CN188579

Overview
NameCN188579
Unique NameCN188579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: HNRPG_HUMAN (Heterogeneous nuclear ribonucleoprotein G OS=Homo sapiens GN=RBMX PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = -3
Query:  371 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 598
            KLF+GGL+  T++ +L+  F  +G I E  ++ +RE+ KSRGF FVT++S   A  A   M+G+ L+G+ I+V  A
Sbjct:    9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: RMXL3_PANTR (RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes GN=RBMXL3 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 33/74 (44.59%), Postives = 50/74 (67.57%), Query Frame = -3
Query:  377 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVS 598
            KLFVGGL+  TD+ +LK  F  +G I +  +I +R++ KSRGF FVT++S   A +A   M+G+ L+G+ I V+
Sbjct:    9 KLFVGGLNLKTDEKALKAEFGKYGHIIKVFLIKDRKTNKSRGFAFVTFESPADAKAAARDMNGKYLDGKAIMVA 82          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = -3
Query:  362 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 601
            T +++       DD  LKE F  FG     KV+T+ ESGKS+GFGFV+++ +E A  A   M+G+ELNG+ I V  A  +
Sbjct:  191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = -3
Query:  362 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 601
            T +++       DD  LKE F  FG     KV+T+ ESGKS+GFGFV+++ +E A  A   M+G+ELNG+ I V  A  +
Sbjct:  191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269          
BLAST of CN188579 vs. ExPASy Swiss-Prot
Match: NUCL_MOUSE (Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 33/84 (39.29%), Postives = 53/84 (63.10%), Query Frame = -3
Query:  362 SQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 613
            SQ    LFV GLS  T + +LKE+F        A+++T+RE+G S+GFGFV ++S E A +A+ AM+  E++G  + + +A  +
Sbjct:  565 SQPSKTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 645          
The following BLAST results are available for this feature:
BLAST of CN188579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
HNRPG_HUMAN7.138e-1142.11Heterogeneous nuclear ribonucleoprotein G OS=Homo ... [more]
RMXL3_PANTR9.322e-1144.59RNA-binding motif protein, X-linked-like-3 OS=Pan ... [more]
PABP1_RAT9.322e-1142.50Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]
PABP1_MOUSE9.322e-1142.50Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
NUCL_MOUSE9.322e-1139.29Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188579 ID=CN188579; Name=CN188579; organism=Citrus sinensis; type=EST; length=744bp
TTTTTTTTTTTTTTTTTCACAAACCATTAATATGTTTTAACCATGACCGC
CATATGTCAAACAAATGACGGACGCATAGCAGTGTCAAACCTCTTACCTG
GCCTGCATAGCTATATAATATGCAATTAAGGGGGCAAGGCTGATAAATAA
AAGCCAACATAATAACAAATTCAGTAGTGCTAAACTTCCATCCTTAAAAC
AAACATAAAACTTTAATTCCTAGTTAAAGCACGCCCAAAAATTGAATAGA
ATCCCCTTAAAAACCATCATCCCCTCCTCTGTAGTTGACTCTGTAACCGC
CACGGTTGCCGCCATAAGATCCATCATTCCCTCCACCATAGCCACCGTCA
GAGCGAGGAGGTCTGTCATTGGCAAAAGACACCCGAATGTTTCTCCCATT
TAGCTCCTGGCCATCCATTGCAGACTGTGCCGAGCTGGCAGATTCATTAG
AGTCGTAGGTAACGAACCCAAATCCTCTTGACTTCCCAGATTCTCTCTCA
GTAATAACCTTTGCTTCAGTGATATCGCCAAAGTTGGAAAACGCTTCCTT
GAGAGAACTGTCATCGGTTCCCCAAGATAGCCCTCCAACAAAAAGCTTAG
TTTGTGATTGCGACATGAATCGAACCGCATTTATCAAAGATGCCTTTGGA
GCCTGGCCATTCTGCCTAACTAGCATCCCAAGTTTGCCACAAAAATGCCA
TTTTTGTCTCTTAAGCAAGAGAAACAGAAGCAAAGGATTTGCCT
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