CN188576

Overview
NameCN188576
Unique NameCN188576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2621 contig Csv1_Contig2621:11..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_FRATO (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=pdxS PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.251e-73
Identity = 133/189 (70.37%), Postives = 160/189 (84.66%), Query Frame = 3 
Query:  111 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            S  ++K+GLA+ML+GGVIMDVV  EQA +A++AGA AVMALERVPADIR  GG+ARMSDP+LIKEI   V+IPVMAKARIGHFVEAQILE++G+D++DESEVLTPADE NHI+K +F++PFVCGC NLGEALRRI EGAA+IRTKGEAGTGNI+EAVR +R V  DI  ++N D  E+   AK + APY
Sbjct:    2 SDINIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPY 190
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_FRATN (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. novicida (strain U112) GN=pdxS PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.251e-73
Identity = 133/189 (70.37%), Postives = 160/189 (84.66%), Query Frame = 3 
Query:  111 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            S  ++K+GLA+ML+GGVIMDVV  EQA +A++AGA AVMALERVPADIR  GG+ARMSDP+LIKEI   V+IPVMAKARIGHFVEAQILE++G+D++DESEVLTPADE NHI+K +F++PFVCGC NLGEALRRI EGAA+IRTKGEAGTGNI+EAVR +R V  DI  ++N D  E+   AK + APY
Sbjct:    2 SDINIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPY 190
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_FRATM (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=pdxS PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.251e-73
Identity = 133/189 (70.37%), Postives = 160/189 (84.66%), Query Frame = 3 
Query:  111 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            S  ++K+GLA+ML+GGVIMDVV  EQA +A++AGA AVMALERVPADIR  GG+ARMSDP+LIKEI   V+IPVMAKARIGHFVEAQILE++G+D++DESEVLTPADE NHI+K +F++PFVCGC NLGEALRRI EGAA+IRTKGEAGTGNI+EAVR +R V  DI  ++N D  E+   AK + APY
Sbjct:    2 SDINIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPY 190
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_FRATH (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. holarctica (strain LVS) GN=pdxS PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.251e-73
Identity = 133/189 (70.37%), Postives = 160/189 (84.66%), Query Frame = 3 
Query:  111 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            S  ++K+GLA+ML+GGVIMDVV  EQA +A++AGA AVMALERVPADIR  GG+ARMSDP+LIKEI   V+IPVMAKARIGHFVEAQILE++G+D++DESEVLTPADE NHI+K +F++PFVCGC NLGEALRRI EGAA+IRTKGEAGTGNI+EAVR +R V  DI  ++N D  E+   AK + APY
Sbjct:    2 SDINIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPY 190
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_FRATF (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=pdxS PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.251e-73
Identity = 133/189 (70.37%), Postives = 160/189 (84.66%), Query Frame = 3 
Query:  111 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            S  ++K+GLA+ML+GGVIMDVV  EQA +A++AGA AVMALERVPADIR  GG+ARMSDP+LIKEI   V+IPVMAKARIGHFVEAQILE++G+D++DESEVLTPADE NHI+K +F++PFVCGC NLGEALRRI EGAA+IRTKGEAGTGNI+EAVR +R V  DI  ++N D  E+   AK + APY
Sbjct:    2 SDINIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPY 190
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_FRAT1 (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=pdxS PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.251e-73
Identity = 133/189 (70.37%), Postives = 160/189 (84.66%), Query Frame = 3 
Query:  111 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            S  ++K+GLA+ML+GGVIMDVV  EQA +A++AGA AVMALERVPADIR  GG+ARMSDP+LIKEI   V+IPVMAKARIGHFVEAQILE++G+D++DESEVLTPADE NHI+K +F++PFVCGC NLGEALRRI EGAA+IRTKGEAGTGNI+EAVR +R V  DI  ++N D  E+   AK + APY
Sbjct:    2 SDINIKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVVSIPVMAKARIGHFVEAQILESLGVDFIDESEVLTPADELNHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPY 190
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_DICT6 (Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=pdxS PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.251e-73
Identity = 135/184 (73.37%), Postives = 160/184 (86.96%), Query Frame = 3 
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            VK GLAQML+GGVIMDV   EQA +AEEAGA AVMALERVPADIR+QGGVARM+DP+ IKEI  +V+IPVMAK RIGHFVEAQILEA+G+D++DESEVLTPADE+ HINKH F++PFVCG R+LGEALRRI EGAAMIRTKGEAGTGN++EAVRH+R +M +IR L  + D+E+   AK++ AP
Sbjct:   10 VKRGLAQMLKGGVIMDVTNAEQAEIAEEAGAVAVMALERVPADIRAQGGVARMADPKKIKEIMSAVSIPVMAKVRIGHFVEAQILEALGVDFIDESEVLTPADEKYHINKHLFKVPFVCGARDLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQIMDEIRALALLPDEELVAKAKELGAP 193
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_CLOAB (Pyridoxal biosynthesis lyase pdxS OS=Clostridium acetobutylicum GN=pdxS PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.251e-73
Identity = 131/181 (72.38%), Postives = 162/181 (89.50%), Query Frame = 3 
Query:  135 LAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            LAQML+GGVIMDV+  EQA +AE+AGACAVMALERVPADIR QGGVARMSDP++IKEI++SVTIPVMAK RIGHFVEA+IL+++GID++DESEVLTPAD+  HI+K  F++PFVCG RNLGEALRRI EGA+MIRTKGEAGTGN++EAV+H+R+VM +IR ++N   +E+ T AK++ APY
Sbjct:   12 LAQMLKGGVIMDVINKEQAIIAEKAGACAVMALERVPADIRKQGGVARMSDPKMIKEIRESVTIPVMAKVRIGHFVEAEILQSLGIDFIDESEVLTPADDSYHIDKKAFKVPFVCGARNLGEALRRIGEGASMIRTKGEAGTGNVVEAVKHMRTVMDEIRRVKNAAKEEIMTIAKELGAPY 192
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_DICTD (Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=pdxS PE=3 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.614e-72
Identity = 134/184 (72.83%), Postives = 160/184 (86.96%), Query Frame = 3 
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            VK GLAQML+GGVIMDV   EQA +AEEAGA AVMALERVPADIR++GGVARM+DP+ IKEI  +V+IPVMAK RIGHFVEAQILEA+G+D++DESEVLTPADE+ HINKH F++PFVCG R+LGEALRRI EGAAMIRTKGEAGTGN++EAVRH+R +M +IR L  + D+E+   AK++ AP
Sbjct:   10 VKRGLAQMLKGGVIMDVTNAEQAEIAEEAGAVAVMALERVPADIRAEGGVARMADPKKIKEIMSAVSIPVMAKVRIGHFVEAQILEALGVDFIDESEVLTPADEKYHINKHAFKVPFVCGARDLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQIMDEIRSLVLLPDEELVAKAKELGAP 193
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDX1_CERNC (Pyridoxine biosynthesis protein PDX1 OS=Cercospora nicotianae GN=PDX1 PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.614e-72
Identity = 133/190 (70.00%), Postives = 161/190 (84.74%), Query Frame = 3 
Query:  108 KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            +S F+VKVGLAQML+GGVIMDVV  EQAR+AEEAGACAVMALERVPADIR  GGVARMSDPQ+IK+I  +VTIPVMAK+RIGHFVE QIL+AIG+DY+DESEVLTPAD  NHI+K  + +PFVCGC+NLGEALRRI EGAAMIRTKGEAGTG+++EAVRH+++V  +I    +  D ++   A+++   Y
Sbjct:   53 QSSFAVKVGLAQMLKGGVIMDVVNAEQARIAEEAGACAVMALERVPADIRKDGGVARMSDPQMIKDIMNAVTIPVMAKSRIGHFVECQILQAIGVDYIDESEVLTPADPVNHIDKSVYNVPFVCGCKNLGEALRRISEGAAMIRTKGEAGTGDVVEAVRHMQTVNAEIAKASSASDADLRMMARELQCDY 242
The following BLAST results are available for this feature:
BLAST of CN188576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_FRATO3.251e-7370.37Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_FRATN3.251e-7370.37Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_FRATM3.251e-7370.37Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_FRATH3.251e-7370.37Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_FRATF3.251e-7370.37Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_FRAT13.251e-7370.37Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_DICT63.251e-7373.37Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus ... [more]
PDXS_CLOAB3.251e-7372.38Pyridoxal biosynthesis lyase pdxS OS=Clostridium a... [more]
PDXS_DICTD1.614e-7272.83Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus ... [more]
PDX1_CERNC1.614e-7270.00Pyridoxine biosynthesis protein PDX1 OS=Cercospora... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188576 ID=CN188576; Name=CN188576; organism=Citrus sinensis; type=EST; length=677bp
GCGGTTCTCTTCCTTCGCAACACTTTTTCCTTCTCGCTGTCGGCGTAATG
GCAGGTACCGGAGTGGTGGCGGTCTACGGTAATGACGGCGCTATAACGGA
GACTAAAAAATCTCCATTCTCCGTTAAAGTCGGTCTAGCTCAGATGCTTC
GAGGCGGCGTTATAATGGACGTCGTTACTCCCGAGCAAGCGCGAGTCGCG
GAAGAGGCTGGTGCGTGCGCCGTCATGGCTCTTGAGCGCGTCCCCGCCGA
TATCCGCTCGCAAGGCGGCGTGGCTCGCATGTCTGACCCGCAACTTATCA
AGGAAATCAAACAGTCCGTCACCATCCCCGTCATGGCCAAGGCTCGTATT
GGTCACTTCGTCGAAGCTCAAATTCTCGAAGCTATTGGGATCGATTACGT
CGACGAGAGCGAAGTCTTGACTCCCGCCGACGAAGAGAATCACATCAACA
AGCACAACTTTCGTATCCCCTTCGTATGCGGCTGCCGGAACTTGGGGGAA
GCTTTGAGGAGGATTCGCGAAGGCGCGGCGATGATAAGAACGAAGGGCGA
GGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCGGTCTGTGA
TGGGGGATATTAGGGTTCTGAGGAACATGGACGATGACGAGGTGTTCACT
TTCGCAAAGAAGATAGCGGCGCCGTAC
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