CN188576

Overview
NameCN188576
Unique NameCN188576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_THET2 (Pyridoxal biosynthesis lyase pdxS OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=pdxS PE=3 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.660e-75
Identity = 135/191 (70.68%), Postives = 166/191 (86.91%), Query Frame = 3
Query:  105 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            +K  F +K G A+M +GGVIMDV TPEQA +AEEAGA AVMALERVPADIR+QGGVARMSDP++IKEI  +V+IPVMAK RIGHFVEA ILEAIG+D++DESEVLTPADEE+HI+K  F++PFVCG RNLGEALRRI EGAAMIRTKGEAGTGN++EAVRH R++  +IR ++++ +DE+  +AK+I AP+
Sbjct:    2 EKGTFHIKTGFAEMFKGGVIMDVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIGHFVEAMILEAIGVDFIDESEVLTPADEEHHIDKWKFKVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPF 192          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_PARUW (Pyridoxal biosynthesis lyase pdxS OS=Protochlamydia amoebophila (strain UWE25) GN=pdxS PE=3 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.011e-74
Identity = 132/197 (67.01%), Postives = 170/197 (86.29%), Query Frame = 3
Query:   87 GAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            G   +T+K  F +KV LA+ML+GGVIMDV   EQA++AE+AGA AVMALER+P+DIR QGG+ARMS+P+LI++I+++V+IPVMAK RIGHFVEAQILE++ +D++DESEVLTPADEENHI+KH F++PFVCGCR+LGEALRRI EGAAMIRTKGEAGTGN++EAVRH+R++  +IR L  MD  E+   AK++ AP+
Sbjct:    2 GQFNQTEKGSFEIKVALAEMLKGGVIMDVTNSEQAKIAEDAGAVAVMALERIPSDIRVQGGIARMSNPELIQKIQETVSIPVMAKCRIGHFVEAQILESLQVDFIDESEVLTPADEENHIDKHIFKVPFVCGCRDLGEALRRIGEGAAMIRTKGEAGTGNVVEAVRHMRAINREIRHLMLMDSSELMAEAKRLGAPF 198          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_CORGL (Pyridoxal biosynthesis lyase pdxS OS=Corynebacterium glutamicum GN=pdxS PE=1 SV=2)

HSP 1 Score: 279.641 bits (714), Expect = 1.011e-74
Identity = 139/193 (72.02%), Postives = 166/193 (86.01%), Query Frame = 3
Query:   99 ETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            ET ++   VK GLA ML+GGVIMDVVTPEQAR+AE+AGA AVMALERVPADIRSQGGVARMSDP LI+ I  +V+IPVMAKARIGHFVEAQ+LEA+G+D++DESEVL+PAD  +HINK  F +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++ EAVRH+R++ GDI  LR++D+DE+F  AK+  APY
Sbjct:   24 ETYQATTRVKRGLADMLKGGVIMDVVTPEQARIAEDAGASAVMALERVPADIRSQGGVARMSDPDLIEGIVNAVSIPVMAKARIGHFVEAQVLEALGVDFIDESEVLSPADYTHHINKWKFDVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSEAVRHLRTIRGDINRLRSLDEDELFVAAKEFQAPY 216          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDX1_EMENI (Pyridoxine biosynthesis protein pyroA OS=Emericella nidulans GN=pyroA PE=3 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.252e-74
Identity = 141/202 (69.80%), Postives = 168/202 (83.17%), Query Frame = 3
Query:   90 AITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDI----RVLRNMDD--DEVFTFAKKIAAPY 677
            A T    + F+VK GLAQML+GGVIMDVV  EQAR+AEEAGA AVMALERVPADIR+QGGVARMSDP +IKEI ++VTIPVMAKARIGHFVE QILEAIG+DY+DESEVLTPAD   H+ KHNF+ PFVCGCRNLGEALRRI EGAAMIRTKGEAGTG+++EAV+H+R+V  +I     +L++  D   E+  +A+++ APY
Sbjct:    2 AATNGASNDFTVKAGLAQMLKGGVIMDVVNAEQARIAEEAGAAAVMALERVPADIRAQGGVARMSDPSMIKEIMEAVTIPVMAKARIGHFVECQILEAIGVDYIDESEVLTPADNLYHVTKHNFKAPFVCGCRNLGEALRRISEGAAMIRTKGEAGTGDVVEAVKHMRTVNAEIARARAILQSSPDPEPELRAYARELEAPY 203          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_DESDA (Pyridoxal biosynthesis lyase pdxS OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=pdxS PE=3 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.117e-73
Identity = 132/184 (71.74%), Postives = 162/184 (88.04%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            +K GLA+ML+GGVIMDV TPEQA++AEEAGACAVMALERVPADIR+ GGVARM+DP ++K+I +  TIPVMAKARIGHFVEA+ILE++G+DY+DESEVLTPAD++ HI+K +F +PFVCGCRNLGEALRRI EGAAMIRTKGE GTGN++EAVRH R VM ++R+L  + + EV  FAK++ AP
Sbjct:    8 LKTGLAEMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPADIRAAGGVARMADPTIVKKIMEVATIPVMAKARIGHFVEARILESMGVDYIDESEVLTPADDKYHIDKRDFTVPFVCGCRNLGEALRRIAEGAAMIRTKGEPGTGNVVEAVRHCRQVMDEVRMLCALPEAEVPNFAKEMGAP 191          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_CORDI (Pyridoxal biosynthesis lyase pdxS OS=Corynebacterium diphtheriae GN=pdxS PE=3 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.117e-73
Identity = 137/193 (70.98%), Postives = 167/193 (86.53%), Query Frame = 3
Query:   99 ETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            ET  +   VK GLA ML+GGVIMDVVTPEQAR+AE+AGA AVMALERVPADIR+QGGVARMSDP LI+ I  +V+IPVMAKARIGHFVEAQILE++G+D++DESEVL+PAD  NHI+K NF +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++ EAV+H+R++ G+I  LR+MD+D+++  AK+I APY
Sbjct:    4 ETFTATTRVKRGLADMLKGGVIMDVVTPEQARIAEDAGASAVMALERVPADIRAQGGVARMSDPDLIEGIVNAVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLSPADYVNHIDKWNFDVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSEAVKHLRTIRGEINRLRSMDEDQLYVAAKEIQAPY 196          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_NATTJ (Pyridoxal biosynthesis lyase pdxS OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=pdxS PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.906e-73
Identity = 133/191 (69.63%), Postives = 166/191 (86.91%), Query Frame = 3
Query:  105 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            +K   +VK G+AQM +GGVIMDV TPEQA++AE+AGA AVMALE+VPADIR+ GGVARM+DP++IK+I  +V+IPVMAKARIGHFVEA+ILE +G+DY+DESEVLTPADE  HI+K+ F +PFVCG RNLGEALRR+ EGA+M+RTKGEAGTGN++EAVRH+R+VM  IR ++N+ DDE+ T AK I APY
Sbjct:    4 EKGTETVKKGMAQMQKGGVIMDVTTPEQAKIAEKAGAVAVMALEKVPADIRAGGGVARMADPEVIKKIMDAVSIPVMAKARIGHFVEARILENLGVDYIDESEVLTPADEYYHIDKNKFTVPFVCGARNLGEALRRVGEGASMMRTKGEAGTGNVVEAVRHIRTVMDGIRKVQNLPDDELMTEAKNIGAPY 194          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_FRATW (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=pdxS PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.251e-73
Identity = 133/189 (70.37%), Postives = 160/189 (84.66%), Query Frame = 3
Query:  111 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            S  ++K+GLA+ML+GGVIMDVV  EQA +A++AGA AVMALERVPADIR  GG+ARMSDP+LIKEI   V+IPVMAKARIGHFVEAQILE++G+D++DESEVLTPADE NHI+K +F++PFVCGC NLGEALRRI EGAA+IRTKGEAGTGNI+EAVR +R V  DI  ++N D  E+   AK + APY
Sbjct:    2 SDINIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPY 190          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_FRATU (Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Francisella tularensis GN=pdxS PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.251e-73
Identity = 133/189 (70.37%), Postives = 160/189 (84.66%), Query Frame = 3
Query:  111 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            S  ++K+GLA+ML+GGVIMDVV  EQA +A++AGA AVMALERVPADIR  GG+ARMSDP+LIKEI   V+IPVMAKARIGHFVEAQILE++G+D++DESEVLTPADE NHI+K +F++PFVCGC NLGEALRRI EGAA+IRTKGEAGTGNI+EAVR +R V  DI  ++N D  E+   AK + APY
Sbjct:    2 SDINIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPY 190          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_FRATT (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. tularensis GN=pdxS PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.251e-73
Identity = 133/189 (70.37%), Postives = 160/189 (84.66%), Query Frame = 3
Query:  111 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            S  ++K+GLA+ML+GGVIMDVV  EQA +A++AGA AVMALERVPADIR  GG+ARMSDP+LIKEI   V+IPVMAKARIGHFVEAQILE++G+D++DESEVLTPADE NHI+K +F++PFVCGC NLGEALRRI EGAA+IRTKGEAGTGNI+EAVR +R V  DI  ++N D  E+   AK + APY
Sbjct:    2 SDINIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPY 190          
The following BLAST results are available for this feature:
BLAST of CN188576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_THET22.660e-7570.68Pyridoxal biosynthesis lyase pdxS OS=Thermus therm... [more]
PDXS_PARUW1.011e-7467.01Pyridoxal biosynthesis lyase pdxS OS=Protochlamydi... [more]
PDXS_CORGL1.011e-7472.02Pyridoxal biosynthesis lyase pdxS OS=Corynebacteri... [more]
PDX1_EMENI2.252e-7469.80Pyridoxine biosynthesis protein pyroA OS=Emericell... [more]
PDXS_DESDA1.117e-7371.74Pyridoxal biosynthesis lyase pdxS OS=Desulfovibrio... [more]
PDXS_CORDI1.117e-7370.98Pyridoxal biosynthesis lyase pdxS OS=Corynebacteri... [more]
PDXS_NATTJ1.906e-7369.63Pyridoxal biosynthesis lyase pdxS OS=Natranaerobiu... [more]
PDXS_FRATW3.251e-7370.37Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_FRATU3.251e-7370.37Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Fr... [more]
PDXS_FRATT3.251e-7370.37Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188576 ID=CN188576; Name=CN188576; organism=Citrus sinensis; type=EST; length=677bp
GCGGTTCTCTTCCTTCGCAACACTTTTTCCTTCTCGCTGTCGGCGTAATG
GCAGGTACCGGAGTGGTGGCGGTCTACGGTAATGACGGCGCTATAACGGA
GACTAAAAAATCTCCATTCTCCGTTAAAGTCGGTCTAGCTCAGATGCTTC
GAGGCGGCGTTATAATGGACGTCGTTACTCCCGAGCAAGCGCGAGTCGCG
GAAGAGGCTGGTGCGTGCGCCGTCATGGCTCTTGAGCGCGTCCCCGCCGA
TATCCGCTCGCAAGGCGGCGTGGCTCGCATGTCTGACCCGCAACTTATCA
AGGAAATCAAACAGTCCGTCACCATCCCCGTCATGGCCAAGGCTCGTATT
GGTCACTTCGTCGAAGCTCAAATTCTCGAAGCTATTGGGATCGATTACGT
CGACGAGAGCGAAGTCTTGACTCCCGCCGACGAAGAGAATCACATCAACA
AGCACAACTTTCGTATCCCCTTCGTATGCGGCTGCCGGAACTTGGGGGAA
GCTTTGAGGAGGATTCGCGAAGGCGCGGCGATGATAAGAACGAAGGGCGA
GGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCGGTCTGTGA
TGGGGGATATTAGGGTTCTGAGGAACATGGACGATGACGAGGTGTTCACT
TTCGCAAAGAAGATAGCGGCGCCGTAC
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