CN188576

Overview
NameCN188576
Unique NameCN188576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_MYCPA (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium paratuberculosis GN=pdxS PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.848e-69
Identity = 127/185 (68.65%), Postives = 159/185 (85.95%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+ML+GGVIMDVVTPEQA++AE AGA AVMALERVPADIR+QGGV+RMSDP +I+ I  +VTIPVMAKARIGHFVEAQIL+++G+DY+DESEVLTPAD  +HI+K  F +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R++ G+IR L ++ +DE++  AK++ APY
Sbjct:   18 VKRGMAEMLKGGVIMDVVTPEQAKIAEGAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGIISAVTIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTHHIDKWKFTVPFVCGATNLGEALRRINEGAAMIRSKGEAGTGDVSNATTHMRAIGGEIRRLMSLSEDELYVAAKELQAPY 202          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_MYCA1 (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium avium (strain 104) GN=pdxS PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.848e-69
Identity = 127/185 (68.65%), Postives = 159/185 (85.95%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+ML+GGVIMDVVTPEQA++AE AGA AVMALERVPADIR+QGGV+RMSDP +I+ I  +VTIPVMAKARIGHFVEAQIL+++G+DY+DESEVLTPAD  +HI+K  F +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R++ G+IR L ++ +DE++  AK++ APY
Sbjct:   18 VKRGMAEMLKGGVIMDVVTPEQAKIAEGAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGIISAVTIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTHHIDKWKFTVPFVCGATNLGEALRRINEGAAMIRSKGEAGTGDVSNATTHMRAIGGEIRRLMSLSEDELYVAAKELQAPY 202          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_OCEIH (Pyridoxal biosynthesis lyase pdxS OS=Oceanobacillus iheyensis GN=pdxS PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 4.858e-69
Identity = 127/193 (65.80%), Postives = 158/193 (81.87%), Query Frame = 3
Query:   99 ETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            E K     VK G+AQM +GGVIMDVV  EQA++AE+AGA AVMALERVP+DIR+ GGVARM++P L++EI QSV+IPVMAKARIGH VEA++LE++G+DY+DESEVLTPADE  H+NK ++ +PFVCGCR+LGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V   +  + +M  DE+ T AK + APY
Sbjct:    2 ERKLGTDRVKRGMAQMQKGGVIMDVVNSEQAKIAEQAGAVAVMALERVPSDIRAAGGVARMANPSLVEEIIQSVSIPVMAKARIGHIVEARVLESLGVDYIDESEVLTPADEVFHLNKSDYTVPFVCGCRDLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHIREVQAQVNKVVHMSKDELMTEAKNLGAPY 194          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_GEOSW (Pyridoxal biosynthesis lyase pdxS OS=Geobacillus sp. (strain WCH70) GN=pdxS PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 4.858e-69
Identity = 130/195 (66.67%), Postives = 162/195 (83.08%), Query Frame = 3
Query:   90 AITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 674
            AIT T +    VK G+A+M +GGVIMDVV  EQA++AE AGA AVMALERVPADIR+ GGVARM+DP +I+E+ ++V+IPVMAKARIGH+VEA++LEA+G+DY+DESEVLTPADEE HI+K  F +PFVCGCR+LGEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V   IR + +M +DE+ T AK + AP
Sbjct:    2 AITGTDR----VKRGMAEMQKGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMKAVSIPVMAKARIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEASRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVSMSEDELVTEAKNLGAP 192          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_STAS1 (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=pdxS PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.345e-69
Identity = 124/185 (67.03%), Postives = 155/185 (83.78%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+M +GGVIMDVV  EQA++AEEAGA AVMALERVP+DIR+ GGVARM++P++++E+  +V+IPVMAK RIGH  EA++LE++G+DY+DESEVLTPADEE H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ T AK I APY
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKGRIGHITEARVLESMGVDYIDESEVLTPADEEYHLRKDTFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTEAKNIGAPY 194          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_MYCLE (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium leprae GN=pdxS PE=3 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 6.345e-69
Identity = 126/185 (68.11%), Postives = 158/185 (85.41%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+ML+GGVIMDVV PEQAR+AE +GA AVMALERVP+DIR+QGGV+RMSDP +I+ I  +VTIPVMAKARIGHFVEAQIL+++G+DY+DESEVLTPAD  +HI+K  F +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R++ GDIR L ++ +DE++  AK++ APY
Sbjct:   22 VKRGMAEMLKGGVIMDVVIPEQARIAEGSGAVAVMALERVPSDIRAQGGVSRMSDPDMIESIIAAVTIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTHHIDKWKFTVPFVCGATNLGEALRRINEGAAMIRSKGEAGTGDVSNATTHMRAIAGDIRRLTSLSEDELYVAAKELHAPY 206          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_MYCLB (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium leprae (strain Br4923) GN=pdxS PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.345e-69
Identity = 126/185 (68.11%), Postives = 158/185 (85.41%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+ML+GGVIMDVV PEQAR+AE +GA AVMALERVP+DIR+QGGV+RMSDP +I+ I  +VTIPVMAKARIGHFVEAQIL+++G+DY+DESEVLTPAD  +HI+K  F +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R++ GDIR L ++ +DE++  AK++ APY
Sbjct:   22 VKRGMAEMLKGGVIMDVVIPEQARIAEGSGAVAVMALERVPSDIRAQGGVSRMSDPDMIESIIAAVTIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTHHIDKWKFTVPFVCGATNLGEALRRINEGAAMIRSKGEAGTGDVSNATTHMRAIAGDIRRLTSLSEDELYVAAKELHAPY 206          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_BACHD (Pyridoxal biosynthesis lyase pdxS OS=Bacillus halodurans GN=pdxS PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.345e-69
Identity = 126/185 (68.11%), Postives = 154/185 (83.24%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+M +GGVIMDVV  EQA++AEEAGA AVMALERVPADIR+ GGVARM+DP +++E+  +V+IPVMAK RIGH VEA++LEA+G+DY+DESEVLTPADE  H+NK +F +PFVCG R+LGEA RRI EGA+MIRTKGE GTGNI+EAVRH+R +   IR + NM  DE+ T AK I APY
Sbjct:    9 VKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKCRIGHIVEARVLEALGVDYIDESEVLTPADEVYHLNKRDFTVPFVCGARDLGEAARRIGEGASMIRTKGEPGTGNIVEAVRHMRMMQAQIRKVSNMSTDELMTEAKNIGAPY 193          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDXS_BACWK (Pyridoxal biosynthesis lyase pdxS OS=Bacillus weihenstephanensis (strain KBAB4) GN=pdxS PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 8.287e-69
Identity = 122/185 (65.95%), Postives = 157/185 (84.86%), Query Frame = 3
Query:  123 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY 677
            VK G+A+M +GGVIMDVV  EQAR+AEEAGA AVMALERVPADIR+ GGV+RM+DP +++E+  +V+IPVMAK RIGH VEA++LE++G+DY+DESEVLTPADE  H+NK ++ +PFVCGCR++GEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  +IR + ++ +DE+ T+AK   APY
Sbjct:   10 VKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGAAMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPY 194          
BLAST of CN188576 vs. ExPASy Swiss-Prot
Match: PDX1_NEUCR (Probable pyridoxine biosynthesis protein pdx-1 OS=Neurospora crassa GN=pdx-1 PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.082e-68
Identity = 123/172 (71.51%), Postives = 149/172 (86.63%), Query Frame = 3
Query:   96 TETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDI 611
            T T    F+VK GLAQML+GGVIMDV TP +AR+AEEAGACAVMALER+P+DIR+ GGVARMS+P +IKEI+ +VTIPVMAKARIGH  E +ILE +G+DY+DESEVLTPAD+  H+ K  F+ PFVCGCRNLGEALRRI+EGAAMIRTKGEAGTG+++EAV+H+R+V  +I
Sbjct:    6 TTTNGDSFTVKAGLAQMLKGGVIMDVTTPAEARIAEEAGACAVMALERIPSDIRAAGGVARMSNPSMIKEIQAAVTIPVMAKARIGHVTECRILEQLGVDYIDESEVLTPADDTYHVQKDQFKAPFVCGCRNLGEALRRIKEGAAMIRTKGEAGTGDVVEAVKHIRTVNAEI 177          
The following BLAST results are available for this feature:
BLAST of CN188576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDXS_MYCPA2.848e-6968.65Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_MYCA12.848e-6968.65Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_OCEIH4.858e-6965.80Pyridoxal biosynthesis lyase pdxS OS=Oceanobacillu... [more]
PDXS_GEOSW4.858e-6966.67Pyridoxal biosynthesis lyase pdxS OS=Geobacillus s... [more]
PDXS_STAS16.345e-6967.03Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_MYCLE6.345e-6968.11Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_MYCLB6.345e-6968.11Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_BACHD6.345e-6968.11Pyridoxal biosynthesis lyase pdxS OS=Bacillus halo... [more]
PDXS_BACWK8.287e-6965.95Pyridoxal biosynthesis lyase pdxS OS=Bacillus weih... [more]
PDX1_NEUCR1.082e-6871.51Probable pyridoxine biosynthesis protein pdx-1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188576 ID=CN188576; Name=CN188576; organism=Citrus sinensis; type=EST; length=677bp
GCGGTTCTCTTCCTTCGCAACACTTTTTCCTTCTCGCTGTCGGCGTAATG
GCAGGTACCGGAGTGGTGGCGGTCTACGGTAATGACGGCGCTATAACGGA
GACTAAAAAATCTCCATTCTCCGTTAAAGTCGGTCTAGCTCAGATGCTTC
GAGGCGGCGTTATAATGGACGTCGTTACTCCCGAGCAAGCGCGAGTCGCG
GAAGAGGCTGGTGCGTGCGCCGTCATGGCTCTTGAGCGCGTCCCCGCCGA
TATCCGCTCGCAAGGCGGCGTGGCTCGCATGTCTGACCCGCAACTTATCA
AGGAAATCAAACAGTCCGTCACCATCCCCGTCATGGCCAAGGCTCGTATT
GGTCACTTCGTCGAAGCTCAAATTCTCGAAGCTATTGGGATCGATTACGT
CGACGAGAGCGAAGTCTTGACTCCCGCCGACGAAGAGAATCACATCAACA
AGCACAACTTTCGTATCCCCTTCGTATGCGGCTGCCGGAACTTGGGGGAA
GCTTTGAGGAGGATTCGCGAAGGCGCGGCGATGATAAGAACGAAGGGCGA
GGCCGGAACGGGGAATATTATCGAAGCGGTGAGGCACGTGCGGTCTGTGA
TGGGGGATATTAGGGTTCTGAGGAACATGGACGATGACGAGGTGTTCACT
TTCGCAAAGAAGATAGCGGCGCCGTAC
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