CN188575

Overview
NameCN188575
Unique NameCN188575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_BACA2 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus amyloliquefaciens (strain FZB42) GN=pdxS PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.067e-41
Identity = 85/168 (50.60%), Postives = 115/168 (68.45%), Query Frame = -2
Query:  253 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD 756
            H+NK+ + +PFVCGCR+LGEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V   +R +  M DDE+ T AK + APY+L++Q K+ G+LPVV+F           A+MMQLG D            +P K A+AIV A THY+D +++AE+S  LG AM G+ +S+
Sbjct:  115 HLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSDDELMTEAKNLGAPYELLLQIKRDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEATTHYTDYKLIAELSKELGTAMKGIEISN 282          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_CORU7 (Pyridoxal biosynthesis lyase pdxS OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=pdxS PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.394e-41
Identity = 90/179 (50.28%), Postives = 120/179 (67.04%), Query Frame = -2
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV-ERFASR 759
            NHI+K +F  PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  AV H+R++  +I  L NM +DE++  AK++AAPY+LV++  + G+LPV  F           AMMM LG +           G+P +RA AIV+A  +Y DP+V+A+VS GLGEAMVG+N+ +  V  R A R
Sbjct:  126 NHIDKFDFETPFVCGATNLGEALRRINEGAAMIRSKGEAGTGDVSNAVTHMRTIRAEINRLSNMAEDELYVAAKELAAPYELVVEVARNGKLPVTLFTAGGIATPADAAMMMHLGAEGVFVGSGIFKSGNPAQRAAAIVKATQNYQDPKVIADVSRGLGEAMVGINVDELPVSHRLAER 304          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_ANOFW (Pyridoxal biosynthesis lyase pdxS OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.820e-41
Identity = 84/167 (50.30%), Postives = 114/167 (68.26%), Query Frame = -2
Query:  256 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS 756
            HI+K  F +PFVCGCR+LGEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V   +R + +M +DE+ T AK + AP++++++ K+LGRLPVV+F           A+MM LG D            +P K A+AIV A THY D E++A +S GLG AM G+++S
Sbjct:  115 HIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVSMSEDELMTEAKNLGAPFEVLLEIKRLGRLPVVNFAAGGVATPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGLGGAMKGIDIS 281          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_BACLD (Pyridoxal biosynthesis lyase pdxS OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=pdxS PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.378e-41
Identity = 85/168 (50.60%), Postives = 113/168 (67.26%), Query Frame = -2
Query:  253 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD 756
            H+NK+ F +PFVCGCR+LGEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V   +R +  M DDE+ T AK + APY+L+ + K  GRLPVV+F           A+MMQLG D            +P K A+AIV A TH++D +++AE+S  LG AM G+ +S+
Sbjct:  115 HLNKNEFTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVGMSDDELMTEAKNLGAPYELLKEIKAEGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEATTHFTDYKLIAELSKELGTAMKGIEISN 282          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_PROAC (Pyridoxal biosynthesis lyase pdxS OS=Propionibacterium acnes GN=pdxS PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.105e-41
Identity = 87/169 (51.48%), Postives = 114/169 (67.46%), Query Frame = -2
Query:  253 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD 759
            NHI+K  F +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++ EAVRH+R++  ++  L +M  DE++  AK++ APYDLV +  + G LPVV F           A++MQ+G             G+P  RA AIV+A T Y DP+ +AEVS GLGEAMVG+N++D
Sbjct:  124 NHIDKWAFGVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSEAVRHLRTIRAEMARLSSMSPDELYVAAKELQAPYDLVAEVARTGELPVVLFVAGGVATPADAALVMQMGAQGVFVGSGIFKSGNPAARAAAIVKATTAYDDPDTIAEVSRGLGEAMVGINVAD 292          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_STAS1 (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=pdxS PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.056e-41
Identity = 86/172 (50.00%), Postives = 113/172 (65.70%), Query Frame = -2
Query:  241 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 756
            H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ T AK I APY+++   K+ G+LPVV+F           A+MM+LG D            DP K A+AIV+A THY D E++  ++  LG AM GL+++D  +E
Sbjct:  116 HLRKDTFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTEAKNIGAPYEVLKNIKENGKLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGRLAKELGIAMKGLDINDLSLE 287          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_BACHD (Pyridoxal biosynthesis lyase pdxS OS=Bacillus halodurans GN=pdxS PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.056e-41
Identity = 86/167 (51.50%), Postives = 110/167 (65.87%), Query Frame = -2
Query:  256 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS 756
            H+NK +F +PFVCG R+LGEA RRI EGA+MIRTKGE GTGNI+EAVRH+R +   IR + NM  DE+ T AK I APY+L++  K+ G LPVV+F           A+MMQLG D             P K A+AIV A THY D +++A++S GLG AM G+ +S
Sbjct:  115 HLNKRDFTVPFVCGARDLGEAARRIGEGASMIRTKGEPGTGNIVEAVRHMRMMQAQIRKVSNMSTDELMTEAKNIGAPYELLLSIKETGELPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSETPEKFARAIVEATTHYEDYDLIAKLSKGLGTAMKGIEIS 281          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_MYCLE (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium leprae GN=pdxS PE=3 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 5.297e-41
Identity = 87/179 (48.60%), Postives = 118/179 (65.92%), Query Frame = -2
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD-HKVERFASR 759
            +HI+K  F +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R++ GDIR L ++ +DE++  AK++ APY+LV++  +  +LPV  F           AMMMQLG +            DP +RA AIV+A T Y DP+VLA+VS GLGEAM G+++    + +R A R
Sbjct:  127 HHIDKWKFTVPFVCGATNLGEALRRINEGAAMIRSKGEAGTGDVSNATTHMRAIAGDIRRLTSLSEDELYVAAKELHAPYELVIEVARTNKLPVTLFTAGGIATPADAAMMMQLGAEGIFVGSGIFKSSDPAQRAAAIVKATTFYDDPDVLAKVSRGLGEAMAGIDVEQIAQPDRLAQR 305          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_MYCLB (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium leprae (strain Br4923) GN=pdxS PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.297e-41
Identity = 87/179 (48.60%), Postives = 118/179 (65.92%), Query Frame = -2
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD-HKVERFASR 759
            +HI+K  F +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R++ GDIR L ++ +DE++  AK++ APY+LV++  +  +LPV  F           AMMMQLG +            DP +RA AIV+A T Y DP+VLA+VS GLGEAM G+++    + +R A R
Sbjct:  127 HHIDKWKFTVPFVCGATNLGEALRRINEGAAMIRSKGEAGTGDVSNATTHMRAIAGDIRRLTSLSEDELYVAAKELHAPYELVIEVARTNKLPVTLFTAGGIATPADAAMMMQLGAEGIFVGSGIFKSSDPAQRAAAIVKATTFYDDPDVLAKVSRGLGEAMAGIDVEQIAQPDRLAQR 305          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_ACTPJ (Pyridoxal biosynthesis lyase pdxS OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=pdxS PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.297e-41
Identity = 84/172 (48.84%), Postives = 116/172 (67.44%), Query Frame = -2
Query:  241 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 756
            H+ K ++ +PFVCGCR+LGEALRRI EGA+M+RTKGE GTGN++EAVRH+R V   +R + NM  DE+ T AK + AP++L++Q K LG+LPVV+F           A+MM+LG D            +P K A+AIV+A THY D +++A +S  LGE M GL +S+  V+
Sbjct:  116 HLLKSDYTVPFVCGCRDLGEALRRIGEGASMLRTKGEPGTGNVVEAVRHLRKVNAQLRKVINMSHDELMTEAKHLGAPFELLLQIKTLGKLPVVNFAAGGIATPADAALMMELGADGVFVGSGIFKSENPEKFAKAIVQATTHYQDYDLIARLSADLGEPMRGLEISELAVQ 287          
The following BLAST results are available for this feature:
BLAST of CN188575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
PDXS_BACA21.067e-4150.60Pyridoxal biosynthesis lyase pdxS OS=Bacillus amyl... [more]
PDXS_CORU71.394e-4150.28Pyridoxal biosynthesis lyase pdxS OS=Corynebacteri... [more]
PDXS_ANOFW1.820e-4150.30Pyridoxal biosynthesis lyase pdxS OS=Anoxybacillus... [more]
PDXS_BACLD2.378e-4150.60Pyridoxal biosynthesis lyase pdxS OS=Bacillus lich... [more]
PDXS_PROAC3.105e-4151.48Pyridoxal biosynthesis lyase pdxS OS=Propionibacte... [more]
PDXS_STAS14.056e-4150.00Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_BACHD4.056e-4151.50Pyridoxal biosynthesis lyase pdxS OS=Bacillus halo... [more]
PDXS_MYCLE5.297e-4148.60Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_MYCLB5.297e-4148.60Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_ACTPJ5.297e-4148.84Pyridoxal biosynthesis lyase pdxS OS=Actinobacillu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188575 ID=CN188575; Name=CN188575; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTGCGAAAATATTCATATTGGTAAAGAAGACCATTAG
TTTTCAATTGACAAGTTGTGTAAATTGAACTAACACCCAAAGAAAACATT
ACGACAACTACTGCGGTTTGAAGTTTGAATCCCGCTTACTACATAAGATT
TAAAGAAAAAGGAAAAAGCTTACAGATAATGATTAATAAAGGGCTTCGGG
ACCTCATCTCTTTCATTTATTCGGAGCGACTAGCGAACCTCTCAACCTTG
TGGTCACTCAAATTAAGACCCACCATGGCCTCGCCCAACCCGCAGCTCAC
CTCCGCCAACACCTCCGGGTCACTGTAATGAGTCACCGCCCGTACAATTG
CCTGGGCCCGCTTCACCGGGTCCCCGCTCTTAAACACGCCCGACCCGACA
AACACTCCGTCGCATCCAAGTTGCATCATCATCGCTGCATCCGCCGGCGT
CGCCACTCCTCCCGCTGCGAAGTGCACCACCGGCAACCGCCCCAGCTGCT
TCGTCTGCATCACCAAGTCGTACGGCGCCGCTATCTTCTTTGCGAAAGTG
AACACCTCGTCATCGTCCATGTTCCTCAGAACCCTAATATCCCCCATCAC
AGACCGCACGTGCCTCACCGCTTCGATAATATTCCCCGTTCCGGCCTCGC
CCTTCGTTCTTATCATCGCCGCGCCTTCGCGAATCCTCCTCAAAGCTTCC
CCCAAGTTCCGGCAGCCGCATACGAAGGGGATACGAAAGTTGTGCTTGTT
GATGTGATTC
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