CN188576

Overview
NameCN188576
Unique NameCN188576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_THEVO (Pyridoxal biosynthesis lyase pdxS OS=Thermoplasma volcanium GN=pdxS PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.122e-60
Identity = 118/185 (63.78%), Postives = 143/185 (77.30%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            +K G + M +GGVIMDV T EQA++AE+AGA AVMALERVPADIR+ GGVARM+DP+ I+EI  +VTIPVMAK RIGH  EA  LE +G+D +DESEVLTPAD   H+ K    +P V G RNL EA+RRI EGAAM+RTKGEAGTGNIIEAVRH+R V  +I ++R M  DE+ T A+ IA+ Y
Sbjct:   15 IKRGFSSMTKGGVIMDVTTAEQAKIAEKAGAVAVMALERVPADIRAAGGVARMADPKKIREILDAVTIPVMAKVRIGHISEAYTLEKLGVDMLDESEVLTPADPFFHLYKKKLTVPVVSGARNLPEAVRRIFEGAAMVRTKGEAGTGNIIEAVRHIRKVNEEIAIVRRMTQDEIKTAAENIASSY 199          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_THEAC (Pyridoxal biosynthesis lyase pdxS OS=Thermoplasma acidophilum GN=pdxS PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.122e-60
Identity = 119/185 (64.32%), Postives = 142/185 (76.76%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            +K G + M +GGVIMDV T +QA++AE AGA AVMALERVPADIR+ GGVARM+DP  IKEI  +V+IPVMAK RIGH  EA +LE IG+D +DESEVLTPAD   H+ K N  +P V G RNL EA+RRI EGAAMIRTKGEAGTGNIIEAVRH+R V  +I VL+ M D+++   A  I+A Y
Sbjct:   15 IKRGFSAMTKGGVIMDVTTADQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPMKIKEIMDAVSIPVMAKVRIGHISEAYVLEKIGVDMLDESEVLTPADPFFHLYKKNLTVPVVSGARNLPEAVRRIFEGAAMIRTKGEAGTGNIIEAVRHIRKVNEEISVLKRMSDEQLRAVASNISASY 199          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_SULTO (Pyridoxal biosynthesis lyase pdxS OS=Sulfolobus tokodaii GN=pdxS PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.184e-60
Identity = 108/176 (61.36%), Postives = 143/176 (81.25%), Query Frame = 3
Query:  150 RGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            +GGV+MDV    QA +AE+AGA AVM L+++P D+R  GGVARM+DP++I+E+  S+TIPVMAK RIGH+ EA+ILEA+G+D +DESEVLTPADEE+HINK  F++PFV G RNLGEALRRI EGA+MIRTKGEAGTGN+ EAV+H++ + G+IR L +M +++    A++   PY
Sbjct:   58 KGGVVMDVTNVTQAEIAEDAGATAVMVLDKLPYDVRKSGGVARMADPKIIEEVMNSITIPVMAKVRIGHYYEAKILEALGVDMIDESEVLTPADEEHHINKWEFKVPFVNGARNLGEALRRITEGASMIRTKGEAGTGNVSEAVKHMKIINGEIRSLISMSEEDRMKKAREYQVPY 233          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_HALLT (Pyridoxal biosynthesis lyase pdxS OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=pdxS PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.199e-59
Identity = 117/194 (60.31%), Postives = 149/194 (76.80%), Query Frame = 3
Query:   93 ITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            + E K+    VK G A+M +GGVIMDVVT EQAR+AE+ GA AVMALE VPADIR +GGVARM DP+ + EI   V+IPVM K+RIGH  EA+ILE++G+D +DESEVLTPAD+E H +K +F  PFVCG R+L EALRRIREGAAMIRTKGEAGTG++ +AV+H R++   IR L  ++ +E   +A++  AP
Sbjct:    7 LEELKRGTDLVKRGFARMQKGGVIMDVVTREQARIAEDTGAVAVMALEAVPADIRKRGGVARMPDPENVTEIIDEVSIPVMGKSRIGHRKEAEILESLGVDMIDESEVLTPADDEYHTDKRDFASPFVCGARDLPEALRRIREGAAMIRTKGEAGTGDVNQAVKHQRTIKTQIRTLTGLNHEEREKWAREHGAP 200          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_NATPD (Pyridoxal biosynthesis lyase pdxS OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=pdxS PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.953e-59
Identity = 119/194 (61.34%), Postives = 145/194 (74.74%), Query Frame = 3
Query:   93 ITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            + E ++    VK G A+M +GGVIMDVVT EQAR+AE+AGA AVM LE VPADIR +GGVARM+DP  ++++   V+IPVM KARIGH  EAQILEA G D +DESEVLT AD+  HI+K  F  PFVCG RNLGEALRRI EGAAMIRTKGEAGTG++ +AV H R++   IR L  MD +E   +A++  AP
Sbjct:    6 LEELRRGTDLVKRGFAKMQKGGVIMDVVTREQARIAEDAGAVAVMHLESVPADIRKRGGVARMADPGGLEDVIDEVSIPVMGKARIGHTAEAQILEATGADMIDESEVLTQADDRYHIDKREFTAPFVCGARNLGEALRRIDEGAAMIRTKGEAGTGDVNQAVTHQRNIQRSIRKLSGMDYEERDEWAREHGAP 199          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_SULSO (Pyridoxal biosynthesis lyase pdxS OS=Sulfolobus solfataricus GN=pdxS PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.732e-58
Identity = 105/176 (59.66%), Postives = 142/176 (80.68%), Query Frame = 3
Query:  150 RGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            +GGV+MD+   +QA++AEEAGA AVM L+++P D+R  GGVARM+DP++I+E+  S+TIPVMAK RIGH+ EA++LEA+G+D +DESEVLTPADEE+HINK  F +PFV G RNLGEALRR  EGA+MIRTKGEAGTGN+ EAV+H++ +  +IR L +M +++    A++   PY
Sbjct:   60 KGGVVMDITNVQQAQIAEEAGAVAVMVLDKLPYDVRKSGGVARMADPKIIEEVMSSITIPVMAKVRIGHYYEAKLLEALGVDMIDESEVLTPADEEHHINKWEFSVPFVNGARNLGEALRRTSEGASMIRTKGEAGTGNVSEAVKHMKIINSEIRSLISMSEEDRVKKAREYQVPY 235          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_SULIY (Pyridoxal biosynthesis lyase pdxS OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.262e-58
Identity = 109/202 (53.96%), Postives = 151/202 (74.75%), Query Frame = 3
Query:   93 ITETKKSPFSVKVGLAQML-------RGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            + E KK   +++ G  ++        +GGV+MD+   +QA++AEEAGA AVM L+++P D+R  GGVARM+DP++I E+  S+TIPVMAK RIGH+ EA++LEA+G+D +DESEVLTPADEE+HINK  F +PFV G RNLGEALRR  EGA+MIRTKGEAGTGN+ EAV+H++ +  +IR L +M +++    A++   PY
Sbjct:   34 LPELKKLDSTIQTGTTRVKHAFPIFQKGGVVMDITNVQQAQIAEEAGAVAVMVLDKLPYDVRKSGGVARMADPKIIGEVMNSITIPVMAKVRIGHYYEAKLLEALGVDMIDESEVLTPADEEHHINKWEFSVPFVNGARNLGEALRRTAEGASMIRTKGEAGTGNVSEAVKHMKIINSEIRSLISMSEEDRVKKAREYQVPY 235          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_SULIM (Pyridoxal biosynthesis lyase pdxS OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.262e-58
Identity = 109/202 (53.96%), Postives = 151/202 (74.75%), Query Frame = 3
Query:   93 ITETKKSPFSVKVGLAQML-------RGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            + E KK   +++ G  ++        +GGV+MD+   +QA++AEEAGA AVM L+++P D+R  GGVARM+DP++I E+  S+TIPVMAK RIGH+ EA++LEA+G+D +DESEVLTPADEE+HINK  F +PFV G RNLGEALRR  EGA+MIRTKGEAGTGN+ EAV+H++ +  +IR L +M +++    A++   PY
Sbjct:   34 LPELKKLDSTIQTGTTRVKHAFPIFQKGGVVMDITNVQQAQIAEEAGAVAVMVLDKLPYDVRKSGGVARMADPKIIGEVMNSITIPVMAKVRIGHYYEAKLLEALGVDMIDESEVLTPADEEHHINKWEFSVPFVNGARNLGEALRRTAEGASMIRTKGEAGTGNVSEAVKHMKIINSEIRSLISMSEEDRVKKAREYQVPY 235          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_SULIL (Pyridoxal biosynthesis lyase pdxS OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.262e-58
Identity = 109/202 (53.96%), Postives = 151/202 (74.75%), Query Frame = 3
Query:   93 ITETKKSPFSVKVGLAQML-------RGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            + E KK   +++ G  ++        +GGV+MD+   +QA++AEEAGA AVM L+++P D+R  GGVARM+DP++I E+  S+TIPVMAK RIGH+ EA++LEA+G+D +DESEVLTPADEE+HINK  F +PFV G RNLGEALRR  EGA+MIRTKGEAGTGN+ EAV+H++ +  +IR L +M +++    A++   PY
Sbjct:   34 LPELKKLDSTIQTGTTRVKHAFPIFQKGGVVMDITNVQQAQIAEEAGAVAVMVLDKLPYDVRKSGGVARMADPKIIGEVMNSITIPVMAKVRIGHYYEAKLLEALGVDMIDESEVLTPADEEHHINKWEFSVPFVNGARNLGEALRRTAEGASMIRTKGEAGTGNVSEAVKHMKIINSEIRSLISMSEEDRVKKAREYQVPY 235          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_SULIK (Pyridoxal biosynthesis lyase pdxS OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pdxS PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.262e-58
Identity = 109/202 (53.96%), Postives = 151/202 (74.75%), Query Frame = 3
Query:   93 ITETKKSPFSVKVGLAQML-------RGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            + E KK   +++ G  ++        +GGV+MD+   +QA++AEEAGA AVM L+++P D+R  GGVARM+DP++I E+  S+TIPVMAK RIGH+ EA++LEA+G+D +DESEVLTPADEE+HINK  F +PFV G RNLGEALRR  EGA+MIRTKGEAGTGN+ EAV+H++ +  +IR L +M +++    A++   PY
Sbjct:   34 LPELKKLDSTIQTGTTRVKHAFPIFQKGGVVMDITNVQQAQIAEEAGAVAVMVLDKLPYDVRKSGGVARMADPKIIGEVMNSITIPVMAKVRIGHYYEAKLLEALGVDMIDESEVLTPADEEHHINKWEFSVPFVNGARNLGEALRRTAEGASMIRTKGEAGTGNVSEAVKHMKIINSEIRSLISMSEEDRVKKAREYQVPY 235          
The following BLAST results are available for this feature:
BLAST of CN188576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_THEVO4.122e-6063.78Pyridoxal biosynthesis lyase pdxS OS=Thermoplasma ... [more]
PDXS_THEAC4.122e-6064.32Pyridoxal biosynthesis lyase pdxS OS=Thermoplasma ... [more]
PDXS_SULTO9.184e-6061.36Pyridoxal biosynthesis lyase pdxS OS=Sulfolobus to... [more]
PDXS_HALLT1.199e-5960.31Pyridoxal biosynthesis lyase pdxS OS=Halorubrum la... [more]
PDXS_NATPD5.953e-5961.34Pyridoxal biosynthesis lyase pdxS OS=Natronomonas ... [more]
PDXS_SULSO1.732e-5859.66Pyridoxal biosynthesis lyase pdxS OS=Sulfolobus so... [more]
PDXS_SULIY2.262e-5853.96Pyridoxal biosynthesis lyase pdxS OS=Sulfolobus is... [more]
PDXS_SULIM2.262e-5853.96Pyridoxal biosynthesis lyase pdxS OS=Sulfolobus is... [more]
PDXS_SULIL2.262e-5853.96Pyridoxal biosynthesis lyase pdxS OS=Sulfolobus is... [more]
PDXS_SULIK2.262e-5853.96Pyridoxal biosynthesis lyase pdxS OS=Sulfolobus is... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188576 ID=CN188576; Name=CN188576; organism=Citrus sinensis; type=EST; length=677bp
GCGGTTCTCTTCCTTCGCAACACTTTTTCCTTCTCGCTGTCGGCGTAATG
GCAGGTACCGGAGTGGTGGCGGTCTACGGTAATGACGGCGCTATAACGGA
GACTAAAAAATCTCCATTCTCCGTTAAAGTCGGTCTAGCTCAGATGCTTC
GAGGCGGCGTTATAATGGACGTCGTTACTCCCGAGCAAGCGCGAGTCGCG
GAAGAGGCTGGTGCGTGCGCCGTCATGGCTCTTGAGCGCGTCCCCGCCGA
TATCCGCTCGCAAGGCGGCGTGGCTCGCATGTCTGACCCGCAACTTATCA
AGGAAATCAAACAGTCCGTCACCATCCCCGTCATGGCCAAGGCTCGTATT
GGTCACTTCGTCGAAGCTCAAATTCTCGAAGCTATTGGGATCGATTACGT
CGACGAGAGCGAAGTCTTGACTCCCGCCGACGAAGAGAATCACATCAACA
AGCACAACTTTCGTATCCCCTTCGTATGCGGCTGCCGGAACTTGGGGGAA
GCTTTGAGGAGGATTCGCGAAGGCGCGGCGATGATAAGAACGAAGGGCGA
GGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCGGTCTGTGA
TGGGGGATATTAGGGTTCTGAGGAACATGGACGATGACGAGGTGTTCACT
TTCGCAAAGAAGATAGCGGCGCCGTAC
back to top