CN188576

Overview
NameCN188576
Unique NameCN188576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_SYNAS (Pyridoxal biosynthesis lyase pdxS OS=Syntrophus aciditrophicus (strain SB) GN=pdxS PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.107e-72
Identity = 140/190 (73.68%), Postives = 159/190 (83.68%), Query Frame = 3
Query:  108 KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            K  + + V LAQML+GGVIMDV   EQAR+AE+AGA AVMALERVPADIR+QGGVARMSDP +I EIK+SV+IPVMAKARIGHFVEAQILEA+ IDY+DESEVLTPADEE HI+K  F IPFVCG RNLGEALRRI EGAAMIRTKGEAGTGN++EAVRH+R++  +IR L  M  +EV  FAK    PY
Sbjct:    3 KKRYELNVQLAQMLKGGVIMDVTNVEQARIAEDAGAVAVMALERVPADIRAQGGVARMSDPSMIVEIKKSVSIPVMAKARIGHFVEAQILEALKIDYIDESEVLTPADEECHIDKTRFSIPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRTMNREIRQLVGMPVEEVTVFAKSNGIPY 192          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDX1_SUBDO (Probable pyridoxine biosynthesis SNZERR OS=Suberites domuncula GN=SNZERR PE=2 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 4.695e-72
Identity = 128/195 (65.64%), Postives = 162/195 (83.08%), Query Frame = 3
Query:   90 AITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            A +ET+    +VK GLAQML+GG+IMDV+  +QARVAEEAGACAVMALE+VPADIR  GGVARM+DP+ IKEI  +VT+PVMAK RIGHF EAQIL+ +G+D++DESEVL+PAD+ENH++K  F +PFVCG R+LGEALRRI EGAAMIRTKGEAGTGN++EAVRH R +  +IRV + +   E++ +AK++  P
Sbjct:    8 ATSETQTGTMTVKTGLAQMLKGGIIMDVINADQARVAEEAGACAVMALEKVPADIRKDGGVARMADPRKIKEIMDTVTVPVMAKCRIGHFAEAQILQNLGVDFIDESEVLSPADDENHVDKQPFNVPFVCGARSLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHARQINREIRVAQCLSSAELYGYAKQLGVP 202          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_THETN (Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerobacter tengcongensis GN=pdxS PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.366e-71
Identity = 130/187 (69.52%), Postives = 162/187 (86.63%), Query Frame = 3
Query:  117 FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            + +   LAQML+GGVIMDV TPE+A +AE+AGA AVMALERVPADIR++GGVARMSDP++IKEIK +V+IPVMAK RIGHFVEAQILEA+GID++DESEVLTPADE  HINK +F++PFVCG +NLGEALRRI EGA+MIRTKGEAGTGN++EAVRH+R +  +I+ L  + ++E+   AK++ APY
Sbjct:    5 YELNKNLAQMLKGGVIMDVTTPEEAIIAEKAGAVAVMALERVPADIRARGGVARMSDPKIIKEIKAAVSIPVMAKVRIGHFVEAQILEALGIDFIDESEVLTPADEMYHINKWDFKVPFVCGAKNLGEALRRIAEGASMIRTKGEAGTGNVVEAVRHMRMINAEIKRLTTLGEEELMAAAKELQAPY 191          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_THEPX (Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerobacter sp. (strain X514) GN=pdxS PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.366e-71
Identity = 133/187 (71.12%), Postives = 161/187 (86.10%), Query Frame = 3
Query:  117 FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            + +   LAQML+GGVIMDV TPEQA +AE+AGA AVMALERVPADIR++GGVARMSDP++IKEIK +V+IPVMAK RIGHFVEAQILEA+GID++DESEVLTPADE  HI+K  F+IPFVCG RNLGEALRRI EGA+MIRTKGEAGTGN++EAVRH+R +  +I+ L  + +DE+   AK++ APY
Sbjct:    5 YELNKNLAQMLKGGVIMDVTTPEQAVIAEKAGAVAVMALERVPADIRARGGVARMSDPKIIKEIKAAVSIPVMAKVRIGHFVEAQILEALGIDFIDESEVLTPADEMYHIDKWAFKIPFVCGARNLGEALRRIGEGASMIRTKGEAGTGNVVEAVRHMRIINAEIKRLTTLREDELMAAAKELQAPY 191          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_THEP3 (Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=pdxS PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.366e-71
Identity = 133/187 (71.12%), Postives = 161/187 (86.10%), Query Frame = 3
Query:  117 FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            + +   LAQML+GGVIMDV TPEQA +AE+AGA AVMALERVPADIR++GGVARMSDP++IKEIK +V+IPVMAK RIGHFVEAQILEA+GID++DESEVLTPADE  HI+K  F+IPFVCG RNLGEALRRI EGA+MIRTKGEAGTGN++EAVRH+R +  +I+ L  + +DE+   AK++ APY
Sbjct:    5 YELNKNLAQMLKGGVIMDVTTPEQAVIAEKAGAVAVMALERVPADIRARGGVARMSDPKIIKEIKAAVSIPVMAKVRIGHFVEAQILEALGIDFIDESEVLTPADEMYHIDKWAFKIPFVCGARNLGEALRRIGEGASMIRTKGEAGTGNVVEAVRHMRIINAEIKRLTTLREDELMAAAKELQAPY 191          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_FRAP2 (Pyridoxal biosynthesis lyase pdxS OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=pdxS PE=3 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.043e-71
Identity = 130/189 (68.78%), Postives = 157/189 (83.07%), Query Frame = 3
Query:  111 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            S  ++K+GLA+ML+GGVIMDVV  EQA +A++AGA AVMALERVPADIR  GG+ARMSDP+LIKEI    +IPVMAKARIGHFVEAQILE++G+D++DESEVL+PAD+ NHI K NF++PFVCGC NLGEALRRI EGAA+IRTKGEAGTGNI+EAVR +R V  DI  ++  D  E+   AK + APY
Sbjct:    2 SDINLKIGLAEMLKGGVIMDVVNAEQAEIAQQAGAVAVMALERVPADIRKDGGIARMSDPKLIKEIMSVTSIPVMAKARIGHFVEAQILESLGVDFIDESEVLSPADDLNHIAKDNFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKGADQSELMAIAKNMQAPY 190          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_BACP2 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus pumilus (strain SAFR-032) GN=pdxS PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.974e-71
Identity = 128/192 (66.67%), Postives = 161/192 (83.85%), Query Frame = 3
Query:  102 TKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            + K    VK G+A+M +GGVIMDVV  EQA++AEEAGA AVMALERVPADIR+ GGVARM+DP++++E++ +VTIPVMAKARIGH VEA++LEA+G+DY+DESEVLTPADEE H+NK+ + +PFVCGCR+LGEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V   IR +  M +DE+ T AK + APY
Sbjct:    2 SNKGTERVKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPRIVEEVQNAVTIPVMAKARIGHIVEARVLEALGVDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVAAMSEDELMTEAKNLGAPY 193          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_STAAW (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain MW2) GN=pdxS PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.191e-71
Identity = 128/185 (69.19%), Postives = 157/185 (84.86%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+M +GGVIMDVV  EQAR+AEEAGA AVMALERVP+DIR+ GGVARM++P++++E+  +V+IPVMAKARIGH  EA++LEA+G+DY+DESEVLTPADEE H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ TFAK I APY
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPY 194          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_STAAT (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=pdxS PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.191e-71
Identity = 128/185 (69.19%), Postives = 157/185 (84.86%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+M +GGVIMDVV  EQAR+AEEAGA AVMALERVP+DIR+ GGVARM++P++++E+  +V+IPVMAKARIGH  EA++LEA+G+DY+DESEVLTPADEE H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ TFAK I APY
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPY 194          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_STAAS (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain MSSA476) GN=pdxS PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.191e-71
Identity = 128/185 (69.19%), Postives = 157/185 (84.86%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+M +GGVIMDVV  EQAR+AEEAGA AVMALERVP+DIR+ GGVARM++P++++E+  +V+IPVMAKARIGH  EA++LEA+G+DY+DESEVLTPADEE H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ TFAK I APY
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPY 194          
The following BLAST results are available for this feature:
BLAST of CN188576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_SYNAS2.107e-7273.68Pyridoxal biosynthesis lyase pdxS OS=Syntrophus ac... [more]
PDX1_SUBDO4.695e-7265.64Probable pyridoxine biosynthesis SNZERR OS=Suberit... [more]
PDXS_THETN1.366e-7169.52Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerob... [more]
PDXS_THEPX1.366e-7171.12Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerob... [more]
PDXS_THEP31.366e-7171.12Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerob... [more]
PDXS_FRAP23.043e-7168.78Pyridoxal biosynthesis lyase pdxS OS=Francisella p... [more]
PDXS_BACP23.974e-7166.67Pyridoxal biosynthesis lyase pdxS OS=Bacillus pumi... [more]
PDXS_STAAW5.191e-7169.19Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAAT5.191e-7169.19Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAAS5.191e-7169.19Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188576 ID=CN188576; Name=CN188576; organism=Citrus sinensis; type=EST; length=677bp
GCGGTTCTCTTCCTTCGCAACACTTTTTCCTTCTCGCTGTCGGCGTAATG
GCAGGTACCGGAGTGGTGGCGGTCTACGGTAATGACGGCGCTATAACGGA
GACTAAAAAATCTCCATTCTCCGTTAAAGTCGGTCTAGCTCAGATGCTTC
GAGGCGGCGTTATAATGGACGTCGTTACTCCCGAGCAAGCGCGAGTCGCG
GAAGAGGCTGGTGCGTGCGCCGTCATGGCTCTTGAGCGCGTCCCCGCCGA
TATCCGCTCGCAAGGCGGCGTGGCTCGCATGTCTGACCCGCAACTTATCA
AGGAAATCAAACAGTCCGTCACCATCCCCGTCATGGCCAAGGCTCGTATT
GGTCACTTCGTCGAAGCTCAAATTCTCGAAGCTATTGGGATCGATTACGT
CGACGAGAGCGAAGTCTTGACTCCCGCCGACGAAGAGAATCACATCAACA
AGCACAACTTTCGTATCCCCTTCGTATGCGGCTGCCGGAACTTGGGGGAA
GCTTTGAGGAGGATTCGCGAAGGCGCGGCGATGATAAGAACGAAGGGCGA
GGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCGGTCTGTGA
TGGGGGATATTAGGGTTCTGAGGAACATGGACGATGACGAGGTGTTCACT
TTCGCAAAGAAGATAGCGGCGCCGTAC
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