CN188577

Overview
NameCN188577
Unique NameCN188577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN188577 vs. ExPASy Swiss-Prot
Match: CIPKJ_ORYSJ (CBL-interacting protein kinase 19 OS=Oryza sativa subsp. japonica GN=CIPK19 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.994e-11
Identity = 44/137 (32.12%), Postives = 70/137 (51.09%), Query Frame = -2 
Query:  197 TENDRHNNQEEKVSSPKFFNAFEFISSMSSGFDLSNLFENKKKTGSMFTSRYSARHIMEKIEGVAKGMNFKVAKVKDFKIRLRGDSEGRKGPLSXXXXXXXXXXXXXXXEFSKSSGDTLEYAKFCEEDVRPALKDIV 607
            +  +R       ++ P   NAF+ IS  S GFDLS LFE ++ +   F S    + I+ K+E +AK  +F V + KD+++ + G  EG KGPL+               E  K +GD  EY  FC  +++P ++ +V
Sbjct:  361 SSEERRQRPLGSLTRPASLNAFDIIS-FSKGFDLSGLFE-ERGSEVRFISAEPMQTIITKLEEIAKVKSFFVRR-KDWRVSIEGTREGLKGPLTIGAEIFELTPSLVVVEVKKKAGDKEEYDDFCNRELKPGMQHLV 494
The following BLAST results are available for this feature:
BLAST of CN188577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CIPKJ_ORYSJ2.994e-1132.12CBL-interacting protein kinase 19 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188577 ID=CN188577; Name=CN188577; organism=Citrus sinensis; type=EST; length=836bp
TAGTAGCCAACCCAAATATAGTATTTACATGTGTTCCGAAACCATTAAAC
CAAAAAACAAAATGTCAAAAATTTGCAAGTAAAATTAAAACCCTGGCCTG
TAGTTAAAATTAATTTAGTTGGTAGGCAGCATTTGAGAGTTGCATTTCAC
AATCTTCACCCTCGACTTTGTTAATATTGTCACCTTGCCATGTCCAGACG
ATGTCTTTCAATGCAGGCCTAACATCTTCTTCGCAAAACTTTGCATACTC
CAAGGTATCACCGGACGACTTCGAAAACTCGACGACCGCCACCTCCGGCG
CCACCTCGAACACCTCCGCAATCACCGACAGGGGCCCTTTTCGCCCCTCG
GAATCCCCGCGTAACCTAATTTTAAAATCCTTGACTTTTGCCACCTTAAA
GTTCATCCCCTTGGCAACCCCCTCAATCTTTTCCATTATATGCCTGGCCG
AATACCTTGACGTGAACATGGACCCCGTTTTCTTCTTGTTCTCAAACAAA
TTGGACAAATCGAACCCCGACGACATGGATGAGATGAACTCAAACGCGTT
AAAAAACTTGGGAGACGATACTTTCTCTTCCTGATTATTATGACGATCGT
TCTCCGTTTTTTCTGTCGCCGCTTGATCGTCGTCGCCATCATCATCATGT
TGAGTAATGGAAAACGCGACGGGTCTAGTGAACCCTTTGCGGAACCAAGG
GACGCGCATGATGGATTGAATGGTGATTCGCCTCTCGGGATCGGAGACGA
GAAGCTTGGAAATCAAACGCTTGGCATCCGTGGAAATCCAAGGAGGATAA
ACGAACTCAGCCTTGAAAACTTTCCTATACATGTTC
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