CN188576

Overview
NameCN188576
Unique NameCN188576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_METLZ (Pyridoxal biosynthesis lyase pdxS OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=pdxS PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.015e-68
Identity = 123/180 (68.33%), Postives = 157/180 (87.22%), Query Frame = 3 
Query:  135 LAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            LAQML+GGVIMDV +PEQA++AE+AGACAVMALER+PADIR+ GGV+RMSDP++IK I+ +V+IPVMAK RIGHFVEAQILEAI IDY+DESEVL+PAD+ NHI+K+ F +PFVCG R+LGEALRR+ EGA MIRTKGEAGTG+I++AVRH+R++  +IR + ++  DE++  AK +  P
Sbjct:   12 LAQMLKGGVIMDVTSPEQAKIAEDAGACAVMALERIPADIRAAGGVSRMSDPKMIKGIQNAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDLNHIDKNKFNVPFVCGARDLGEALRRVAEGATMIRTKGEAGTGDIVQAVRHMRTMNSEIRRVVSLRQDELYVAAKDMQVP 191
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_BACAN (Pyridoxal biosynthesis lyase pdxS OS=Bacillus anthracis GN=pdxS PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.015e-68
Identity = 118/185 (63.78%), Postives = 157/185 (84.86%), Query Frame = 3 
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+M +GGVIMDV+  EQA++AEEAGA A+MALERVPADIR+ GGV+RM+DP +++E+  +V+IPVMAK RIGH VEA++LE++G+DY+DESEVLTPADE  H+NK ++ +PFVCGCR++GEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V  +IR + ++ +DE+ T+AK   APY
Sbjct:   10 VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAIMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPY 194
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_BACAC (Pyridoxal biosynthesis lyase pdxS OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=pdxS PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.015e-68
Identity = 118/185 (63.78%), Postives = 157/185 (84.86%), Query Frame = 3 
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+M +GGVIMDV+  EQA++AEEAGA A+MALERVPADIR+ GGV+RM+DP +++E+  +V+IPVMAK RIGH VEA++LE++G+DY+DESEVLTPADE  H+NK ++ +PFVCGCR++GEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V  +IR + ++ +DE+ T+AK   APY
Sbjct:   10 VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAIMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPY 194
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_BACAA (Pyridoxal biosynthesis lyase pdxS OS=Bacillus anthracis (strain A0248) GN=pdxS PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.015e-68
Identity = 118/185 (63.78%), Postives = 157/185 (84.86%), Query Frame = 3 
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+M +GGVIMDV+  EQA++AEEAGA A+MALERVPADIR+ GGV+RM+DP +++E+  +V+IPVMAK RIGH VEA++LE++G+DY+DESEVLTPADE  H+NK ++ +PFVCGCR++GEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V  +IR + ++ +DE+ T+AK   APY
Sbjct:   10 VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAIMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPY 194
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_PASMU (Pyridoxal biosynthesis lyase pdxS OS=Pasteurella multocida GN=pdxS PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 9.162e-68
Identity = 124/186 (66.67%), Postives = 157/186 (84.41%), Query Frame = 3 
Query:  120 SVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            +VK G+AQM +GGVIMDVV  EQAR+AE AGA AVMALERVP+DIR+ GGVARM++P+++KE+  +V+IPVMAKARIGH  EA++LEA+G+DY+DESEVLTPAD+E H+ K  F +PFVCGCR+LGEALRRI EGA+M+RTKGE GTGNI+EAVRH+R V   IR +  M+ DE+ T AK ++AP+
Sbjct:    9 TVKRGMAQMQKGGVIMDVVNAEQARIAEAAGAVAVMALERVPSDIRAAGGVARMANPKIVKEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADDEFHLLKCEFTVPFVCGCRDLGEALRRIGEGASMLRTKGEPGTGNIVEAVRHIRKVNAQIRKVVAMNHDELMTEAKNLSAPF 194
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_GEOTN (Pyridoxal biosynthesis lyase pdxS OS=Geobacillus thermodenitrificans (strain NG80-2) GN=pdxS PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 9.162e-68
Identity = 123/184 (66.85%), Postives = 155/184 (84.24%), Query Frame = 3 
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            VK G+A+M +GGVIMDVV  EQA++AE AGA AVMALERVPADIR+ GGVARM+DP +++E+  +V+IPVMAK RIGH+VEA++LEA+G+DY+DESEVLTPADEE HI+K  F +PFVCGCR+LGEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V   IR + +M +DE+   AK++ AP
Sbjct:    9 VKRGMAEMQKGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVVEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVSMSEDELVAEAKQLGAP 192
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_DESHY (Pyridoxal biosynthesis lyase pdxS OS=Desulfitobacterium hafniense (strain Y51) GN=pdxS PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 9.162e-68
Identity = 125/181 (69.06%), Postives = 154/181 (85.08%), Query Frame = 3 
Query:  135 LAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            LAQML+GGVIMDV TPEQA++AE AGACAVMALER+PADIR+ GGV+RMSDP++IK I ++V+IPVMAK RIGHFVEAQILEA+ IDY+DESEVL+PAD+  HI+K  F++PFVCG ++LGEALRRI EGAAMIRTKGE GTG+I++AVRH+R +   I  L  M +DE+F  AK++  PY
Sbjct:   12 LAQMLKGGVIMDVTTPEQAKIAEAAGACAVMALERIPADIRAVGGVSRMSDPKMIKGIMEAVSIPVMAKCRIGHFVEAQILEAVEIDYIDESEVLSPADDVYHIDKTRFKVPFVCGAKDLGEALRRINEGAAMIRTKGEPGTGDIVQAVRHMRMINRQISRLAGMREDELFQEAKELQVPY 192
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_DESHD (Pyridoxal biosynthesis lyase pdxS OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=pdxS PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 9.162e-68
Identity = 125/181 (69.06%), Postives = 154/181 (85.08%), Query Frame = 3 
Query:  135 LAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            LAQML+GGVIMDV TPEQA++AE AGACAVMALER+PADIR+ GGV+RMSDP++IK I ++V+IPVMAK RIGHFVEAQILEA+ IDY+DESEVL+PAD+  HI+K  F++PFVCG ++LGEALRRI EGAAMIRTKGE GTG+I++AVRH+R +   I  L  M +DE+F  AK++  PY
Sbjct:   12 LAQMLKGGVIMDVTTPEQAKIAEAAGACAVMALERIPADIRAVGGVSRMSDPKMIKGIMEAVSIPVMAKCRIGHFVEAQILEAVEIDYIDESEVLSPADDVYHIDKTRFKVPFVCGAKDLGEALRRINEGAAMIRTKGEPGTGDIVQAVRHMRMINRQISRLAGMREDELFQEAKELQVPY 192
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_BIFLO (Pyridoxal biosynthesis lyase pdxS OS=Bifidobacterium longum GN=pdxS PE=3 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 9.162e-68
Identity = 124/181 (68.51%), Postives = 156/181 (86.19%), Query Frame = 3 
Query:  135 LAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            LAQML+GGVIMDV TPEQA++A++AGACAVMALER+PADIR+ GGV+RMSDP +IK I+++V+IPVMAK RIGH  EA+IL+AI IDY+DESEVL+PAD+  HI+K+ F +PFVCG +NLGEALRRI EGAAMIRTKGE GTG++I+AVRH+R++   IR L  + DDEV+  AK++A PY
Sbjct:   12 LAQMLKGGVIMDVTTPEQAKIAQDAGACAVMALERIPADIRAAGGVSRMSDPAMIKGIQEAVSIPVMAKVRIGHIAEARILQAIEIDYIDESEVLSPADDVYHIDKNQFDVPFVCGAKNLGEALRRIAEGAAMIRTKGEPGTGDVIQAVRHMRTMNKQIRELVGLRDDEVYEAAKQLAVPY 192
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_BIFLI (Pyridoxal biosynthesis lyase pdxS OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=pdxS PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 9.162e-68
Identity = 124/181 (68.51%), Postives = 156/181 (86.19%), Query Frame = 3 
Query:  135 LAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            LAQML+GGVIMDV TPEQA++A++AGACAVMALER+PADIR+ GGV+RMSDP +IK I+++V+IPVMAK RIGH  EA+IL+AI IDY+DESEVL+PAD+  HI+K+ F +PFVCG +NLGEALRRI EGAAMIRTKGE GTG++I+AVRH+R++   IR L  + DDEV+  AK++A PY
Sbjct:   12 LAQMLKGGVIMDVTTPEQAKIAQDAGACAVMALERIPADIRAAGGVSRMSDPAMIKGIQEAVSIPVMAKVRIGHIAEARILQAIEIDYIDESEVLSPADDVYHIDKNQFDVPFVCGAKNLGEALRRIAEGAAMIRTKGEPGTGDVIQAVRHMRTMNKQIRELVGLRDDEVYEAAKQLAVPY 192
The following BLAST results are available for this feature:
BLAST of CN188576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_METLZ7.015e-6868.33Pyridoxal biosynthesis lyase pdxS OS=Methanocorpus... [more]
PDXS_BACAN7.015e-6863.78Pyridoxal biosynthesis lyase pdxS OS=Bacillus anth... [more]
PDXS_BACAC7.015e-6863.78Pyridoxal biosynthesis lyase pdxS OS=Bacillus anth... [more]
PDXS_BACAA7.015e-6863.78Pyridoxal biosynthesis lyase pdxS OS=Bacillus anth... [more]
PDXS_PASMU9.162e-6866.67Pyridoxal biosynthesis lyase pdxS OS=Pasteurella m... [more]
PDXS_GEOTN9.162e-6866.85Pyridoxal biosynthesis lyase pdxS OS=Geobacillus t... [more]
PDXS_DESHY9.162e-6869.06Pyridoxal biosynthesis lyase pdxS OS=Desulfitobact... [more]
PDXS_DESHD9.162e-6869.06Pyridoxal biosynthesis lyase pdxS OS=Desulfitobact... [more]
PDXS_BIFLO9.162e-6868.51Pyridoxal biosynthesis lyase pdxS OS=Bifidobacteri... [more]
PDXS_BIFLI9.162e-6868.51Pyridoxal biosynthesis lyase pdxS OS=Bifidobacteri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188576 ID=CN188576; Name=CN188576; organism=Citrus sinensis; type=EST; length=677bp
GCGGTTCTCTTCCTTCGCAACACTTTTTCCTTCTCGCTGTCGGCGTAATG
GCAGGTACCGGAGTGGTGGCGGTCTACGGTAATGACGGCGCTATAACGGA
GACTAAAAAATCTCCATTCTCCGTTAAAGTCGGTCTAGCTCAGATGCTTC
GAGGCGGCGTTATAATGGACGTCGTTACTCCCGAGCAAGCGCGAGTCGCG
GAAGAGGCTGGTGCGTGCGCCGTCATGGCTCTTGAGCGCGTCCCCGCCGA
TATCCGCTCGCAAGGCGGCGTGGCTCGCATGTCTGACCCGCAACTTATCA
AGGAAATCAAACAGTCCGTCACCATCCCCGTCATGGCCAAGGCTCGTATT
GGTCACTTCGTCGAAGCTCAAATTCTCGAAGCTATTGGGATCGATTACGT
CGACGAGAGCGAAGTCTTGACTCCCGCCGACGAAGAGAATCACATCAACA
AGCACAACTTTCGTATCCCCTTCGTATGCGGCTGCCGGAACTTGGGGGAA
GCTTTGAGGAGGATTCGCGAAGGCGCGGCGATGATAAGAACGAAGGGCGA
GGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCGGTCTGTGA
TGGGGGATATTAGGGTTCTGAGGAACATGGACGATGACGAGGTGTTCACT
TTCGCAAAGAAGATAGCGGCGCCGTAC
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