CN188576

Overview
NameCN188576
Unique NameCN188576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_BACCN (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=pdxS PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 5.739e-70
Identity = 123/185 (66.49%), Postives = 158/185 (85.41%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+M +GGVIMDVV  EQA++AEEAGA AVMALERVPADIR+ GGVARM+DP +++E+  +V+IPVMAK RIGH VEA++LE++G+DY+DESEVLTPADE NH+NK ++ +PFVCGCR++GEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V  +IR + N+ +DE+ T+AK   APY
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVNHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVANLREDELMTYAKNTGAPY 194          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_CLOBL (Pyridoxal biosynthesis lyase pdxS OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=pdxS PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.278e-69
Identity = 128/187 (68.45%), Postives = 159/187 (85.03%), Query Frame = 3
Query:  117 FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            + +   LAQM++ GVIMDVV PEQA++AEEAGA AVMALERVP+DIR QGGVAR SDP++IKEI  +V+IPVMAK RIGHFVEAQILEAIG+D +DESEVLTPAD+  HINK +F++PFVCG RNLGEALRRI EGA+MIRTKGEAGTGN++EAVRH+R++  ++R L+    +E+ T AK++ AP+
Sbjct:    5 YELNKNLAQMIKNGVIMDVVNPEQAKIAEEAGAIAVMALERVPSDIRKQGGVARTSDPKMIKEIINAVSIPVMAKVRIGHFVEAQILEAIGVDCIDESEVLTPADDLFHINKKDFKVPFVCGARNLGEALRRIGEGASMIRTKGEAGTGNVVEAVRHMRTISSEMRKLQLTPKEELMTVAKEMGAPF 191          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_ANOFW (Pyridoxal biosynthesis lyase pdxS OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.278e-69
Identity = 128/196 (65.31%), Postives = 164/196 (83.67%), Query Frame = 3
Query:   90 AITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            A+T T++    VK G+A+M +GGVIMDVV  EQA++AE AGA AVMALERVPADIR+ GGVARM+DP +I+E+ ++V+IPVMAKARIGH+VEA++LEA+G+DY+DESEVLTPADEE HI+K  F +PFVCGCR+LGEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V   +R + +M +DE+ T AK + AP+
Sbjct:    2 AVTGTER----VKRGMAEMQKGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMKAVSIPVMAKARIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVSMSEDELMTEAKNLGAPF 193          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_STRAW (Pyridoxal biosynthesis lyase pdxS OS=Streptomyces avermitilis GN=pdxS PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.670e-69
Identity = 127/185 (68.65%), Postives = 157/185 (84.86%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+ L+GGVIMDVVTPEQA++AE+AGA AVMALERVPADIR  GGVARMSDP +I+ I  +V+IPVMAK+RIGHFVEAQ+L+++G+DY+DESEVLTPADE NH +K  F  PFVCG  NLGEALRRI EGAAMIR+KGEAGTGN++EAVRH+R +  +I  LR  D++E++  AK++ APY
Sbjct:   19 VKRGMAEQLKGGVIMDVVTPEQAKIAEDAGAVAVMALERVPADIRKDGGVARMSDPDMIEGIISAVSIPVMAKSRIGHFVEAQVLQSLGVDYIDESEVLTPADEVNHSDKWAFTTPFVCGATNLGEALRRIAEGAAMIRSKGEAGTGNVVEAVRHLRQIKNEIARLRGYDNNELYAAAKELRAPY 203          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_LISW6 (Pyridoxal biosynthesis lyase pdxS OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=pdxS PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.670e-69
Identity = 127/193 (65.80%), Postives = 158/193 (81.87%), Query Frame = 3
Query:   99 ETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            E K     VK G+AQM +GGVIMDVV  EQA++AE+AGA AVMALERVP+DIR+ GGVARM+DP++++E+  +V+IPVMAKARIGH  EA++LEA+G+DY+DESEVLTPAD+E H+ K +F +PFVCGCR++GEALRRI EGAAM+RTKGE GTGNI+EAVRH+R V G IR +  M DDE+   AK   APY
Sbjct:    2 EKKVGTDRVKRGMAQMQKGGVIMDVVNAEQAKIAEDAGAVAVMALERVPSDIRAAGGVARMADPRIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNGQIRQIVGMTDDELMVAAKNFGAPY 194          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_BACSU (Pyridoxal biosynthesis lyase pdxS OS=Bacillus subtilis GN=pdxS PE=1 SV=3)

HSP 1 Score: 262.307 bits (669), Expect = 1.670e-69
Identity = 124/185 (67.03%), Postives = 157/185 (84.86%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+M +GGVIMDV+  EQA++AEEAGA AVMALERVPADIR+ GGVARM+DP +++E+  +V+IPVMAKARIGH VEA++LEA+G+DY+DESEVLTPADEE H+NK+ + +PFVCGCR+LGEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V   +R +  M +DE+ T AK + APY
Sbjct:    9 VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPY 193          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_STRCO (Pyridoxal biosynthesis lyase pdxS OS=Streptomyces coelicolor GN=pdxS PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.181e-69
Identity = 127/185 (68.65%), Postives = 157/185 (84.86%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+ L+GGVIMDVVTPEQA++AE+AGA AVMALERVPADIR  GGVARMSDP +I+ I  +V+IPVMAK+RIGHFVEAQ+L+++G+DY+DESEVLTPADE NH +K  F  PFVCG  NLGEALRRI EGAAMIR+KGEAGTGN++EAVRH+R +  +I  LR  D++E++  AK++ APY
Sbjct:   18 VKRGMAEQLKGGVIMDVVTPEQAKIAEDAGAVAVMALERVPADIRKDGGVARMSDPDMIEGIIGAVSIPVMAKSRIGHFVEAQVLQSLGVDYIDESEVLTPADEVNHSDKFAFTTPFVCGATNLGEALRRIAEGAAMIRSKGEAGTGNVVEAVRHLRQIKNEIARLRGYDNNELYAAAKELRAPY 202          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_STAHJ (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus haemolyticus (strain JCSC1435) GN=pdxS PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.181e-69
Identity = 124/185 (67.03%), Postives = 157/185 (84.86%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+M +GGVIMDVV  EQA++AEEAGA AVMALERVP+DIR+ GGVAR ++P++++E+  +V+IPVMAKARIGH  EA++LEA+G+DY+DESEVLTPADEE H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ T+AK++ APY
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARSANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRKVNSEVSRLVVMNDDEIMTYAKELGAPY 194          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_LEIXX (Pyridoxal biosynthesis lyase pdxS OS=Leifsonia xyli subsp. xyli GN=pdxS PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.181e-69
Identity = 129/185 (69.73%), Postives = 156/185 (84.32%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK GLA+ML+GGVIMDVVTPEQAR+AE+AGA AVMALERVPADIR+QGGVARMSDP LI+ I   V IPVMAKARIGHFVEAQ+L+A+ +DY+DESEVL+PAD  NHI+K +F +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++ EA +H+R +  +I+ L  M  DE++  AK++ APY
Sbjct:   14 VKRGLAEMLKGGVIMDVVTPEQARIAEDAGAVAVMALERVPADIRAQGGVARMSDPDLIEAIIAEVRIPVMAKARIGHFVEAQVLQALDVDYIDESEVLSPADYVNHIDKWDFTVPFVCGATNLGEALRRIIEGAAMIRSKGEAGTGDVSEATKHIRKITAEIKALTAMSRDELYVAAKELQAPY 198          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_SALAI (Pyridoxal biosynthesis lyase pdxS OS=Salinispora arenicola (strain CNS-205) GN=pdxS PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.848e-69
Identity = 128/185 (69.19%), Postives = 158/185 (85.41%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+ML+GGVIMDVVTPEQAR+AE+AGA AVMALERVPADIR+QGGV+RMSDP +I  I Q+V+IPVMAKARIGHFVEAQIL+++G+DYVDESEVLTPAD  NH++K  F +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R +  +IR L+++  DE++  AK++ APY
Sbjct:   21 VKRGMAEMLKGGVIMDVVTPEQARIAEDAGAVAVMALERVPADIRAQGGVSRMSDPDMIDGIMQAVSIPVMAKARIGHFVEAQILQSLGVDYVDESEVLTPADYANHVDKWAFTVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSNATTHMRGIRTEIRRLQSLPADELYVAAKELQAPY 205          
The following BLAST results are available for this feature:
BLAST of CN188576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_BACCN5.739e-7066.49Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]
PDXS_CLOBL1.278e-6968.45Pyridoxal biosynthesis lyase pdxS OS=Clostridium b... [more]
PDXS_ANOFW1.278e-6965.31Pyridoxal biosynthesis lyase pdxS OS=Anoxybacillus... [more]
PDXS_STRAW1.670e-6968.65Pyridoxal biosynthesis lyase pdxS OS=Streptomyces ... [more]
PDXS_LISW61.670e-6965.80Pyridoxal biosynthesis lyase pdxS OS=Listeria wels... [more]
PDXS_BACSU1.670e-6967.03Pyridoxal biosynthesis lyase pdxS OS=Bacillus subt... [more]
PDXS_STRCO2.181e-6968.65Pyridoxal biosynthesis lyase pdxS OS=Streptomyces ... [more]
PDXS_STAHJ2.181e-6967.03Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_LEIXX2.181e-6969.73Pyridoxal biosynthesis lyase pdxS OS=Leifsonia xyl... [more]
PDXS_SALAI2.848e-6969.19Pyridoxal biosynthesis lyase pdxS OS=Salinispora a... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188576 ID=CN188576; Name=CN188576; organism=Citrus sinensis; type=EST; length=677bp
GCGGTTCTCTTCCTTCGCAACACTTTTTCCTTCTCGCTGTCGGCGTAATG
GCAGGTACCGGAGTGGTGGCGGTCTACGGTAATGACGGCGCTATAACGGA
GACTAAAAAATCTCCATTCTCCGTTAAAGTCGGTCTAGCTCAGATGCTTC
GAGGCGGCGTTATAATGGACGTCGTTACTCCCGAGCAAGCGCGAGTCGCG
GAAGAGGCTGGTGCGTGCGCCGTCATGGCTCTTGAGCGCGTCCCCGCCGA
TATCCGCTCGCAAGGCGGCGTGGCTCGCATGTCTGACCCGCAACTTATCA
AGGAAATCAAACAGTCCGTCACCATCCCCGTCATGGCCAAGGCTCGTATT
GGTCACTTCGTCGAAGCTCAAATTCTCGAAGCTATTGGGATCGATTACGT
CGACGAGAGCGAAGTCTTGACTCCCGCCGACGAAGAGAATCACATCAACA
AGCACAACTTTCGTATCCCCTTCGTATGCGGCTGCCGGAACTTGGGGGAA
GCTTTGAGGAGGATTCGCGAAGGCGCGGCGATGATAAGAACGAAGGGCGA
GGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCGGTCTGTGA
TGGGGGATATTAGGGTTCTGAGGAACATGGACGATGACGAGGTGTTCACT
TTCGCAAAGAAGATAGCGGCGCCGTAC
back to top