CN188575

Overview
NameCN188575
Unique NameCN188575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_SULIA (Pyridoxal biosynthesis lyase pdxS OS=Sulfolobus islandicus (strain M.16.27) GN=pdxS PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.221e-30
Identity = 73/175 (41.71%), Postives = 105/175 (60.00%), Query Frame = -2
Query:  241 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGE--AMVGLNLSDHKVE 759
            +HINK  F +PFV G RNLGEALRR  EGA+MIRTKGEAGTGN+ EAV+H++ +  +IR L +M +++    A++   PY LV  T ++ RLP+V+F           A+MM LG D            DP +RA+A+V A   +  PE++ E    + E  +M+G+++   K E
Sbjct:  156 HHINKWEFSVPFVNGARNLGEALRRTAEGASMIRTKGEAGTGNVSEAVKHMKIINSEIRSLISMSEEDRVKKAREYQVPYQLVELTAKIKRLPIVNFAAGGIATPADAALMMWLGADGLFVGSGIFKSQDPDERAKAVVLAAACWEYPEIVLEAQKMISEQKSMMGIDIKSLKPE 330          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_SULSO (Pyridoxal biosynthesis lyase pdxS OS=Sulfolobus solfataricus GN=pdxS PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.494e-30
Identity = 72/175 (41.14%), Postives = 105/175 (60.00%), Query Frame = -2
Query:  241 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGE--AMVGLNLSDHKVE 759
            +HINK  F +PFV G RNLGEALRR  EGA+MIRTKGEAGTGN+ EAV+H++ +  +IR L +M +++    A++   PY +V  T ++ RLP+V+F           A+MM LG D            DP +RA+A+V A   +  PE++ E    + E  +M+G+++   K E
Sbjct:  156 HHINKWEFSVPFVNGARNLGEALRRTSEGASMIRTKGEAGTGNVSEAVKHMKIINSEIRSLISMSEEDRVKKAREYQVPYQIVELTAKIKRLPIVNFAAGGIATPADAALMMWLGADGLFVGSGIFKSQDPDERAKAVVLAAACWEYPEIVLEAQKMISEQKSMMGIDIKSLKPE 330          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_SULIN (Pyridoxal biosynthesis lyase pdxS OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pdxS PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.494e-30
Identity = 73/175 (41.71%), Postives = 105/175 (60.00%), Query Frame = -2
Query:  241 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGE--AMVGLNLSDHKVE 759
            +HINK  F +PFV G RNLGEALRR  EGA+MIRTKGEAGTGN+ EAV+H++ +  +IR L +M +++    A++   PY LV  T ++ RLP+V+F           A+MM LG D            DP +RA+A+V A   +  PE++ E    + E  +M+G+++   K E
Sbjct:  156 HHINKWEFSVPFVNGARNLGEALRRTVEGASMIRTKGEAGTGNVSEAVKHMKIINSEIRSLISMSEEDRVKKAREYQVPYQLVELTAKIKRLPIVNFAAGGIATPADAALMMWLGADGLFVGSGIFKSQDPDERAKAVVLAAACWEYPEIVLEAQKMISEQKSMMGIDIKSLKPE 330          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_PYRCJ (Pyridoxal biosynthesis lyase pdxS OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.727e-29
Identity = 74/177 (41.81%), Postives = 104/177 (58.76%), Query Frame = -2
Query:  241 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVF--TFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGE--AMVGLNLSDHKVE 759
            +HINK  F+ PFV G R L EALRRI EGA+MIR+KGEAGTGN+ EAV+H +++ G +R L    DDE +   +A++   P ++V  T  +GR+PV+ F           A MM LG D            DP +RA+AIV A  ++ DPE +AE    + E  +M+G+++   K E
Sbjct:  152 HHINKWLFKTPFVNGARELCEALRRISEGASMIRSKGEAGTGNVAEAVKHFKAIYGAVRDLTAHRDDEEYLRDYARRCQVPLEVVKLTADMGRVPVITFAAGGIATPADAAFMMWLGADGVFVGSGIFKSQDPERRAEAIVLATAYWDDPEAVAEAQKMVSEKASMMGIDIRALKPE 328          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_THEVO (Pyridoxal biosynthesis lyase pdxS OS=Thermoplasma volcanium GN=pdxS PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.651e-29
Identity = 80/203 (39.41%), Postives = 107/203 (52.71%), Query Frame = -2
Query:  259 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY-------------------------------------DLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNL 756
            H+ K    +P V G RNL EA+RRI EGAAM+RTKGEAGTGNIIEAVRH+R V  +I ++R M  DE+ T A+ IA+ Y                                     D++ Q ++L RLPVV+F           A+MM+LG D            DP K A++IV AV +Y D +V+A VS GL + M G+++
Sbjct:  121 HLYKKKLTVPVVSGARNLPEAVRRIFEGAAMVRTKGEAGTGNIIEAVRHIRKVNEEIAIVRRMTQDEIKTAAENIASSYFQLRNEASTDLFGQSGKVLYDDVYYGMSREKIVKGISDILRQIRKLNRLPVVNFAAGGVATPADGALMMELGADGVFVGSGIFKSPDPEKMAKSIVEAVENYKDYDVVARVSEGL-QGMPGIDI 322          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_THEAC (Pyridoxal biosynthesis lyase pdxS OS=Thermoplasma acidophilum GN=pdxS PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.685e-27
Identity = 77/203 (37.93%), Postives = 106/203 (52.22%), Query Frame = -2
Query:  259 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY-------------------------------------DLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNL 756
            H+ K N  +P V G RNL EA+RRI EGAAMIRTKGEAGTGNIIEAVRH+R V  +I VL+ M D+++   A  I+A Y                                      ++ Q +++GRLPVV+F           A+MM+LG D            +P K A++IV AV +Y D +V+ + S GL + M G+++
Sbjct:  121 HLYKKNLTVPVVSGARNLPEAVRRIFEGAAMIRTKGEAGTGNIIEAVRHIRKVNEEISVLKRMSDEQLRAVASNISASYFVLREEASKDLMGVEGKLSYDSAYAGMGRSRIEREILAILRQIRRMGRLPVVNFAAGGVATPADGALMMELGADGVFVGSGIFKSPNPEKMARSIVEAVENYRDYDVVEKASEGL-QGMPGVDI 322          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_PICTO (Pyridoxal biosynthesis lyase pdxS OS=Picrophilus torridus GN=pdxS PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.822e-26
Identity = 77/214 (35.98%), Postives = 107/214 (50.00%), Query Frame = -2
Query:  226 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDL-------------------------------------VMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 756
            HINK  +++P VCG R   EA+RRI EGAAMIRTKGEAGTGNIIEA+RH+R V   I VL  +++ ++   A+ IA+ Y +                                     + + K+  RLPVV+F           A+MM++G D            DP + A AIV A  +Y D + +A+VS GL + M GL + +  +ER   R
Sbjct:  124 HINKKIYKVPVVCGARTFPEAVRRIFEGAAMIRTKGEAGTGNIIEAMRHIRKVNDGINVLLRLNESDMKKVAENIASSYFILRKETSKELFGYDNFPDMDDLYYGMDSDKIINGILKTLKEIKKYRRLPVVNFAAGGVATPSDAALMMKMGLDGVFVGSGIFKSKDPARMASAIVEAAENYEDYKTIADVSSGL-QGMEGLEIDN--IERLQER 334          
The following BLAST results are available for this feature:
BLAST of CN188575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
PDXS_SULIA3.221e-3041.71Pyridoxal biosynthesis lyase pdxS OS=Sulfolobus is... [more]
PDXS_SULSO5.494e-3041.14Pyridoxal biosynthesis lyase pdxS OS=Sulfolobus so... [more]
PDXS_SULIN5.494e-3041.71Pyridoxal biosynthesis lyase pdxS OS=Sulfolobus is... [more]
PDXS_PYRCJ2.727e-2941.81Pyridoxal biosynthesis lyase pdxS OS=Pyrobaculum c... [more]
PDXS_THEVO4.651e-2939.41Pyridoxal biosynthesis lyase pdxS OS=Thermoplasma ... [more]
PDXS_THEAC5.685e-2737.93Pyridoxal biosynthesis lyase pdxS OS=Thermoplasma ... [more]
PDXS_PICTO2.822e-2635.98Pyridoxal biosynthesis lyase pdxS OS=Picrophilus t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188575 ID=CN188575; Name=CN188575; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTGCGAAAATATTCATATTGGTAAAGAAGACCATTAG
TTTTCAATTGACAAGTTGTGTAAATTGAACTAACACCCAAAGAAAACATT
ACGACAACTACTGCGGTTTGAAGTTTGAATCCCGCTTACTACATAAGATT
TAAAGAAAAAGGAAAAAGCTTACAGATAATGATTAATAAAGGGCTTCGGG
ACCTCATCTCTTTCATTTATTCGGAGCGACTAGCGAACCTCTCAACCTTG
TGGTCACTCAAATTAAGACCCACCATGGCCTCGCCCAACCCGCAGCTCAC
CTCCGCCAACACCTCCGGGTCACTGTAATGAGTCACCGCCCGTACAATTG
CCTGGGCCCGCTTCACCGGGTCCCCGCTCTTAAACACGCCCGACCCGACA
AACACTCCGTCGCATCCAAGTTGCATCATCATCGCTGCATCCGCCGGCGT
CGCCACTCCTCCCGCTGCGAAGTGCACCACCGGCAACCGCCCCAGCTGCT
TCGTCTGCATCACCAAGTCGTACGGCGCCGCTATCTTCTTTGCGAAAGTG
AACACCTCGTCATCGTCCATGTTCCTCAGAACCCTAATATCCCCCATCAC
AGACCGCACGTGCCTCACCGCTTCGATAATATTCCCCGTTCCGGCCTCGC
CCTTCGTTCTTATCATCGCCGCGCCTTCGCGAATCCTCCTCAAAGCTTCC
CCCAAGTTCCGGCAGCCGCATACGAAGGGGATACGAAAGTTGTGCTTGTT
GATGTGATTC
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