CN188576

Overview
NameCN188576
Unique NameCN188576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_DESK1 (Pyridoxal biosynthesis lyase pdxS OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=pdxS PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.215e-55
Identity = 108/189 (57.14%), Postives = 140/189 (74.07%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVL----RNMDDDEVFTFAKKIAAPY 677
            VK G   ML+GGVIMDV  PEQA +AEEAGA  VM L+++P D+R  GGVAR +D ++I+E+  S+TIPV AK RIGH  EA++LE +G+D +DESEVLTP DE+ HINK  F+ PFV G R+L EALRRI EGA+MIRTKGE GTGN+ EAV+H++ V  DI +L    RN D + ++ ++K+   PY
Sbjct:   44 VKYGFVSMLKGGVIMDVTNPEQAIIAEEAGAVGVMVLDKLPYDVRMAGGVARTADVKVIEEVMSSITIPVSAKCRIGHEFEARVLEEVGVDLIDESEVLTPVDEKAHINKWLFKTPFVNGARSLPEALRRIYEGASMIRTKGEPGTGNVAEAVKHIKIVNRDIYMLNGYYRNGDVEAIWVYSKENRVPY 232          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_PYRCJ (Pyridoxal biosynthesis lyase pdxS OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.895e-55
Identity = 108/186 (58.06%), Postives = 139/186 (74.73%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVF--TFAKKIAAP 674
            VK+G   MLR GVIMDV   EQA+VAEEAGA  VM L+++P D+R  GGVARM+D ++I+E+  ++TIPV AK RIGHF EA +LE IG+D +DESEVLTP DE++HINK  F+ PFV G R L EALRRI EGA+MIR+KGEAGTGN+ EAV+H +++ G +R L    DDE +   +A++   P
Sbjct:   47 VKLGFIAMLRRGVIMDVTNVEQAQVAEEAGAVGVMVLDKLPYDVRKAGGVARMADLKIIEEVMDAITIPVSAKVRIGHFYEAVLLEQIGVDLIDESEVLTPVDEQHHINKWLFKTPFVNGARELCEALRRISEGASMIRSKGEAGTGNVAEAVKHFKAIYGAVRDLTAHRDDEEYLRDYARRCQVP 232          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_PYRAR (Pyridoxal biosynthesis lyase pdxS OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=pdxS PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.284e-53
Identity = 107/200 (53.50%), Postives = 142/200 (71.00%), Query Frame = 3
Query:   75 YGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            Y  +G    T K    VK G   MLR GVIMDV   EQA++AEEAGA  VM L+++P D+R  GGVARM+D ++I+E+   VTIPV AK RIGH+ EA +L+ IG+D +DESEVLTP D+++HINK  F +PFV GCR L EALRRI EGA+MIR+KGEAGTGN+ EAV+H +++   I  L   +++ +  +A++  AP
Sbjct:   38 YPAEGVAAGTVK----VKAGFPAMLRNGVIMDVTNVEQAQIAEEAGAVGVMVLDKLPYDVRKAGGVARMADLKVIEEVMSHVTIPVSAKVRIGHYYEAFLLQEIGVDLIDESEVLTPVDDQHHINKWLFTVPFVNGCRELCEALRRISEGASMIRSKGEAGTGNVSEAVKHFKALYRAINELAAAEEERLRDYARQCQAP 233          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_HYPBU (Pyridoxal biosynthesis lyase pdxS OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=pdxS PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.325e-53
Identity = 104/189 (55.03%), Postives = 138/189 (73.02%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNM----DDDEVFTFAKKIAAPY 677
            V+ G   ML+GGV+MDV   +QA +AE+AGA  VM L+++P D+R  GGVAR +D  +I+ + +++TIPV AK RIGH+ EA++LE IG+D +DESEVLTP DE+ HI K  FR+PFV G R+L EALRRI EGA+MIRTKGEAGTGN+ EAVRH+++V  DI VLR      D + +  +AK    P+
Sbjct:   44 VRYGFISMLKGGVVMDVTNEQQAEIAEDAGAVGVMVLDKLPYDVRKAGGVARTADLNVIRAVMETITIPVSAKCRIGHYWEAKLLEEIGVDLIDESEVLTPTDEKAHIWKWEFRVPFVNGARSLPEALRRIWEGASMIRTKGEAGTGNVAEAVRHMKAVNRDIAVLRGYYKAGDIEAIRLYAKSNNVPF 232          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_CLONO (Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Clostridium novyi GN=pdxS PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.625e-48
Identity = 94/135 (69.63%), Postives = 112/135 (82.96%), Query Frame = 3
Query:  273 ARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            +RMSDP++IKEI  +V+IPVMAK RIGH VEAQIL+AIGIDY+DESEVLTPAD+  HINK  F +PFVCG RNLGEALRRI EGA MIRTKGEAGTGN+IEAVRH+R++   IR L+ M  +E+   AK++ APY
Sbjct:    1 SRMSDPKMIKEIIDAVSIPVMAKVRIGHVVEAQILQAIGIDYIDESEVLTPADDLFHINKKEFNVPFVCGARNLGEALRRIGEGACMIRTKGEAGTGNVIEAVRHMRTIQSQIRKLKVMPKEELMIAAKELGAPY 135          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDX1_STELP (Probable pyridoxal biosynthesis protein PDX1 (Fragment) OS=Stellaria longipes PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.506e-43
Identity = 91/132 (68.94%), Postives = 105/132 (79.55%), Query Frame = 3
Query:  294 LIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCR----NLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            LIKEIK +VTIPVMAKARIGHFVEAQILE+IG+DYVDESEVLTPADE++HINKHNF+IPFVCG          A RR   G        +  TGN++EAVRH+RSVMG+IR+LRNMDDDEVF +AKKI+A Y
Sbjct:    1 LIKEIKAAVTIPVMAKARIGHFVEAQILESIGVDYVDESEVLTPADEDHHINKHNFQIPFVCGLSIPRGAPPPAYRRGYAGHDTGPRVRKPSTGNVVEAVRHIRSVMGEIRLLRNMDDDEVFAYAKKISAAY 132          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_METVA (Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Methanococcus vannielii GN=pdxS PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.612e-42
Identity = 82/105 (78.10%), Postives = 94/105 (89.52%), Query Frame = 3
Query:  285 DPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSV 599
            DP +I EIK +V+IPVMAKARIGHFVEAQ+LE+IG+D +DESEVLTPADE NHINK  F  PFVCG RNLGEALRRI EGAAMIRTKGEAGTGN++EAV+H+R+V
Sbjct:    1 DPDMIFEIKDAVSIPVMAKARIGHFVEAQVLESIGVDMIDESEVLTPADEINHINKKAFTAPFVCGARNLGEALRRIDEGAAMIRTKGEAGTGNVVEAVKHMRAV 105          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXL4_ARATH (Probable PDX1-like protein 4 OS=Arabidopsis thaliana GN=PDX1L4 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.592e-25
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 3
Query:   75 YGNDGAITETK-KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVAR 278
            YG +GA+TETK KSPFSVKVGLAQMLRGGVIMDVV  EQAR+AEEAGACAVMALERVPADIR+QGGVAR
Sbjct:   10 YG-EGAMTETKQKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVMALERVPADIRAQGGVAR 77          
The following BLAST results are available for this feature:
BLAST of CN188576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_DESK15.215e-5557.14Pyridoxal biosynthesis lyase pdxS OS=Desulfurococc... [more]
PDXS_PYRCJ8.895e-5558.06Pyridoxal biosynthesis lyase pdxS OS=Pyrobaculum c... [more]
PDXS_PYRAR1.284e-5353.50Pyridoxal biosynthesis lyase pdxS OS=Pyrobaculum a... [more]
PDXS_HYPBU8.325e-5355.03Pyridoxal biosynthesis lyase pdxS OS=Hyperthermus ... [more]
PDXS_CLONO1.625e-4869.63Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Cl... [more]
PDX1_STELP3.506e-4368.94Probable pyridoxal biosynthesis protein PDX1 (Frag... [more]
PDXS_METVA6.612e-4278.10Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Me... [more]
PDXL4_ARATH9.592e-2588.41Probable PDX1-like protein 4 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188576 ID=CN188576; Name=CN188576; organism=Citrus sinensis; type=EST; length=677bp
GCGGTTCTCTTCCTTCGCAACACTTTTTCCTTCTCGCTGTCGGCGTAATG
GCAGGTACCGGAGTGGTGGCGGTCTACGGTAATGACGGCGCTATAACGGA
GACTAAAAAATCTCCATTCTCCGTTAAAGTCGGTCTAGCTCAGATGCTTC
GAGGCGGCGTTATAATGGACGTCGTTACTCCCGAGCAAGCGCGAGTCGCG
GAAGAGGCTGGTGCGTGCGCCGTCATGGCTCTTGAGCGCGTCCCCGCCGA
TATCCGCTCGCAAGGCGGCGTGGCTCGCATGTCTGACCCGCAACTTATCA
AGGAAATCAAACAGTCCGTCACCATCCCCGTCATGGCCAAGGCTCGTATT
GGTCACTTCGTCGAAGCTCAAATTCTCGAAGCTATTGGGATCGATTACGT
CGACGAGAGCGAAGTCTTGACTCCCGCCGACGAAGAGAATCACATCAACA
AGCACAACTTTCGTATCCCCTTCGTATGCGGCTGCCGGAACTTGGGGGAA
GCTTTGAGGAGGATTCGCGAAGGCGCGGCGATGATAAGAACGAAGGGCGA
GGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCGGTCTGTGA
TGGGGGATATTAGGGTTCTGAGGAACATGGACGATGACGAGGTGTTCACT
TTCGCAAAGAAGATAGCGGCGCCGTAC
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