CN188576

Overview
NameCN188576
Unique NameCN188576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_CHLAA (Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=pdxS PE=3 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 4.374e-86
Identity = 153/191 (80.10%), Postives = 179/191 (93.72%), Query Frame = 3
Query:  105 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            +KS ++ KVGLAQML+GGVIMDVVTPEQAR+AEEAGA AVMALERVPADIR+QGGVARMSDP+LI  IKQ+VTIPVMAKARIGHFVEAQ+LEAIG+DY+DESEVLTPADEE+HINKH FR+PFVCGCRNLGEALRR+ EGAAM+RTKGEAGTGN++EAVRH R+V  +IR L++M++DE+FT+AK+I APY
Sbjct:    2 EKSTWTTKVGLAQMLKGGVIMDVVTPEQARIAEEAGAVAVMALERVPADIRAQGGVARMSDPELILAIKQAVTIPVMAKARIGHFVEAQVLEAIGVDYIDESEVLTPADEEHHINKHKFRVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARAVYSEIRRLQSMNEDELFTYAKQIQAPY 192          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_ROSCS (Pyridoxal biosynthesis lyase pdxS OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=pdxS PE=3 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.662e-85
Identity = 153/190 (80.53%), Postives = 175/190 (92.11%), Query Frame = 3
Query:  108 KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            KS ++ KVGLAQML+GGVIMDVVTPEQAR+AEEAGA AVMALERVPADIR+QGGVARMSDP+LI  IK++VTIPVMAKARIGHFVEAQ+LEA+GIDY+DESEVLTPADEE+HINKH FRIPFVCGCRNLGE LRR+ EGAAM+RTKGEAGTGN++EAVRH R+V  +IR L+ MD+DE+FT+AK I APY
Sbjct:    3 KSTWTTKVGLAQMLKGGVIMDVVTPEQARIAEEAGAVAVMALERVPADIRAQGGVARMSDPELILAIKEAVTIPVMAKARIGHFVEAQVLEALGIDYIDESEVLTPADEEHHINKHKFRIPFVCGCRNLGEGLRRVAEGAAMLRTKGEAGTGNVVEAVRHARAVYSEIRRLQTMDEDELFTYAKNIQAPY 192          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_HERA2 (Pyridoxal biosynthesis lyase pdxS OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=pdxS PE=3 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 3.586e-80
Identity = 144/189 (76.19%), Postives = 169/189 (89.42%), Query Frame = 3
Query:  111 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            S F+ KVGLAQML+GGVIMDVVTP+QA++AEEAGA AVMALERVPADIR  GGVARMSDP++I+ I ++VTIPVMAK+RIGHFVEAQILEAIG+DY+DESEVLTPADEE+H NKHNF++PFVCG RNLGEALRRI EGAAMIRTKGEAGTGN++EAVRH R++  +IR L+ +D DE+F  AK + APY
Sbjct:    4 STFTTKVGLAQMLKGGVIMDVVTPDQAKIAEEAGAVAVMALERVPADIRKDGGVARMSDPEMIQGIIEAVTIPVMAKSRIGHFVEAQILEAIGVDYIDESEVLTPADEEHHTNKHNFKVPFVCGARNLGEALRRITEGAAMIRTKGEAGTGNVVEAVRHARTMFAEIRRLQTLDPDELFVAAKNLQAPY 192          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDX1_DICDI (Probable pyridoxine biosynthesis protein pdx1 OS=Dictyostelium discoideum GN=pdx1 PE=1 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 4.384e-78
Identity = 141/188 (75.00%), Postives = 166/188 (88.30%), Query Frame = 3
Query:  111 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            SPF +K  LAQML+GGVIMDVVTPEQAR+AEEAGACAVMALE++PADIR  GGVARMSDP +IKEI  +VTIPVMAK RIGHFVEAQIL+ IG+DY+DESEVLT AD ENHI+K  F++PFVCGCRNLGEALRRI EGAAMIRTKGEAGTG+++EAVRH R+V  +I+ ++NMD  E++T+AK+I AP
Sbjct:   14 SPFRIKSSLAQMLKGGVIMDVVTPEQARIAEEAGACAVMALEKIPADIRHFGGVARMSDPGMIKEIMNAVTIPVMAKVRIGHFVEAQILQEIGVDYIDESEVLTIADNENHIDKSEFKVPFVCGCRNLGEALRRISEGAAMIRTKGEAGTGDVVEAVRHARAVNKEIKKIQNMDPHELYTYAKEIQAP 201          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDX1_SCHPO (Probable pyridoxine biosynthesis PDX1-like protein OS=Schizosaccharomyces pombe GN=snz1 PE=1 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 4.847e-77
Identity = 140/189 (74.07%), Postives = 165/189 (87.30%), Query Frame = 3
Query:  108 KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            K    VK GLAQML+GGVIMDVV  EQAR+AE AGACAVMALERVPADIR+QGGVARMSDP +IKEI+ +V+IPVMAK RIGHFVEAQILE+IG+DY+DESEVLTPAD+ NHI K  F +PFVCG RNLGEALRRI EGAAMIRTKGEAGTG+++EAVRH R + G++R +++M  DE++T+AK+IAAP
Sbjct:    6 KGSTQVKAGLAQMLKGGVIMDVVNAEQARIAEAAGACAVMALERVPADIRAQGGVARMSDPSMIKEIQAAVSIPVMAKVRIGHFVEAQILESIGVDYIDESEVLTPADDINHIEKSKFTVPFVCGSRNLGEALRRISEGAAMIRTKGEAGTGDVVEAVRHTRQMQGELRRVKSMSPDELYTYAKEIAAP 194          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_DEHSC (Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoides sp. (strain CBDB1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 8.268e-77
Identity = 138/186 (74.19%), Postives = 167/186 (89.78%), Query Frame = 3
Query:  117 FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            F VK GLAQML+GGVIMDV TPEQA++AEEAGACAVMALERVP+DIR+ GGVARM+DP +I++I + V+IPVMAK RIGHFVEAQILE++G+DY+DESEVLTPADE  H+ KH+F++PFVCGCR+LGEALRRI EGAAMIRTKGEAGTGNI+EAVRH+RSVMG +R +++M  DE+  +AK+I AP
Sbjct:    6 FKVKSGLAQMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPSDIRAAGGVARMADPTIIEQIMKVVSIPVMAKCRIGHFVEAQILESMGVDYIDESEVLTPADENFHVWKHDFKVPFVCGCRDLGEALRRIGEGAAMIRTKGEAGTGNIVEAVRHMRSVMGSVRRVQSMSPDELSAYAKEINAP 191          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_DEHSB (Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoides sp. (strain BAV1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 8.268e-77
Identity = 138/186 (74.19%), Postives = 167/186 (89.78%), Query Frame = 3
Query:  117 FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            F VK GLAQML+GGVIMDV TPEQA++AEEAGACAVMALERVP+DIR+ GGVARM+DP +I++I + V+IPVMAK RIGHFVEAQILE++G+DY+DESEVLTPADE  H+ KH+F++PFVCGCR+LGEALRRI EGAAMIRTKGEAGTGNI+EAVRH+RSVMG +R +++M  DE+  +AK+I AP
Sbjct:    6 FKVKSGLAQMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPSDIRAAGGVARMADPTIIEQIMKVVSIPVMAKCRIGHFVEAQILESMGVDYIDESEVLTPADENFHVWKHDFKVPFVCGCRDLGEALRRIGEGAAMIRTKGEAGTGNIVEAVRHMRSVMGSVRRVQSMSPDELSAYAKEINAP 191          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_DEHE1 (Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoides ethenogenes (strain 195) GN=pdxS PE=3 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.410e-76
Identity = 138/186 (74.19%), Postives = 167/186 (89.78%), Query Frame = 3
Query:  117 FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            F VK GLAQML+GGVIMDV TPEQA++AEEAGACAVMALERVP+DIR+ GGVARM+DP +I++I + V+IPVMAK RIGHFVEAQILE++G+DY+DESEVLTPADE  H+ KH+F++PFVCGCR+LGEALRRI EGAAMIRTKGEAGTGNI+EAVRH+RSVMG +R +++M  DE+  +AK+I AP
Sbjct:    6 FKVKSGLAQMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPSDIRAAGGVARMADPTIIEKIMKVVSIPVMAKCRIGHFVEAQILESMGVDYIDESEVLTPADESFHVWKHDFKVPFVCGCRDLGEALRRIGEGAAMIRTKGEAGTGNIVEAVRHMRSVMGSVRRVQSMSADELSAYAKEINAP 191          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_HELMI (Pyridoxal biosynthesis lyase pdxS OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.559e-75
Identity = 138/192 (71.88%), Postives = 165/192 (85.94%), Query Frame = 3
Query:  102 TKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            T+   ++VK GLA+ML+GGVIMDV TPEQA++AEEAGACAVMALERVPADIR+ GGVARM+DP +I  I  +VTIPVMAKARIGHFVEAQ+LE++GIDY+DESEVLTPAD+  HINK++F++PFVCG RNLGEALRRI EGAAMIRTKGE GTGN++EAVRH R VM +IR L  +  +E  +FAK+I APY
Sbjct:    3 TETGTWTVKKGLAEMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPADIRAAGGVARMADPTVILRIMDAVTIPVMAKARIGHFVEAQVLESLGIDYIDESEVLTPADDLFHINKNDFKVPFVCGARNLGEALRRIGEGAAMIRTKGEPGTGNVVEAVRHARQVMSEIRKLTTLPKEERMSFAKEIGAPY 194          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_THET8 (Pyridoxal biosynthesis lyase pdxS OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=pdxS PE=1 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 2.036e-75
Identity = 135/191 (70.68%), Postives = 166/191 (86.91%), Query Frame = 3
Query:  105 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            +K  F +K G A+M +GGVIMDV TPEQA +AEEAGA AVMALERVPADIR+QGGVARMSDP++IKEI  +V+IPVMAK RIGHFVEA ILEAIG+D++DESEVLTPADEE+HI+K  F++PFVCG RNLGEALRRI EGAAMIRTKGEAGTGN++EAVRH R++  +IR ++++ +DE+  +AK+I AP+
Sbjct:    2 EKGTFQIKTGFAEMFKGGVIMDVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIGHFVEAMILEAIGVDFIDESEVLTPADEEHHIDKWKFKVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPF 192          
The following BLAST results are available for this feature:
BLAST of CN188576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_CHLAA4.374e-8680.10Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus ... [more]
PDXS_ROSCS1.662e-8580.53Pyridoxal biosynthesis lyase pdxS OS=Roseiflexus c... [more]
PDXS_HERA23.586e-8076.19Pyridoxal biosynthesis lyase pdxS OS=Herpetosiphon... [more]
PDX1_DICDI4.384e-7875.00Probable pyridoxine biosynthesis protein pdx1 OS=D... [more]
PDX1_SCHPO4.847e-7774.07Probable pyridoxine biosynthesis PDX1-like protein... [more]
PDXS_DEHSC8.268e-7774.19Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoid... [more]
PDXS_DEHSB8.268e-7774.19Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoid... [more]
PDXS_DEHE11.410e-7674.19Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoid... [more]
PDXS_HELMI1.559e-7571.88Pyridoxal biosynthesis lyase pdxS OS=Heliobacteriu... [more]
PDXS_THET82.036e-7570.68Pyridoxal biosynthesis lyase pdxS OS=Thermus therm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188576 ID=CN188576; Name=CN188576; organism=Citrus sinensis; type=EST; length=677bp
GCGGTTCTCTTCCTTCGCAACACTTTTTCCTTCTCGCTGTCGGCGTAATG
GCAGGTACCGGAGTGGTGGCGGTCTACGGTAATGACGGCGCTATAACGGA
GACTAAAAAATCTCCATTCTCCGTTAAAGTCGGTCTAGCTCAGATGCTTC
GAGGCGGCGTTATAATGGACGTCGTTACTCCCGAGCAAGCGCGAGTCGCG
GAAGAGGCTGGTGCGTGCGCCGTCATGGCTCTTGAGCGCGTCCCCGCCGA
TATCCGCTCGCAAGGCGGCGTGGCTCGCATGTCTGACCCGCAACTTATCA
AGGAAATCAAACAGTCCGTCACCATCCCCGTCATGGCCAAGGCTCGTATT
GGTCACTTCGTCGAAGCTCAAATTCTCGAAGCTATTGGGATCGATTACGT
CGACGAGAGCGAAGTCTTGACTCCCGCCGACGAAGAGAATCACATCAACA
AGCACAACTTTCGTATCCCCTTCGTATGCGGCTGCCGGAACTTGGGGGAA
GCTTTGAGGAGGATTCGCGAAGGCGCGGCGATGATAAGAACGAAGGGCGA
GGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCGGTCTGTGA
TGGGGGATATTAGGGTTCTGAGGAACATGGACGATGACGAGGTGTTCACT
TTCGCAAAGAAGATAGCGGCGCCGTAC
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