CN188575

Overview
NameCN188575
Unique NameCN188575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_DEIRA (Pyridoxal biosynthesis lyase pdxS OS=Deinococcus radiodurans GN=pdxS PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.298e-44
Identity = 93/178 (52.25%), Postives = 122/178 (68.54%), Query Frame = -2
Query:  226 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE-RFASR 756
            HI K +F++PFVCG +NLGEALRR+ EGA+MIRTKGEAGTGN++EAVRH R+V+GDIR +++   +E+ T A+ + APYDLV      G+LPVV+F           A+MMQLG D            +P +RAQAIVRAVTH+ +P++LAEVS  LG  M G+N+ +   E R ASR
Sbjct:  128 HILKRDFKVPFVCGAKNLGEALRRVGEGASMIRTKGEAGTGNVVEAVRHARAVLGDIRAVQSRPAEELMTVARDLQAPYDLVQYVHAHGQLPVVNFAAGGVATPADAALMMQLGLDGVFVGSGIFKSANPERRAQAIVRAVTHFQNPDILAEVSEDLGAPMTGINIDELIPEARLASR 305          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDX1_STELP (Probable pyridoxal biosynthesis protein PDX1 (Fragment) OS=Stellaria longipes PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.298e-44
Identity = 98/169 (57.99%), Postives = 115/169 (68.05%), Query Frame = -2
Query:  265 NHINKHNFRIPFVCGCR----NLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGL 759
            +HINKHNF+IPFVCG          A RR   G        +  TGN++EAVRH+RSVMG+IR+LRNMDDDEVF +AKKI+A YDLVMQTKQLGRLPVV+F           A+MMQLGCD           GDP KRA+AIV+AVTHYSDP++L     GLGEAMVG+
Sbjct:   49 HHINKHNFQIPFVCGLSIPRGAPPPAYRRGYAGHDTGPRVRKPSTGNVVEAVRHIRSVMGEIRLLRNMDDDEVFAYAKKISAAYDLVMQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPAKRARAIVQAVTHYSDPDLLGRGEFGLGEAMVGI 217          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_FRAP2 (Pyridoxal biosynthesis lyase pdxS OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=pdxS PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.001e-44
Identity = 94/178 (52.81%), Postives = 117/178 (65.73%), Query Frame = -2
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 759
            NHI K NF++PFVCGC NLGEALRRI EGAA+IRTKGEAGTGNI+EAVR +R V  DI  ++  D  E+   AK + APYDLV    + G+LPV +F           A+MMQLG +            DP+KRA+AIV AVT+Y+DP++LAEVS  LGE M G+N      E+F+ R
Sbjct:  111 NHIAKDNFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKGADQSELMAIAKNMQAPYDLVKYVHKNGKLPVPNFSAGGVATPADAALMMQLGAESVFVGSGIFKSADPLKRAKAIVSAVTYYNDPKILAEVSEDLGEPMTGINCD---FEKFSQR 285          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_CLONO (Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Clostridium novyi GN=pdxS PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.001e-44
Identity = 95/177 (53.67%), Postives = 118/177 (66.67%), Query Frame = -2
Query:  226 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 756
            HINK  F +PFVCG RNLGEALRRI EGA MIRTKGEAGTGN+IEAVRH+R++   IR L+ M  +E+   AK++ APYDLV   ++ G+LPV++F           A+MMQLGCD            +P KRA+AIV AV +Y++P  +AEVS GLGEAM GL +    V  FA R
Sbjct:   57 HINKKEFNVPFVCGARNLGEALRRIGEGACMIRTKGEAGTGNVIEAVRHMRTIQSQIRKLKVMPKEELMIAAKELGAPYDLVEYVRENGKLPVINFAAGGIATPADAALMMQLGCDGVFVGSGIFKSENPAKRAKAIVEAVKNYNNPLKIAEVSEGLGEAMTGLEIDKLDV-TFAER 232          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_BACCN (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=pdxS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.919e-44
Identity = 86/168 (51.19%), Postives = 118/168 (70.24%), Query Frame = -2
Query:  256 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS 759
            NH+NK ++ +PFVCGCR++GEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V  +IR + N+ +DE+ T+AK   APY+++++ K+LGRLPVV+F           A+MMQLG D            +P K A+AIV A THY D E++A +S GLG+AM G+ +S
Sbjct:  115 NHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVANLREDELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKFARAIVEATTHYEDYELIANLSKGLGDAMKGVEIS 282          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_CORGL (Pyridoxal biosynthesis lyase pdxS OS=Corynebacterium glutamicum GN=pdxS PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 5.118e-44
Identity = 91/169 (53.85%), Postives = 117/169 (69.23%), Query Frame = -2
Query:  253 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD 759
            +HINK  F +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++ EAVRH+R++ GDI  LR++D+DE+F  AK+  APYDLV +    G+LPVV F           A++ Q+G +           G+P  RA AIV+A T + DP V+A+VS GLGEAMVG+N+SD
Sbjct:  137 HHINKWKFDVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSEAVRHLRTIRGDINRLRSLDEDELFVAAKEFQAPYDLVREVASTGKLPVVTFVAGGVATPADAALVRQMGAEGVFVGSGIFKSGNPAARAAAIVKAATLFDDPSVIADVSRGLGEAMVGINVSD 305          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_CORDI (Pyridoxal biosynthesis lyase pdxS OS=Corynebacterium diphtheriae GN=pdxS PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.118e-44
Identity = 90/169 (53.25%), Postives = 118/169 (69.82%), Query Frame = -2
Query:  253 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD 759
            NHI+K NF +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++ EAV+H+R++ G+I  LR+MD+D+++  AK+I APYDLV +    G+LPV  F           A++MQ+G +           G+P  RA AIV+A T Y DP  +AEVS GLGEAMVG+N++D
Sbjct:  117 NHIDKWNFDVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSEAVKHLRTIRGEINRLRSMDEDQLYVAAKEIQAPYDLVREVAATGKLPVTLFVAGGVATPADAALVMQMGAEGVFVGSGIFKSGNPAARAAAIVKATTMYDDPAAIAEVSRGLGEAMVGINVAD 285          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_CLOBM (Pyridoxal biosynthesis lyase pdxS OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=pdxS PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.118e-44
Identity = 91/177 (51.41%), Postives = 123/177 (69.49%), Query Frame = -2
Query:  226 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 756
            HINK +F++PFVCG RNLGEALRRI EGA+MIRTKGEAGTGN++EAVRH+R++  ++R L+    +E+ T AK++ AP++L+    + GRLPV++F           A+MMQLGCD            +P KRA+AIV+A T++ DPEVLA+ S  LG AM+GL +S  + E FA R
Sbjct:  113 HINKKDFKVPFVCGARNLGEALRRIGEGASMIRTKGEAGTGNVVEAVRHMRTISSEMRKLQLTPKEELMTVAKEMGAPFNLIEYVAEKGRLPVINFAAGGIATPADAALMMQLGCDGIFVGSGIFKSDNPEKRAKAIVKATTYFKDPEVLAKASENLGGAMLGLEISKLETE-FAER 288          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_METTH (Pyridoxal biosynthesis lyase pdxS OS=Methanobacterium thermoautotrophicum GN=pdxS PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.685e-44
Identity = 91/168 (54.17%), Postives = 117/168 (69.64%), Query Frame = -2
Query:  253 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD 756
            HI+K  F +PFVCG RNLGEALRRI EGAAMIRTKGE GTGNI+EAVRH+R +M +IR ++N +++E++  ++KI AP +LV +T +LG+LPVV+F           A+MMQLG D            +P   A+AIV A  HY DPEV+AEVS GLG AM GL +S+
Sbjct:  114 HIDKKKFTVPFVCGARNLGEALRRIDEGAAMIRTKGEPGTGNIVEAVRHMRIMMSEIREIQNKEEEELWEVSRKIEAPLELVRETAKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPEGYARAIVEATAHYDDPEVIAEVSRGLGTAMRGLEISE 281          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_THETN (Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerobacter tengcongensis GN=pdxS PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.731e-44
Identity = 89/166 (53.61%), Postives = 116/166 (69.88%), Query Frame = -2
Query:  259 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNL 756
            HINK +F++PFVCG +NLGEALRRI EGA+MIRTKGEAGTGN++EAVRH+R +  +I+ L  + ++E+   AK++ APYDLV    Q G+LPVV+F           A+MMQLG D            +P K A AIV+AVT+Y  PE+LAEVS GLGEAM G+++
Sbjct:  113 HINKWDFKVPFVCGAKNLGEALRRIAEGASMIRTKGEAGTGNVVEAVRHMRMINAEIKRLTTLGEEELMAAAKELQAPYDLVKYVAQHGKLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSQNPEKMAAAIVKAVTYYDKPEILAEVSEGLGEAMTGIDI 278          
The following BLAST results are available for this feature:
BLAST of CN188575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
PDXS_DEIRA2.298e-4452.25Pyridoxal biosynthesis lyase pdxS OS=Deinococcus r... [more]
PDX1_STELP2.298e-4457.99Probable pyridoxal biosynthesis protein PDX1 (Frag... [more]
PDXS_FRAP23.001e-4452.81Pyridoxal biosynthesis lyase pdxS OS=Francisella p... [more]
PDXS_CLONO3.001e-4453.67Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Cl... [more]
PDXS_BACCN3.919e-4451.19Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]
PDXS_CORGL5.118e-4453.85Pyridoxal biosynthesis lyase pdxS OS=Corynebacteri... [more]
PDXS_CORDI5.118e-4453.25Pyridoxal biosynthesis lyase pdxS OS=Corynebacteri... [more]
PDXS_CLOBM5.118e-4451.41Pyridoxal biosynthesis lyase pdxS OS=Clostridium b... [more]
PDXS_METTH6.685e-4454.17Pyridoxal biosynthesis lyase pdxS OS=Methanobacter... [more]
PDXS_THETN8.731e-4453.61Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerob... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188575 ID=CN188575; Name=CN188575; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTGCGAAAATATTCATATTGGTAAAGAAGACCATTAG
TTTTCAATTGACAAGTTGTGTAAATTGAACTAACACCCAAAGAAAACATT
ACGACAACTACTGCGGTTTGAAGTTTGAATCCCGCTTACTACATAAGATT
TAAAGAAAAAGGAAAAAGCTTACAGATAATGATTAATAAAGGGCTTCGGG
ACCTCATCTCTTTCATTTATTCGGAGCGACTAGCGAACCTCTCAACCTTG
TGGTCACTCAAATTAAGACCCACCATGGCCTCGCCCAACCCGCAGCTCAC
CTCCGCCAACACCTCCGGGTCACTGTAATGAGTCACCGCCCGTACAATTG
CCTGGGCCCGCTTCACCGGGTCCCCGCTCTTAAACACGCCCGACCCGACA
AACACTCCGTCGCATCCAAGTTGCATCATCATCGCTGCATCCGCCGGCGT
CGCCACTCCTCCCGCTGCGAAGTGCACCACCGGCAACCGCCCCAGCTGCT
TCGTCTGCATCACCAAGTCGTACGGCGCCGCTATCTTCTTTGCGAAAGTG
AACACCTCGTCATCGTCCATGTTCCTCAGAACCCTAATATCCCCCATCAC
AGACCGCACGTGCCTCACCGCTTCGATAATATTCCCCGTTCCGGCCTCGC
CCTTCGTTCTTATCATCGCCGCGCCTTCGCGAATCCTCCTCAAAGCTTCC
CCCAAGTTCCGGCAGCCGCATACGAAGGGGATACGAAAGTTGTGCTTGTT
GATGTGATTC
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