CN188576

Overview
NameCN188576
Unique NameCN188576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_DEIRA (Pyridoxal biosynthesis lyase pdxS OS=Deinococcus radiodurans GN=pdxS PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 6.779e-71
Identity = 129/195 (66.15%), Postives = 163/195 (83.59%), Query Frame = 3
Query:   93 ITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            +TE +     +K G A+M +GGVIMDVVT +QAR+AE AGA AVMALERVPADIR  GGVARMSDP++I+EI  +V+IPVMAK RIGH VEAQIL+AIG+D++DESEVLTPADE+ HI K +F++PFVCG +NLGEALRR+ EGA+MIRTKGEAGTGN++EAVRH R+V+GDIR +++   +E+ T A+ + APY
Sbjct:   12 MTEQQTGTPQLKQGFAEMFKGGVIMDVVTADQARIAEAAGATAVMALERVPADIRKDGGVARMSDPKMIREIMAAVSIPVMAKVRIGHVVEAQILQAIGVDFIDESEVLTPADEQFHILKRDFKVPFVCGAKNLGEALRRVGEGASMIRTKGEAGTGNVVEAVRHARAVLGDIRAVQSRPAEELMTVARDLQAPY 206          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_CLOBM (Pyridoxal biosynthesis lyase pdxS OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=pdxS PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 8.854e-71
Identity = 130/187 (69.52%), Postives = 160/187 (85.56%), Query Frame = 3
Query:  117 FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            + +   LAQML+ GVIMDVV PEQA++AEEAGA AVMALERVP+DIR QGGVAR SDP++IKEI  +V+IPVMAK RIGHFVEAQILEAIG+DY+DESEVLTPAD+  HINK +F++PFVCG RNLGEALRRI EGA+MIRTKGEAGTGN++EAVRH+R++  ++R L+    +E+ T AK++ AP+
Sbjct:    5 YELNKNLAQMLKDGVIMDVVNPEQAKIAEEAGAVAVMALERVPSDIRKQGGVARTSDPKMIKEIINAVSIPVMAKVRIGHFVEAQILEAIGVDYIDESEVLTPADDLFHINKKDFKVPFVCGARNLGEALRRIGEGASMIRTKGEAGTGNVVEAVRHMRTISSEMRKLQLTPKEELMTVAKEMGAPF 191          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_BACLD (Pyridoxal biosynthesis lyase pdxS OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=pdxS PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 8.854e-71
Identity = 127/185 (68.65%), Postives = 157/185 (84.86%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+M +GGVIMDVV  EQA++AEEAGA AVMALERVPADIR+ GGVARM+DP +++E+  +V+IPVMAKARIGH VEA++LEA+G+DY+DESEVLTPADEE H+NK+ F +PFVCGCR+LGEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V   +R +  M DDE+ T AK + APY
Sbjct:    9 VKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEALGVDYIDESEVLTPADEEFHLNKNEFTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVGMSDDELMTEAKNLGAPY 193          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_MYCS2 (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium smegmatis GN=pdxS PE=3 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.510e-70
Identity = 131/185 (70.81%), Postives = 158/185 (85.41%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+ML+GGVIMDVVTPEQAR+AE AGA AVMALERVPADIR+QGGV+RMSDP +I+ I  +VTIPVMAKARIGHFVEAQIL+++G+DYVDESEVLTPAD  NHI+K  F +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R + G+IR L +M +DE++  AK++ APY
Sbjct:   18 VKRGMAEMLKGGVIMDVVTPEQARIAEAAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGIIDAVTIPVMAKARIGHFVEAQILQSLGVDYVDESEVLTPADYTNHIDKWKFTVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSNATTHMRKIGGEIRRLTSMSEDELYVAAKELQAPY 202          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_CLOCE (Pyridoxal biosynthesis lyase pdxS OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=pdxS PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.576e-70
Identity = 126/187 (67.38%), Postives = 159/187 (85.03%), Query Frame = 3
Query:  117 FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            + +   LAQML+GGVIMDVV  ++A +A++AGA AVMALERVP+DIR  GGVARMSDP++IK+I+ +V+IPVMAK RIGHFVEAQ+LEA+ IDY+DESEVLTPADEE HI+KH F++PFVCG +NLGEALRRI EGA+MIRTKGEAGTGN++EAVRH+R+V  +IR +++    E+ T AK+  APY
Sbjct:    5 YQLNKNLAQMLKGGVIMDVVNAKEAEIAQKAGAVAVMALERVPSDIRKAGGVARMSDPKMIKDIQSAVSIPVMAKVRIGHFVEAQVLEALSIDYIDESEVLTPADEEFHIDKHTFKVPFVCGAKNLGEALRRISEGASMIRTKGEAGTGNVVEAVRHMRTVTNEIRKVQSASKQELMTIAKEFGAPY 191          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_MYCTU (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium tuberculosis GN=pdxS PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.364e-70
Identity = 130/185 (70.27%), Postives = 158/185 (85.41%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+ML+GGVIMDVVTPEQAR+AE AGA AVMALERVPADIR+QGGV+RMSDP +I+ I  +VTIPVMAK RIGHFVEAQIL+ +G+DY+DESEVLTPAD  +HI+K NF +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R++ G+IR L +M +DE+F  AK++ APY
Sbjct:   14 VKRGMAEMLKGGVIMDVVTPEQARIAEGAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGIIAAVTIPVMAKVRIGHFVEAQILQTLGVDYIDESEVLTPADYAHHIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGEAGTGDVSNATTHMRAIGGEIRRLTSMSEDELFVAAKELQAPY 198          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_MYCTA (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=pdxS PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.364e-70
Identity = 130/185 (70.27%), Postives = 158/185 (85.41%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+ML+GGVIMDVVTPEQAR+AE AGA AVMALERVPADIR+QGGV+RMSDP +I+ I  +VTIPVMAK RIGHFVEAQIL+ +G+DY+DESEVLTPAD  +HI+K NF +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R++ G+IR L +M +DE+F  AK++ APY
Sbjct:   14 VKRGMAEMLKGGVIMDVVTPEQARIAEGAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGIIAAVTIPVMAKVRIGHFVEAQILQTLGVDYIDESEVLTPADYAHHIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGEAGTGDVSNATTHMRAIGGEIRRLTSMSEDELFVAAKELQAPY 198          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_MYCBT (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=pdxS PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.364e-70
Identity = 130/185 (70.27%), Postives = 158/185 (85.41%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+ML+GGVIMDVVTPEQAR+AE AGA AVMALERVPADIR+QGGV+RMSDP +I+ I  +VTIPVMAK RIGHFVEAQIL+ +G+DY+DESEVLTPAD  +HI+K NF +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R++ G+IR L +M +DE+F  AK++ APY
Sbjct:   14 VKRGMAEMLKGGVIMDVVTPEQARIAEGAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGIIAAVTIPVMAKVRIGHFVEAQILQTLGVDYIDESEVLTPADYAHHIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGEAGTGDVSNATTHMRAIGGEIRRLTSMSEDELFVAAKELQAPY 198          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_MYCBP (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=pdxS PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.364e-70
Identity = 130/185 (70.27%), Postives = 158/185 (85.41%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+ML+GGVIMDVVTPEQAR+AE AGA AVMALERVPADIR+QGGV+RMSDP +I+ I  +VTIPVMAK RIGHFVEAQIL+ +G+DY+DESEVLTPAD  +HI+K NF +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R++ G+IR L +M +DE+F  AK++ APY
Sbjct:   14 VKRGMAEMLKGGVIMDVVTPEQARIAEGAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGIIAAVTIPVMAKVRIGHFVEAQILQTLGVDYIDESEVLTPADYAHHIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGEAGTGDVSNATTHMRAIGGEIRRLTSMSEDELFVAAKELQAPY 198          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_MYCBO (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium bovis GN=pdxS PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.364e-70
Identity = 130/185 (70.27%), Postives = 158/185 (85.41%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+ML+GGVIMDVVTPEQAR+AE AGA AVMALERVPADIR+QGGV+RMSDP +I+ I  +VTIPVMAK RIGHFVEAQIL+ +G+DY+DESEVLTPAD  +HI+K NF +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R++ G+IR L +M +DE+F  AK++ APY
Sbjct:   14 VKRGMAEMLKGGVIMDVVTPEQARIAEGAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGIIAAVTIPVMAKVRIGHFVEAQILQTLGVDYIDESEVLTPADYAHHIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGEAGTGDVSNATTHMRAIGGEIRRLTSMSEDELFVAAKELQAPY 198          
The following BLAST results are available for this feature:
BLAST of CN188576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_DEIRA6.779e-7166.15Pyridoxal biosynthesis lyase pdxS OS=Deinococcus r... [more]
PDXS_CLOBM8.854e-7169.52Pyridoxal biosynthesis lyase pdxS OS=Clostridium b... [more]
PDXS_BACLD8.854e-7168.65Pyridoxal biosynthesis lyase pdxS OS=Bacillus lich... [more]
PDXS_MYCS21.510e-7070.81Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_CLOCE2.576e-7067.38Pyridoxal biosynthesis lyase pdxS OS=Clostridium c... [more]
PDXS_MYCTU3.364e-7070.27Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_MYCTA3.364e-7070.27Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_MYCBT3.364e-7070.27Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_MYCBP3.364e-7070.27Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_MYCBO3.364e-7070.27Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188576 ID=CN188576; Name=CN188576; organism=Citrus sinensis; type=EST; length=677bp
GCGGTTCTCTTCCTTCGCAACACTTTTTCCTTCTCGCTGTCGGCGTAATG
GCAGGTACCGGAGTGGTGGCGGTCTACGGTAATGACGGCGCTATAACGGA
GACTAAAAAATCTCCATTCTCCGTTAAAGTCGGTCTAGCTCAGATGCTTC
GAGGCGGCGTTATAATGGACGTCGTTACTCCCGAGCAAGCGCGAGTCGCG
GAAGAGGCTGGTGCGTGCGCCGTCATGGCTCTTGAGCGCGTCCCCGCCGA
TATCCGCTCGCAAGGCGGCGTGGCTCGCATGTCTGACCCGCAACTTATCA
AGGAAATCAAACAGTCCGTCACCATCCCCGTCATGGCCAAGGCTCGTATT
GGTCACTTCGTCGAAGCTCAAATTCTCGAAGCTATTGGGATCGATTACGT
CGACGAGAGCGAAGTCTTGACTCCCGCCGACGAAGAGAATCACATCAACA
AGCACAACTTTCGTATCCCCTTCGTATGCGGCTGCCGGAACTTGGGGGAA
GCTTTGAGGAGGATTCGCGAAGGCGCGGCGATGATAAGAACGAAGGGCGA
GGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCGGTCTGTGA
TGGGGGATATTAGGGTTCTGAGGAACATGGACGATGACGAGGTGTTCACT
TTCGCAAAGAAGATAGCGGCGCCGTAC
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