CN188579

Overview
NameCN188579
Unique NameCN188579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = -3
Query:  356 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 613
            SQ    +FVG LS       +K AF+ FG I++A+V+ +  +GKS+G+GFV++ +   A +A   M GQ L GR IR ++A  +PP
Sbjct:  102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = -3
Query:  356 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 613
            SQ    +FVG LS       +K AF+ FG I++A+V+ +  +GKS+G+GFV++ +   A +A   M GQ L GR IR ++A  +PP
Sbjct:  102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = -3
Query:  398 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA----QSAMDGQELN 601
            TK+FVGGL + T DSSL++ F  FG+I EA VIT+R++GKSRG+GFVT     +A  A       +DG++ N
Sbjct:   11 TKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGRKAN 82          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: NUCL_PONAB (Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.204e-11
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = -3
Query:  362 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 679
            G  +R   Q P+ S  NA    SQ    LFV GLS  T + +LKE+F        A+++T+RE+G S+GFGFV ++S E A +A+ AM+  E++G  + + +A  +
Sbjct:  552 GRAIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 650          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: NUCL_MACFA (Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.204e-11
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = -3
Query:  362 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 679
            G  +R   Q P+ S  NA    SQ    LFV GLS  T + +LKE+F        A+++T+RE+G S+GFGFV ++S E A +A+ AM+  E++G  + + +A  +
Sbjct:  551 GRAIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 649          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: NUCL_HUMAN (Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.204e-11
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = -3
Query:  362 GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 679
            G  +R   Q P+ S  NA    SQ    LFV GLS  T + +LKE+F        A+++T+RE+G S+GFGFV ++S E A +A+ AM+  E++G  + + +A  +
Sbjct:  550 GRAIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 648          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.204e-11
Identity = 31/85 (36.47%), Postives = 50/85 (58.82%), Query Frame = -3
Query:  359 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 613
            ++    +FVG LSW  DD  LK+ F + G +  A+VI ER + +SRG+G+V +++   A  A   M G+E++GR I    +  +P
Sbjct:  164 TEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKP 248          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: RBM38_XENLA (RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = -3
Query:  398 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA----QSAMDGQELN 601
            TK+FVGGL + T D+SL++ F  FGDI EA VIT+R++ KSRG+GFVT     +A  A       +DG++ N
Sbjct:   11 TKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAERACKDPNPIIDGRKAN 82          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = -3
Query:  398 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA----QSAMDGQELN 601
            TK+FVGGL + T D+SL++ F  FG+I EA VIT+R++GKSRG+GFVT     +A  A       +DG++ N
Sbjct:   11 TKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKAN 82          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: HNRPG_PANTR (Heterogeneous nuclear ribonucleoprotein G OS=Pan troglodytes GN=RBMX PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = -3
Query:  371 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 598
            KLF+GGL+  T++ +L+  F  +G I E  ++ +RE+ KSRGF FVT++S   A  A   M+G+ L+G+ I+V  A
Sbjct:    9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
The following BLAST results are available for this feature:
BLAST of CN188579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
TIA1_MOUSE2.453e-1140.70Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
TIA1_HUMAN2.453e-1140.70Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
RBM24_DANRE2.453e-1150.00RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=... [more]
NUCL_PONAB3.204e-1137.74Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3[more]
NUCL_MACFA3.204e-1137.74Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3[more]
NUCL_HUMAN3.204e-1137.74Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3[more]
NSR1_YEAST3.204e-1136.47Nuclear localization sequence-binding protein OS=S... [more]
RBM38_XENLA7.138e-1148.61RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 ... [more]
RBM24_HUMAN7.138e-1148.61RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE... [more]
HNRPG_PANTR7.138e-1142.11Heterogeneous nuclear ribonucleoprotein G OS=Pan t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188579 ID=CN188579; Name=CN188579; organism=Citrus sinensis; type=EST; length=744bp
TTTTTTTTTTTTTTTTTCACAAACCATTAATATGTTTTAACCATGACCGC
CATATGTCAAACAAATGACGGACGCATAGCAGTGTCAAACCTCTTACCTG
GCCTGCATAGCTATATAATATGCAATTAAGGGGGCAAGGCTGATAAATAA
AAGCCAACATAATAACAAATTCAGTAGTGCTAAACTTCCATCCTTAAAAC
AAACATAAAACTTTAATTCCTAGTTAAAGCACGCCCAAAAATTGAATAGA
ATCCCCTTAAAAACCATCATCCCCTCCTCTGTAGTTGACTCTGTAACCGC
CACGGTTGCCGCCATAAGATCCATCATTCCCTCCACCATAGCCACCGTCA
GAGCGAGGAGGTCTGTCATTGGCAAAAGACACCCGAATGTTTCTCCCATT
TAGCTCCTGGCCATCCATTGCAGACTGTGCCGAGCTGGCAGATTCATTAG
AGTCGTAGGTAACGAACCCAAATCCTCTTGACTTCCCAGATTCTCTCTCA
GTAATAACCTTTGCTTCAGTGATATCGCCAAAGTTGGAAAACGCTTCCTT
GAGAGAACTGTCATCGGTTCCCCAAGATAGCCCTCCAACAAAAAGCTTAG
TTTGTGATTGCGACATGAATCGAACCGCATTTATCAAAGATGCCTTTGGA
GCCTGGCCATTCTGCCTAACTAGCATCCCAAGTTTGCCACAAAAATGCCA
TTTTTGTCTCTTAAGCAAGAGAAACAGAAGCAAAGGATTTGCCT
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