CN188576

Overview
NameCN188576
Unique NameCN188576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_COREF (Pyridoxal biosynthesis lyase pdxS OS=Corynebacterium efficiens GN=pdxS PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.495e-65
Identity = 120/184 (65.22%), Postives = 150/184 (81.52%), Query Frame = 3
Query:  126 KVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            K G A   +GGVIMDVV PEQAR+AE AGA AVMALERVPADIR+QGGV+RMSDP +I  I ++V IPVMAKARIGHFVEAQ+L+++G+ ++DESEVLTPAD  NHI+K  F +PFVCG  NLGEALRR+ EGAAMIR+KGEAGTG++  AV H+R++  +I  L +M +DE++  AK++ APY
Sbjct:   13 KTGYADRFKGGVIMDVVNPEQARIAEAAGAVAVMALERVPADIRAQGGVSRMSDPDMIDGILEAVDIPVMAKARIGHFVEAQVLQSLGVHFIDESEVLTPADYANHIDKFAFEVPFVCGATNLGEALRRVNEGAAMIRSKGEAGTGDVSNAVTHMRTIRAEINRLTSMAEDELYVAAKELQAPY 196          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_THEGJ (Pyridoxal biosynthesis lyase pdxS OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pdxS PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.617e-64
Identity = 125/191 (65.45%), Postives = 152/191 (79.58%), Query Frame = 3
Query:  105 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            KK    +K G A+M++GGVIMDV   EQAR+AEEAGA AVMAL RVPADIR  GGVARM+  + I+EI  +VTIPVMAK RIGH  EA+ILEA+G+D +DESEVLTP+D   HI+K  F+IPFVCG RNLGEA+RRI EGAAM+RTKGEAGTGNIIEAVRHVR +  +I +L+ M D++++  A+K A PY
Sbjct:    9 KKGTERLKRGFAKMVKGGVIMDVTNAEQARIAEEAGAVAVMALHRVPADIRKAGGVARMAPIEKIQEIMDAVTIPVMAKVRIGHVAEARILEALGVDMIDESEVLTPSDPYFHIDKREFKIPFVCGNRNLGEAVRRIWEGAAMMRTKGEAGTGNIIEAVRHVRLLKDNIALLQRMTDEQIYGVAEKFAEPY 199          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_PYRFU (Pyridoxal biosynthesis lyase pdxS OS=Pyrococcus furiosus GN=pdxS PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.617e-64
Identity = 126/191 (65.97%), Postives = 151/191 (79.06%), Query Frame = 3
Query:  105 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            +K    +K G A+M++GGVIMDV   EQAR+AEEAGA AVMAL +VPADIR  GGVARM+  + I+EI  +VTIPVMAK RIGH  EA+ILEA+G+D +DESEVLTPAD   HI K  F +PFVCG RNLGEA+RRI EGAAMIRTKGEAGTGNIIEAVRHVR V  +IR+++ M D+E++  A+K A PY
Sbjct:    9 EKGTERLKRGFAKMVKGGVIMDVTNAEQARIAEEAGAVAVMALHKVPADIRKAGGVARMAPVEKIQEIMDAVTIPVMAKVRIGHEAEARILEALGVDMIDESEVLTPADPFFHIYKKKFTVPFVCGARNLGEAVRRIWEGAAMIRTKGEAGTGNIIEAVRHVRLVNENIRLIQRMTDEEIYGVAEKFAEPY 199          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_METST (Pyridoxal biosynthesis lyase pdxS OS=Methanosphaera stadtmanae (strain DSM 3091) GN=pdxS PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.617e-64
Identity = 119/184 (64.67%), Postives = 151/184 (82.07%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            +K G A+M +GGVIMDVV  EQA +AE+AGA +VMALERVP+DIR  GGVARM+DP  + EI  +V IPVMAK RIGHFVEAQ+L+++G+D +DESEVLT ADE+ HI+K  F IPFVCG R+LGEALRR+ EGAAMIRTKGEAGTGN++EAVRH+R++ G IR + N  ++E++  A++I AP
Sbjct:    8 LKEGFAKMTKGGVIMDVVNAEQAAIAEDAGAVSVMALERVPSDIRKAGGVARMADPSKVIEIMDAVDIPVMAKVRIGHFVEAQVLQSLGVDMIDESEVLTQADEDFHIDKEQFTIPFVCGARDLGEALRRVDEGAAMIRTKGEAGTGNVVEAVRHMRTIQGAIREIENKTEEELWQVAREINAP 191          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_THEON (Pyridoxal biosynthesis lyase pdxS OS=Thermococcus onnurineus (strain NA1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.112e-64
Identity = 121/185 (65.41%), Postives = 150/185 (81.08%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            +K G A+M++GGVIMDV   EQAR+AEEAGA +VMAL +VPADIR  GGVARM+  + I+EI  +VTIPVMAK RIGH  EA++LEA+G+D +DESEVLTPAD   HI+K  F +PFVCG RNLGEA+RRI EG+AMIRTKGEAGTGNI+EAVRHVR V  +IR+++ M D++V+  A+K A PY
Sbjct:   15 LKRGFARMVKGGVIMDVTNAEQARIAEEAGAVSVMALHKVPADIRKAGGVARMAPIEKIQEIMDAVTIPVMAKVRIGHVAEARVLEALGVDMIDESEVLTPADPFFHIDKREFNVPFVCGARNLGEAVRRIWEGSAMIRTKGEAGTGNIVEAVRHVRLVADNIRLIQRMTDEQVYAVAEKFAEPY 199          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_PYRKO (Pyridoxal biosynthesis lyase pdxS OS=Pyrococcus kodakaraensis GN=pdxS PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.759e-64
Identity = 124/185 (67.03%), Postives = 148/185 (80.00%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            +K G A+M++GGVIMDV   EQAR+AEEAGA +VMAL RVPADIR  GGVARM+  + I+EI  +VTIPVMAK RIGH  EA+ILEA+G+D +DESEVLTP+D   HI+K  F +PFVCG RNLGEA+RRI EGAAMIRTKGEAGTGNI+EAVRHVR V   IR ++ M DD+V+  A+K A PY
Sbjct:   15 LKRGFAKMVKGGVIMDVTNAEQARIAEEAGAVSVMALHRVPADIRKAGGVARMAPIEKIQEIMDAVTIPVMAKVRIGHVAEAKILEALGVDMIDESEVLTPSDPFFHIDKREFTVPFVCGARNLGEAVRRIWEGAAMIRTKGEAGTGNIVEAVRHVRLVAEGIRQIQAMTDDQVYAVAEKFAEPY 199          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_FUSNN (Pyridoxal biosynthesis lyase pdxS OS=Fusobacterium nucleatum subsp. nucleatum GN=pdxS PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.759e-64
Identity = 117/175 (66.86%), Postives = 147/175 (84.00%), Query Frame = 3
Query:  153 GGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            GGVIMDV T EQA +AEEAGA AVMALER+PADIR+ GGV+RMSDP+LIKEI  +V IPVMAK RIGHFVEA+IL+AIGID++DESEVL+PAD  +H+NK +F  PFVCG RNLGEALRRI EGA MIRTKGEAGTG++++AV H+R ++ +I +++ + +DE++  AK +  PY
Sbjct:    7 GGVIMDVTTKEQAIIAEEAGAVAVMALERIPADIRAAGGVSRMSDPKLIKEIMSAVKIPVMAKVRIGHFVEAEILQAIGIDFIDESEVLSPADSVHHVNKRDFSTPFVCGARNLGEALRRISEGAKMIRTKGEAGTGDVVQAVSHMRQIIKEINLVKALREDELYVMAKDLQVPY 181          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_TROWT (Pyridoxal biosynthesis lyase pdxS OS=Tropheryma whipplei (strain Twist) GN=pdxS PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.603e-64
Identity = 116/185 (62.70%), Postives = 153/185 (82.70%), Query Frame = 3
Query:  120 SVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            ++KVGLAQML+GGVIMDVVTP+QA++AE+AGA AVMALE++P+DIR+ GGV+RMSDP LI+ +  SV+IPVMAK RIGHF EAQIL+++ +DY+DESEVL+ AD   HI+K  F +PFVCG  NLGEALRRI EGA+MIR+KGEAGTG+I +A +H+R+++ +I  L    +DE+   A+K+ AP
Sbjct:    5 NLKVGLAQMLKGGVIMDVVTPDQAKIAEDAGAVAVMALEKIPSDIRASGGVSRMSDPGLIERVMDSVSIPVMAKVRIGHFAEAQILQSLKVDYIDESEVLSVADSSYHIDKRKFTVPFVCGATNLGEALRRISEGASMIRSKGEAGTGDIAQATKHIRAILSEISALTQAREDELPARARKLGAP 189          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_METVS (Pyridoxal biosynthesis lyase pdxS OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pdxS PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.603e-64
Identity = 121/159 (76.10%), Postives = 140/159 (88.05%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSV 599
            +K G A+M++ GV+MDV   EQA++AEEAGA AVMALERVPADIR QGGVARMSDP +I EIK +V+IPVMAKARIGHFVEAQ+LE+IG+D +DESEVLTPADE NHINK  F  PFVCG RNLGEALRRI EGAAMIRTKGEAGTGN++EAV+H+R+V
Sbjct:    9 LKRGFAKMVKHGVVMDVTNVEQAKIAEEAGAAAVMALERVPADIRVQGGVARMSDPDMILEIKDAVSIPVMAKARIGHFVEAQVLESIGVDMIDESEVLTPADEINHINKKAFTAPFVCGARNLGEALRRIDEGAAMIRTKGEAGTGNVVEAVKHMRAV 167          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_PYRHO (Pyridoxal biosynthesis lyase pdxS OS=Pyrococcus horikoshii GN=pdxS PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 4.706e-64
Identity = 126/191 (65.97%), Postives = 150/191 (78.53%), Query Frame = 3
Query:  105 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            +K    +K G A+M++GGVIMDV   EQAR+AEEAGA AVMAL +VPADIR  GGVARM+  + I+EI  +VTIPVMAK RIGH  EA+ILEA+G+D +DESEVLTPAD   HI K  F  PFVCG RNLGEA+RRI EGAAMIRTKGEAGTGNIIEAVRHVR V  +IR+++ M D+E++  A+K A PY
Sbjct:    9 EKGTERLKRGFAKMVKGGVIMDVTNAEQARIAEEAGAVAVMALHKVPADIRKAGGVARMAPVEKIQEIMDAVTIPVMAKCRIGHEAEARILEALGVDMIDESEVLTPADPFFHIYKKKFTAPFVCGARNLGEAVRRIWEGAAMIRTKGEAGTGNIIEAVRHVRLVNENIRLIQRMTDEEIYGVAEKFAEPY 199          
The following BLAST results are available for this feature:
BLAST of CN188576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_COREF2.495e-6565.22Pyridoxal biosynthesis lyase pdxS OS=Corynebacteri... [more]
PDXS_THEGJ1.617e-6465.45Pyridoxal biosynthesis lyase pdxS OS=Thermococcus ... [more]
PDXS_PYRFU1.617e-6465.97Pyridoxal biosynthesis lyase pdxS OS=Pyrococcus fu... [more]
PDXS_METST1.617e-6464.67Pyridoxal biosynthesis lyase pdxS OS=Methanosphaer... [more]
PDXS_THEON2.112e-6465.41Pyridoxal biosynthesis lyase pdxS OS=Thermococcus ... [more]
PDXS_PYRKO2.759e-6467.03Pyridoxal biosynthesis lyase pdxS OS=Pyrococcus ko... [more]
PDXS_FUSNN2.759e-6466.86Pyridoxal biosynthesis lyase pdxS OS=Fusobacterium... [more]
PDXS_TROWT3.603e-6462.70Pyridoxal biosynthesis lyase pdxS OS=Tropheryma wh... [more]
PDXS_METVS3.603e-6476.10Pyridoxal biosynthesis lyase pdxS OS=Methanococcus... [more]
PDXS_PYRHO4.706e-6465.97Pyridoxal biosynthesis lyase pdxS OS=Pyrococcus ho... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188576 ID=CN188576; Name=CN188576; organism=Citrus sinensis; type=EST; length=677bp
GCGGTTCTCTTCCTTCGCAACACTTTTTCCTTCTCGCTGTCGGCGTAATG
GCAGGTACCGGAGTGGTGGCGGTCTACGGTAATGACGGCGCTATAACGGA
GACTAAAAAATCTCCATTCTCCGTTAAAGTCGGTCTAGCTCAGATGCTTC
GAGGCGGCGTTATAATGGACGTCGTTACTCCCGAGCAAGCGCGAGTCGCG
GAAGAGGCTGGTGCGTGCGCCGTCATGGCTCTTGAGCGCGTCCCCGCCGA
TATCCGCTCGCAAGGCGGCGTGGCTCGCATGTCTGACCCGCAACTTATCA
AGGAAATCAAACAGTCCGTCACCATCCCCGTCATGGCCAAGGCTCGTATT
GGTCACTTCGTCGAAGCTCAAATTCTCGAAGCTATTGGGATCGATTACGT
CGACGAGAGCGAAGTCTTGACTCCCGCCGACGAAGAGAATCACATCAACA
AGCACAACTTTCGTATCCCCTTCGTATGCGGCTGCCGGAACTTGGGGGAA
GCTTTGAGGAGGATTCGCGAAGGCGCGGCGATGATAAGAACGAAGGGCGA
GGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCGGTCTGTGA
TGGGGGATATTAGGGTTCTGAGGAACATGGACGATGACGAGGTGTTCACT
TTCGCAAAGAAGATAGCGGCGCCGTAC
back to top