CN188576

Overview
NameCN188576
Unique NameCN188576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_BIFLD (Pyridoxal biosynthesis lyase pdxS OS=Bifidobacterium longum (strain DJO10A) GN=pdxS PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.197e-67
Identity = 124/181 (68.51%), Postives = 156/181 (86.19%), Query Frame = 3 
Query:  135 LAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            LAQML+GGVIMDV TPEQA++A++AGACAVMALER+PADIR+ GGV+RMSDP +IK I+++V+IPVMAK RIGH  EA+IL+AI IDY+DESEVL+PAD+  HI+K+ F +PFVCG +NLGEALRRI EGAAMIRTKGE GTG++I+AVRH+R++   IR L  + DDEV+  AK++A PY
Sbjct:   12 LAQMLKGGVIMDVTTPEQAKIAQDAGACAVMALERIPADIRAAGGVSRMSDPAMIKGIQEAVSIPVMAKVRIGHIAEARILQAIDIDYIDESEVLSPADDVYHIDKNQFDVPFVCGAKNLGEALRRIAEGAAMIRTKGEPGTGDVIQAVRHMRTMNKQIRELVALRDDEVYEAAKQLAVPY 192
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_BACSK (Pyridoxal biosynthesis lyase pdxS OS=Bacillus clausii (strain KSM-K16) GN=pdxS PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.197e-67
Identity = 123/185 (66.49%), Postives = 155/185 (83.78%), Query Frame = 3 
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+AQM +GGVIMDV+  EQA++AEEAGA AVMALERVP+DIR+ GGVARM+DP + +E+  +V+IPVMAKARIGH VEA++LEA+G+DY+DESEVLTPADE  H+NK +F +PFVCG R+LGEA RRI EGA+MIRTKGE GTGNI+EAVRH+R +   I+ + +M  DE+ T AK++ APY
Sbjct:   10 VKQGMAQMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMADPTVTEEVLNAVSIPVMAKARIGHIVEAKVLEAMGVDYIDESEVLTPADEVYHLNKRDFTVPFVCGARDLGEAARRIGEGASMIRTKGEPGTGNIVEAVRHMRKMQAQIKQVAHMSTDELMTEAKQLGAPY 194
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_BIFAA (Pyridoxal biosynthesis lyase pdxS OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=pdxS PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.041e-67
Identity = 122/181 (67.40%), Postives = 157/181 (86.74%), Query Frame = 3 
Query:  135 LAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            LAQML+GGVIMDV TPEQA++A++AGACAVMALER+PADIR+ GGV+RMSDP +IK I+++V+IPVMAK RIGH  EA+IL+AI IDY+DESEVL+PAD+  HI+K+ F +PFVCG +NLGEALRR+ EGA+MIRTKGE GTG++I+AVRH+R++   IR L ++ DDEV+  AK++A PY
Sbjct:   12 LAQMLKGGVIMDVTTPEQAKIAQDAGACAVMALERIPADIRAAGGVSRMSDPAMIKGIQEAVSIPVMAKVRIGHIAEARILQAIEIDYIDESEVLSPADDVYHIDKNRFDVPFVCGAKNLGEALRRVAEGASMIRTKGEPGTGDVIQAVRHMRTMNKQIRELVSLRDDEVYEAAKQLAVPY 192
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_METTH (Pyridoxal biosynthesis lyase pdxS OS=Methanobacterium thermoautotrophicum GN=pdxS PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.666e-67
Identity = 123/184 (66.85%), Postives = 155/184 (84.24%), Query Frame = 3 
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            +K G A+M +GGVIMDVV  EQA +AE++GA AVMALE+VPADIR+ GGVARM+DP  ++EI  +V+IPVMAK RIGHFVEAQ+LEA+G+D +DESEVLTPADE  HI+K  F +PFVCG RNLGEALRRI EGAAMIRTKGE GTGNI+EAVRH+R +M +IR ++N +++E++  ++KI AP
Sbjct:    8 LKKGFAKMTKGGVIMDVVNAEQAAIAEDSGAVAVMALEKVPADIRASGGVARMADPNKVQEIMDAVSIPVMAKVRIGHFVEAQVLEALGVDMIDESEVLTPADERFHIDKKKFTVPFVCGARNLGEALRRIDEGAAMIRTKGEPGTGNIVEAVRHMRIMMSEIREIQNKEEEELWEVSRKIEAP 191
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_STRZT (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=pdxS PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.482e-67
Identity = 122/186 (65.59%), Postives = 158/186 (84.95%), Query Frame = 3 
Query:  117 FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            + +   LAQML+GGVIMDV  PEQAR+AE AGA AVMALER+PADIR+ GGV+RMSDP++IKEI+++V+IPVMAK RIGHFVEAQILEAI IDY+DESEVL+PAD+  H++K  F++PFVCG ++LGEALRRI EGA+MIRTKGE GTG+I++AVRH+R +  +IR ++N+ +DE++  AK +  P
Sbjct:    6 YELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRMSDPKMIKEIQEAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGEPGTGDIVQAVRHMRMMNQEIRRIQNLREDELYVAAKDLQVP 191
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_STRZP (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae (strain P1031) GN=pdxS PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.482e-67
Identity = 122/186 (65.59%), Postives = 158/186 (84.95%), Query Frame = 3 
Query:  117 FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            + +   LAQML+GGVIMDV  PEQAR+AE AGA AVMALER+PADIR+ GGV+RMSDP++IKEI+++V+IPVMAK RIGHFVEAQILEAI IDY+DESEVL+PAD+  H++K  F++PFVCG ++LGEALRRI EGA+MIRTKGE GTG+I++AVRH+R +  +IR ++N+ +DE++  AK +  P
Sbjct:    6 YELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRMSDPKMIKEIQEAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGEPGTGDIVQAVRHMRMMNQEIRRIQNLREDELYVAAKDLQVP 191
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_STRZJ (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae (strain JJA) GN=pdxS PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.482e-67
Identity = 122/186 (65.59%), Postives = 158/186 (84.95%), Query Frame = 3 
Query:  117 FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            + +   LAQML+GGVIMDV  PEQAR+AE AGA AVMALER+PADIR+ GGV+RMSDP++IKEI+++V+IPVMAK RIGHFVEAQILEAI IDY+DESEVL+PAD+  H++K  F++PFVCG ++LGEALRRI EGA+MIRTKGE GTG+I++AVRH+R +  +IR ++N+ +DE++  AK +  P
Sbjct:    6 YELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRMSDPKMIKEIQEAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGEPGTGDIVQAVRHMRMMNQEIRRIQNLREDELYVAAKDLQVP 191
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_STRR6 (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pdxS PE=3 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 3.482e-67
Identity = 122/186 (65.59%), Postives = 158/186 (84.95%), Query Frame = 3 
Query:  117 FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            + +   LAQML+GGVIMDV  PEQAR+AE AGA AVMALER+PADIR+ GGV+RMSDP++IKEI+++V+IPVMAK RIGHFVEAQILEAI IDY+DESEVL+PAD+  H++K  F++PFVCG ++LGEALRRI EGA+MIRTKGE GTG+I++AVRH+R +  +IR ++N+ +DE++  AK +  P
Sbjct:    6 YELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRMSDPKMIKEIQEAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGEPGTGDIVQAVRHMRMMNQEIRRIQNLREDELYVAAKDLQVP 191
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_STRPN (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae GN=pdxS PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.482e-67
Identity = 122/186 (65.59%), Postives = 158/186 (84.95%), Query Frame = 3 
Query:  117 FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            + +   LAQML+GGVIMDV  PEQAR+AE AGA AVMALER+PADIR+ GGV+RMSDP++IKEI+++V+IPVMAK RIGHFVEAQILEAI IDY+DESEVL+PAD+  H++K  F++PFVCG ++LGEALRRI EGA+MIRTKGE GTG+I++AVRH+R +  +IR ++N+ +DE++  AK +  P
Sbjct:    6 YELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRMSDPKMIKEIQEAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGEPGTGDIVQAVRHMRMMNQEIRRIQNLREDELYVAAKDLQVP 191
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_STRPJ (Pyridoxal biosynthesis lyase pdxS OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.482e-67
Identity = 122/186 (65.59%), Postives = 158/186 (84.95%), Query Frame = 3 
Query:  117 FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            + +   LAQML+GGVIMDV  PEQAR+AE AGA AVMALER+PADIR+ GGV+RMSDP++IKEI+++V+IPVMAK RIGHFVEAQILEAI IDY+DESEVL+PAD+  H++K  F++PFVCG ++LGEALRRI EGA+MIRTKGE GTG+I++AVRH+R +  +IR ++N+ +DE++  AK +  P
Sbjct:    6 YELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRMSDPKMIKEIQEAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGEPGTGDIVQAVRHMRMMNQEIRRIQNLREDELYVAAKDLQVP 191
The following BLAST results are available for this feature:
BLAST of CN188576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_BIFLD1.197e-6768.51Pyridoxal biosynthesis lyase pdxS OS=Bifidobacteri... [more]
PDXS_BACSK1.197e-6766.49Pyridoxal biosynthesis lyase pdxS OS=Bacillus clau... [more]
PDXS_BIFAA2.041e-6767.40Pyridoxal biosynthesis lyase pdxS OS=Bifidobacteri... [more]
PDXS_METTH2.666e-6766.85Pyridoxal biosynthesis lyase pdxS OS=Methanobacter... [more]
PDXS_STRZT3.482e-6765.59Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]
PDXS_STRZP3.482e-6765.59Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]
PDXS_STRZJ3.482e-6765.59Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]
PDXS_STRR63.482e-6765.59Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]
PDXS_STRPN3.482e-6765.59Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]
PDXS_STRPJ3.482e-6765.59Pyridoxal biosynthesis lyase pdxS OS=Streptococcus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188576 ID=CN188576; Name=CN188576; organism=Citrus sinensis; type=EST; length=677bp
GCGGTTCTCTTCCTTCGCAACACTTTTTCCTTCTCGCTGTCGGCGTAATG
GCAGGTACCGGAGTGGTGGCGGTCTACGGTAATGACGGCGCTATAACGGA
GACTAAAAAATCTCCATTCTCCGTTAAAGTCGGTCTAGCTCAGATGCTTC
GAGGCGGCGTTATAATGGACGTCGTTACTCCCGAGCAAGCGCGAGTCGCG
GAAGAGGCTGGTGCGTGCGCCGTCATGGCTCTTGAGCGCGTCCCCGCCGA
TATCCGCTCGCAAGGCGGCGTGGCTCGCATGTCTGACCCGCAACTTATCA
AGGAAATCAAACAGTCCGTCACCATCCCCGTCATGGCCAAGGCTCGTATT
GGTCACTTCGTCGAAGCTCAAATTCTCGAAGCTATTGGGATCGATTACGT
CGACGAGAGCGAAGTCTTGACTCCCGCCGACGAAGAGAATCACATCAACA
AGCACAACTTTCGTATCCCCTTCGTATGCGGCTGCCGGAACTTGGGGGAA
GCTTTGAGGAGGATTCGCGAAGGCGCGGCGATGATAAGAACGAAGGGCGA
GGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCGGTCTGTGA
TGGGGGATATTAGGGTTCTGAGGAACATGGACGATGACGAGGTGTTCACT
TTCGCAAAGAAGATAGCGGCGCCGTAC
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