CN188576

Overview
NameCN188576
Unique NameCN188576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_LISMO (Pyridoxal biosynthesis lyase pdxS OS=Listeria monocytogenes GN=pdxS PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.364e-70
Identity = 128/193 (66.32%), Postives = 159/193 (82.38%), Query Frame = 3 
Query:   99 ETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            E K     VK G+AQM +GGVIMDVV  EQA++AEEAGA AVMALERVP+DIR+ GGVARM+DP++++E+ ++V+IPVMAKARIGH  EA++LEA+G+DY+DESEVLTPAD+E H+ K +F +PFVCGCR++GEALRRI EGAAM+RTKGE GTGNI+EAVRH+R V G IR +  M DDE+   AK   APY
Sbjct:    2 EKKVGTDRVKRGMAQMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMADPRIVEEVMKAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNGQIRQIAGMTDDELMVAAKNFGAPY 194
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_LISIN (Pyridoxal biosynthesis lyase pdxS OS=Listeria innocua GN=pdxS PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.364e-70
Identity = 128/193 (66.32%), Postives = 159/193 (82.38%), Query Frame = 3 
Query:   99 ETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            E K     VK G+AQM +GGVIMDVV  EQA++AEEAGA AVMALERVP+DIR+ GGVARM+DP++++E+  +V+IPVMAKARIGH  EA++LEA+G+DY+DESEVLTPAD+E H+ K +F +PFVCGCR++GEALRRI EGAAM+RTKGE GTGNI+EAVRH+R V G IR + +M DDE+   AK   APY
Sbjct:    2 EKKVGTDRVKRGMAQMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMADPRIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNGQIRQIASMTDDELMVAAKNFGAPY 194
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_LISMH (Pyridoxal biosynthesis lyase pdxS OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=pdxS PE=3 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.394e-70
Identity = 128/193 (66.32%), Postives = 158/193 (81.87%), Query Frame = 3 
Query:   99 ETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            E K     VK G+AQM +GGVIMDVV  EQA++AEEAGA AVMALERVP+DIR+ GGVARM+DP++++E+  +V+IPVMAKARIGH  EA++LEA+G+DY+DESEVLTPAD+E H+ K +F +PFVCGCR++GEALRRI EGAAM+RTKGE GTGNI+EAVRH+R V G IR +  M DDE+   AK   APY
Sbjct:    2 EKKVGTDRVKRGMAQMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMADPRIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNGQIRQIAGMTDDELMVAAKNFGAPY 194
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_LISMF (Pyridoxal biosynthesis lyase pdxS OS=Listeria monocytogenes serotype 4b (strain F2365) GN=pdxS PE=3 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.394e-70
Identity = 128/193 (66.32%), Postives = 158/193 (81.87%), Query Frame = 3 
Query:   99 ETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            E K     VK G+AQM +GGVIMDVV  EQA++AEEAGA AVMALERVP+DIR+ GGVARM+DP++++E+  +V+IPVMAKARIGH  EA++LEA+G+DY+DESEVLTPAD+E H+ K +F +PFVCGCR++GEALRRI EGAAM+RTKGE GTGNI+EAVRH+R V G IR +  M DDE+   AK   APY
Sbjct:    2 EKKVGTDRVKRGMAQMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMADPRIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNGQIRQIAGMTDDELMVAAKNFGAPY 194
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_LISMC (Pyridoxal biosynthesis lyase pdxS OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=pdxS PE=3 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.394e-70
Identity = 128/193 (66.32%), Postives = 158/193 (81.87%), Query Frame = 3 
Query:   99 ETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            E K     VK G+AQM +GGVIMDVV  EQA++AEEAGA AVMALERVP+DIR+ GGVARM+DP++++E+  +V+IPVMAKARIGH  EA++LEA+G+DY+DESEVLTPAD+E H+ K +F +PFVCGCR++GEALRRI EGAAM+RTKGE GTGNI+EAVRH+R V G IR +  M DDE+   AK   APY
Sbjct:    2 EKKVGTDRVKRGMAQMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMADPRIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNGQIRQIAGMTDDELMVAAKNFGAPY 194
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_BACA2 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus amyloliquefaciens (strain FZB42) GN=pdxS PE=3 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.394e-70
Identity = 126/185 (68.11%), Postives = 157/185 (84.86%), Query Frame = 3 
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+M +GGVIMDVV  EQA++AEEAGA AVMALERVPADIR+ GGVARM+DP +++E+  +V+IPVMAKARIGH VEA++LEA+G+DY+DESEVLTPADEE H+NK+ + +PFVCGCR+LGEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V   +R +  M DDE+ T AK + APY
Sbjct:    9 VKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSDDELMTEAKNLGAPY 193
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDX12_ARATH (Probable pyridoxal biosynthesis protein PDX1.2 OS=Arabidopsis thaliana GN=PDX12 PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.394e-70
Identity = 130/198 (65.66%), Postives = 169/198 (85.35%), Query Frame = 3 
Query:   90 AITETKKS-PFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGE-AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            AIT+ KK+ PFSVKVGLAQ+LRGG I++V +  QA++AE AGAC+V+    V   +RS+GGV RM DP LIKE+K++V++PVMA+AR+GHFVEAQILE++ +DY+DESE+++ AD+++ INKHNFR PF+CGCR+ GEALRRIREGAAMIR +G+   TGNI E V++VRS+MG++RVL NMDDDEVFTFAKKI+APY
Sbjct:   21 AITDAKKNHPFSVKVGLAQVLRGGAIVEVSSVNQAKLAESAGACSVI----VSDPVRSRGGVRRMPDPVLIKEVKRAVSVPVMARARVGHFVEAQILESLAVDYIDESEIISVADDDHFINKHNFRSPFICGCRDTGEALRRIREGAAMIRIQGDLTATGNIAETVKNVRSLMGEVRVLNNMDDDEVFTFAKKISAPY 214
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_STAES (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdxS PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 5.739e-70
Identity = 125/185 (67.57%), Postives = 157/185 (84.86%), Query Frame = 3 
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+M +GGVIMDVV  EQA++AEEAGA AVMALERVP+DIR+ GGVARM++P++++E+  +V+IPVMAKARIGH  EA++LE++G+DY+DESEVLTPADEE H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ TFAK + APY
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLESMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRRVNSEVSRLTVMNDDEIMTFAKDLGAPY 194
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_STAEQ (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdxS PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 5.739e-70
Identity = 125/185 (67.57%), Postives = 157/185 (84.86%), Query Frame = 3 
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+M +GGVIMDVV  EQA++AEEAGA AVMALERVP+DIR+ GGVARM++P++++E+  +V+IPVMAKARIGH  EA++LE++G+DY+DESEVLTPADEE H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ TFAK + APY
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLESMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRRVNSEVSRLTVMNDDEIMTFAKDLGAPY 194
[Close]
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_PROAC (Pyridoxal biosynthesis lyase pdxS OS=Propionibacterium acnes GN=pdxS PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 5.739e-70
Identity = 129/185 (69.73%), Postives = 160/185 (86.49%), Query Frame = 3 
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK GLA ML+GGVIMDVVTPEQA++AE+AGACAVMALERVPADIR+QGGVARMSDP LI+ I ++V+IPVMAKARIGHFVEAQ+LE++ +D++DESEVL+PAD  NHI+K  F +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++ EAVRH+R++  ++  L +M  DE++  AK++ APY
Sbjct:   19 VKRGLADMLKGGVIMDVVTPEQAKIAEDAGACAVMALERVPADIRAQGGVARMSDPDLIEGIIEAVSIPVMAKARIGHFVEAQVLESLRVDFIDESEVLSPADYANHIDKWAFGVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSEAVRHLRTIRAEMARLSSMSPDELYVAAKELQAPY 203
The following BLAST results are available for this feature:
BLAST of CN188576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_LISMO3.364e-7066.32Pyridoxal biosynthesis lyase pdxS OS=Listeria mono... [more]
PDXS_LISIN3.364e-7066.32Pyridoxal biosynthesis lyase pdxS OS=Listeria inno... [more]
PDXS_LISMH4.394e-7066.32Pyridoxal biosynthesis lyase pdxS OS=Listeria mono... [more]
PDXS_LISMF4.394e-7066.32Pyridoxal biosynthesis lyase pdxS OS=Listeria mono... [more]
PDXS_LISMC4.394e-7066.32Pyridoxal biosynthesis lyase pdxS OS=Listeria mono... [more]
PDXS_BACA24.394e-7068.11Pyridoxal biosynthesis lyase pdxS OS=Bacillus amyl... [more]
PDX12_ARATH4.394e-7065.66Probable pyridoxal biosynthesis protein PDX1.2 OS=... [more]
PDXS_STAES5.739e-7067.57Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAEQ5.739e-7067.57Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_PROAC5.739e-7069.73Pyridoxal biosynthesis lyase pdxS OS=Propionibacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188576 ID=CN188576; Name=CN188576; organism=Citrus sinensis; type=EST; length=677bp
GCGGTTCTCTTCCTTCGCAACACTTTTTCCTTCTCGCTGTCGGCGTAATG
GCAGGTACCGGAGTGGTGGCGGTCTACGGTAATGACGGCGCTATAACGGA
GACTAAAAAATCTCCATTCTCCGTTAAAGTCGGTCTAGCTCAGATGCTTC
GAGGCGGCGTTATAATGGACGTCGTTACTCCCGAGCAAGCGCGAGTCGCG
GAAGAGGCTGGTGCGTGCGCCGTCATGGCTCTTGAGCGCGTCCCCGCCGA
TATCCGCTCGCAAGGCGGCGTGGCTCGCATGTCTGACCCGCAACTTATCA
AGGAAATCAAACAGTCCGTCACCATCCCCGTCATGGCCAAGGCTCGTATT
GGTCACTTCGTCGAAGCTCAAATTCTCGAAGCTATTGGGATCGATTACGT
CGACGAGAGCGAAGTCTTGACTCCCGCCGACGAAGAGAATCACATCAACA
AGCACAACTTTCGTATCCCCTTCGTATGCGGCTGCCGGAACTTGGGGGAA
GCTTTGAGGAGGATTCGCGAAGGCGCGGCGATGATAAGAACGAAGGGCGA
GGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCGGTCTGTGA
TGGGGGATATTAGGGTTCTGAGGAACATGGACGATGACGAGGTGTTCACT
TTCGCAAAGAAGATAGCGGCGCCGTAC
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