CN188575

Overview
NameCN188575
Unique NameCN188575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDX1_EMENI (Pyridoxine biosynthesis protein pyroA OS=Emericella nidulans GN=pyroA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.437e-47
Identity = 99/178 (55.62%), Postives = 127/178 (71.35%), Query Frame = -2
Query:  241 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIR----VLRNMDDDE--VFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 756
            H+ KHNF+ PFVCGCRNLGEALRRI EGAAMIRTKGEAGTG+++EAV+H+R+V  +I     +L++  D E  +  +A+++ APY+L+ +  + GRLPVV+F           A+MMQLGCD           GD  KRA+AIV+AVTHY DP+VLAEVS GLGEAMVG+N+S  K E
Sbjct:  119 HVTKHNFKAPFVCGCRNLGEALRRISEGAAMIRTKGEAGTGDVVEAVKHMRTVNAEIARARAILQSSPDPEPELRAYARELEAPYELLREAAEKGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDAKKRAKAIVQAVTHYKDPKVLAEVSQGLGEAMVGINVSHMKDE 296          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_HELMI (Pyridoxal biosynthesis lyase pdxS OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.102e-46
Identity = 95/166 (57.23%), Postives = 118/166 (71.08%), Query Frame = -2
Query:  259 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNL 756
            HINK++F++PFVCG RNLGEALRRI EGAAMIRTKGE GTGN++EAVRH R VM +IR L  +  +E  +FAK+I APY+LV    + GRLPVV+F           A+MMQLG D           GDP++RA+AIV A THY+DP+V+AEVS  LGE MVG+ +
Sbjct:  116 HINKNDFKVPFVCGARNLGEALRRIGEGAAMIRTKGEPGTGNVVEAVRHARQVMSEIRKLTTLPKEERMSFAKEIGAPYELVCLVAETGRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKSGDPIRRAKAIVAATTHYNDPKVIAEVSKDLGEPMVGIEI 281          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_DEHSC (Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoides sp. (strain CBDB1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.439e-46
Identity = 92/177 (51.98%), Postives = 126/177 (71.19%), Query Frame = -2
Query:  226 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 756
            H+ KH+F++PFVCGCR+LGEALRRI EGAAMIRTKGEAGTGNI+EAVRH+RSVMG +R +++M  DE+  +AK+I AP +LV++  + G+LPVV+F           A+MMQLG D            +P   A+A+V+AVTHY D ++LAE+S GLG+AM GL++     ++  S+
Sbjct:  114 HVWKHDFKVPFVCGCRDLGEALRRIGEGAAMIRTKGEAGTGNIVEAVRHMRSVMGSVRRVQSMSPDELSAYAKEINAPLELVLELHKTGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPSAMAKAVVKAVTHYKDAQILAEISKGLGDAMPGLDIKQIDPDKLISQ 290          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_DEHSB (Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoides sp. (strain BAV1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.439e-46
Identity = 92/177 (51.98%), Postives = 126/177 (71.19%), Query Frame = -2
Query:  226 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 756
            H+ KH+F++PFVCGCR+LGEALRRI EGAAMIRTKGEAGTGNI+EAVRH+RSVMG +R +++M  DE+  +AK+I AP +LV++  + G+LPVV+F           A+MMQLG D            +P   A+A+V+AVTHY D ++LAE+S GLG+AM GL++     ++  S+
Sbjct:  114 HVWKHDFKVPFVCGCRDLGEALRRIGEGAAMIRTKGEAGTGNIVEAVRHMRSVMGSVRRVQSMSPDELSAYAKEINAPLELVLELHKTGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPSAMAKAVVKAVTHYKDAQILAEISKGLGDAMPGLDIKQIDPDKLISQ 290          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_DICT6 (Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=pdxS PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.142e-46
Identity = 94/166 (56.63%), Postives = 119/166 (71.69%), Query Frame = -2
Query:  259 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNL 756
            HINKH F++PFVCG R+LGEALRRI EGAAMIRTKGEAGTGN++EAVRH+R +M +IR L  + D+E+   AK++ AP +LV++TK+LGRLPVV+F           A+MM LG D            DP KRA+AIV AVT+Y DP VLAE+S  LGE M G+++
Sbjct:  116 HINKHLFKVPFVCGARDLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQIMDEIRALALLPDEELVAKAKELGAPLELVIETKKLGRLPVVNFAAGGIATPADAALMMHLGADGVFVGSGIFKSKDPRKRARAIVLAVTYYDDPYVLAEISEDLGEPMPGIDV 281          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_DICTD (Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=pdxS PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.714e-45
Identity = 93/166 (56.02%), Postives = 119/166 (71.69%), Query Frame = -2
Query:  259 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNL 756
            HINKH F++PFVCG R+LGEALRRI EGAAMIRTKGEAGTGN++EAVRH+R +M +IR L  + D+E+   AK++ AP DL+++TK+LGRLPVV+F           A+MM LG D            +P KRA+AIV AVT+Y DP VLAE+S  LGE M G+++
Sbjct:  116 HINKHAFKVPFVCGARDLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQIMDEIRSLVLLPDEELVAKAKELGAPLDLIIETKKLGRLPVVNFAAGGIATPADAALMMHLGADGVFVGSGIFKSKNPRKRARAIVLAVTYYDDPYVLAEISEDLGEPMPGIDV 281          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDX1_SUBDO (Probable pyridoxine biosynthesis SNZERR OS=Suberites domuncula GN=SNZERR PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.714e-45
Identity = 93/178 (52.25%), Postives = 126/178 (70.79%), Query Frame = -2
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 759
            NH++K  F +PFVCG R+LGEALRRI EGAAMIRTKGEAGTGN++EAVRH R +  +IRV + +   E++ +AK++  P DL+ +T +LGRLPVV+F           +++MQLG D           G+P KRA+A+V+AVTHY+DP+VLA+VS  LG+ MVGLN  +H  E++A R
Sbjct:  124 NHVDKQPFNVPFVCGARSLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHARQINREIRVAQCLSSAELYGYAKQLGVPLDLLQKTAKLGRLPVVNFAAGGLATPADVSLLMQLGVDGVFVGSGIFKSGNPEKRAKAMVQAVTHYNDPKVLADVSEDLGDPMVGLN-CEHLSEKWAQR 300          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_CLOCE (Pyridoxal biosynthesis lyase pdxS OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=pdxS PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.897e-45
Identity = 86/168 (51.19%), Postives = 119/168 (70.83%), Query Frame = -2
Query:  253 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD 756
            HI+KH F++PFVCG +NLGEALRRI EGA+MIRTKGEAGTGN++EAVRH+R+V  +IR +++    E+ T AK+  APYDL++   + G+LPV++F           A+MMQLGCD            DP KRA+AIV+A T+Y+DP+++AEVS  LG AM  +++ +
Sbjct:  113 HIDKHTFKVPFVCGAKNLGEALRRISEGASMIRTKGEAGTGNVVEAVRHMRTVTNEIRKVQSASKQELMTIAKEFGAPYDLILYVHENGKLPVINFAAGGIATPADAALMMQLGCDGVFVGSGIFKSSDPAKRAKAIVKATTYYNDPQIIAEVSEELGTAMDSIDVRE 280          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDX1_CERNC (Pyridoxine biosynthesis protein PDX1 OS=Cercospora nicotianae GN=PDX1 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.759e-44
Identity = 91/166 (54.82%), Postives = 118/166 (71.08%), Query Frame = -2
Query:  262 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLN 759
            NHI+K  + +PFVCGC+NLGEALRRI EGAAMIRTKGEAGTG+++EAVRH+++V  +I    +  D ++   A+++   Y+L+ QT QL RLPVV+F           A+MMQ+GCD           GD  KRA+AIV+A THY+DP+VLAEVS GLGEAMVG+N
Sbjct:  163 NHIDKSVYNVPFVCGCKNLGEALRRISEGAAMIRTKGEAGTGDVVEAVRHMQTVNAEIAKASSASDADLRMMARELQCDYNLLKQTAQLKRLPVVNFAAGGIATPADAALMMQMGCDGVFVGSGIFKSGDAAKRAKAIVQATTHYNDPKVLAEVSSGLGEAMVGIN 328          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_DESDA (Pyridoxal biosynthesis lyase pdxS OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=pdxS PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.298e-44
Identity = 93/167 (55.69%), Postives = 117/167 (70.06%), Query Frame = -2
Query:  256 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS 756
            HI+K +F +PFVCGCRNLGEALRRI EGAAMIRTKGE GTGN++EAVRH R VM ++R+L  + + EV  FAK++ AP +L +  ++ GRLPVV+F           AMMM LGCD           GDP KRA+AIV+AVT+Y D  +LAE+S  LGE MVG+ +S
Sbjct:  114 HIDKRDFTVPFVCGCRNLGEALRRIAEGAAMIRTKGEPGTGNVVEAVRHCRQVMDEVRMLCALPEAEVPNFAKEMGAPLELCLLVRKEGRLPVVNFAAGGIATPADAAMMMHLGCDGVFVGSGIFKSGDPAKRARAIVQAVTNYKDFALLAEISRDLGEPMVGIEIS 280          
The following BLAST results are available for this feature:
BLAST of CN188575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
PDX1_EMENI8.437e-4755.62Pyridoxine biosynthesis protein pyroA OS=Emericell... [more]
PDXS_HELMI1.102e-4657.23Pyridoxal biosynthesis lyase pdxS OS=Heliobacteriu... [more]
PDXS_DEHSC1.439e-4651.98Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoid... [more]
PDXS_DEHSB1.439e-4651.98Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoid... [more]
PDXS_DICT67.142e-4656.63Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus ... [more]
PDXS_DICTD2.714e-4556.02Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus ... [more]
PDX1_SUBDO2.714e-4552.25Probable pyridoxine biosynthesis SNZERR OS=Suberit... [more]
PDXS_CLOCE7.897e-4551.19Pyridoxal biosynthesis lyase pdxS OS=Clostridium c... [more]
PDX1_CERNC1.759e-4454.82Pyridoxine biosynthesis protein PDX1 OS=Cercospora... [more]
PDXS_DESDA2.298e-4455.69Pyridoxal biosynthesis lyase pdxS OS=Desulfovibrio... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188575 ID=CN188575; Name=CN188575; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTGCGAAAATATTCATATTGGTAAAGAAGACCATTAG
TTTTCAATTGACAAGTTGTGTAAATTGAACTAACACCCAAAGAAAACATT
ACGACAACTACTGCGGTTTGAAGTTTGAATCCCGCTTACTACATAAGATT
TAAAGAAAAAGGAAAAAGCTTACAGATAATGATTAATAAAGGGCTTCGGG
ACCTCATCTCTTTCATTTATTCGGAGCGACTAGCGAACCTCTCAACCTTG
TGGTCACTCAAATTAAGACCCACCATGGCCTCGCCCAACCCGCAGCTCAC
CTCCGCCAACACCTCCGGGTCACTGTAATGAGTCACCGCCCGTACAATTG
CCTGGGCCCGCTTCACCGGGTCCCCGCTCTTAAACACGCCCGACCCGACA
AACACTCCGTCGCATCCAAGTTGCATCATCATCGCTGCATCCGCCGGCGT
CGCCACTCCTCCCGCTGCGAAGTGCACCACCGGCAACCGCCCCAGCTGCT
TCGTCTGCATCACCAAGTCGTACGGCGCCGCTATCTTCTTTGCGAAAGTG
AACACCTCGTCATCGTCCATGTTCCTCAGAACCCTAATATCCCCCATCAC
AGACCGCACGTGCCTCACCGCTTCGATAATATTCCCCGTTCCGGCCTCGC
CCTTCGTTCTTATCATCGCCGCGCCTTCGCGAATCCTCCTCAAAGCTTCC
CCCAAGTTCCGGCAGCCGCATACGAAGGGGATACGAAAGTTGTGCTTGTT
GATGTGATTC
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