATCCATTGCAGACTGTGCCGAGCTGGCAGATTCATTAG
AGTCGTAGGTAACGAACCCAAATCCTCTTGACTTCCCAGATTCTCTCTCA
GTAATAACCTTTGCTTCAGTGATATCGCCAAAGTTGGAAAACGCTTCCTT
GAGAGAACTGTCATCGGTTCCCCAAGATAGCCCTCCAACAAAAAGCTTAG
TTTGTGATTGCGACATGAATCGAACCGCATTTATCAAAGATGCCTTTGGA
GCCTGGCCATTCTGCCTAACTAGCATCCCAAGTTTGCCACAAAAATGCCA
TTTTTGTCTCTTAAGCAAGAGAAACAGAAGCAAAGGATTTGCCT
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