CN188575

Overview
NameCN188575
Unique NameCN188575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_FRATW (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=pdxS PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.731e-44
Identity = 93/178 (52.25%), Postives = 118/178 (66.29%), Query Frame = -2 
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 759
            NHI+K +F++PFVCGC NLGEALRRI EGAA+IRTKGEAGTGNI+EAVR +R V  DI  ++N D  E+   AK + APYDLV    + G+LPV +F           A+MMQLG +            DP+KRA+AIV AVT+Y+D ++LAEVS  LGE M G+N      E+F+ R
Sbjct:  111 NHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPYDLVTYVHKNGKLPVPNFSAGGVATPADAALMMQLGAESVFVGSGIFKSADPLKRARAIVSAVTYYNDAKILAEVSEDLGEPMTGINCD---FEKFSQR 285
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_FRATT (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. tularensis GN=pdxS PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.731e-44
Identity = 93/178 (52.25%), Postives = 118/178 (66.29%), Query Frame = -2 
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 759
            NHI+K +F++PFVCGC NLGEALRRI EGAA+IRTKGEAGTGNI+EAVR +R V  DI  ++N D  E+   AK + APYDLV    + G+LPV +F           A+MMQLG +            DP+KRA+AIV AVT+Y+D ++LAEVS  LGE M G+N      E+F+ R
Sbjct:  111 NHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPYDLVTYVHKNGKLPVPNFSAGGVATPADAALMMQLGAESVFVGSGIFKSADPLKRARAIVSAVTYYNDAKILAEVSEDLGEPMTGINCD---FEKFSQR 285
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_FRATO (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=pdxS PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.731e-44
Identity = 93/178 (52.25%), Postives = 118/178 (66.29%), Query Frame = -2 
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 759
            NHI+K +F++PFVCGC NLGEALRRI EGAA+IRTKGEAGTGNI+EAVR +R V  DI  ++N D  E+   AK + APYDLV    + G+LPV +F           A+MMQLG +            DP+KRA+AIV AVT+Y+D ++LAEVS  LGE M G+N      E+F+ R
Sbjct:  111 NHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPYDLVTYVHKNGKLPVPNFSAGGVATPADAALMMQLGAESVFVGSGIFKSADPLKRARAIVSAVTYYNDAKILAEVSEDLGEPMTGINCD---FEKFSQR 285
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_FRATN (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. novicida (strain U112) GN=pdxS PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.731e-44
Identity = 93/178 (52.25%), Postives = 118/178 (66.29%), Query Frame = -2 
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 759
            NHI+K +F++PFVCGC NLGEALRRI EGAA+IRTKGEAGTGNI+EAVR +R V  DI  ++N D  E+   AK + APYDLV    + G+LPV +F           A+MMQLG +            DP+KRA+AIV AVT+Y+D ++LAEVS  LGE M G+N      E+F+ R
Sbjct:  111 NHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPYDLVTYVHKNGKLPVPNFSAGGVATPADAALMMQLGAESVFVGSGIFKSADPLKRARAIVSAVTYYNDAKILAEVSEDLGEPMTGINCD---FEKFSQR 285
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_FRATH (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. holarctica (strain LVS) GN=pdxS PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.731e-44
Identity = 93/178 (52.25%), Postives = 118/178 (66.29%), Query Frame = -2 
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 759
            NHI+K +F++PFVCGC NLGEALRRI EGAA+IRTKGEAGTGNI+EAVR +R V  DI  ++N D  E+   AK + APYDLV    + G+LPV +F           A+MMQLG +            DP+KRA+AIV AVT+Y+D ++LAEVS  LGE M G+N      E+F+ R
Sbjct:  111 NHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPYDLVTYVHKNGKLPVPNFSAGGVATPADAALMMQLGAESVFVGSGIFKSADPLKRARAIVSAVTYYNDAKILAEVSEDLGEPMTGINCD---FEKFSQR 285
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_FRATF (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=pdxS PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.731e-44
Identity = 93/178 (52.25%), Postives = 118/178 (66.29%), Query Frame = -2 
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 759
            NHI+K +F++PFVCGC NLGEALRRI EGAA+IRTKGEAGTGNI+EAVR +R V  DI  ++N D  E+   AK + APYDLV    + G+LPV +F           A+MMQLG +            DP+KRA+AIV AVT+Y+D ++LAEVS  LGE M G+N      E+F+ R
Sbjct:  111 NHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPYDLVTYVHKNGKLPVPNFSAGGVATPADAALMMQLGAESVFVGSGIFKSADPLKRARAIVSAVTYYNDAKILAEVSEDLGEPMTGINCD---FEKFSQR 285
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_FRAT1 (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=pdxS PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.731e-44
Identity = 93/178 (52.25%), Postives = 118/178 (66.29%), Query Frame = -2 
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 759
            NHI+K +F++PFVCGC NLGEALRRI EGAA+IRTKGEAGTGNI+EAVR +R V  DI  ++N D  E+   AK + APYDLV    + G+LPV +F           A+MMQLG +            DP+KRA+AIV AVT+Y+D ++LAEVS  LGE M G+N      E+F+ R
Sbjct:  111 NHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPYDLVTYVHKNGKLPVPNFSAGGVATPADAALMMQLGAESVFVGSGIFKSADPLKRARAIVSAVTYYNDAKILAEVSEDLGEPMTGINCD---FEKFSQR 285
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_CLOAB (Pyridoxal biosynthesis lyase pdxS OS=Clostridium acetobutylicum GN=pdxS PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.731e-44
Identity = 93/177 (52.54%), Postives = 121/177 (68.36%), Query Frame = -2 
Query:  226 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 756
            HI+K  F++PFVCG RNLGEALRRI EGA+MIRTKGEAGTGN++EAV+H+R+VM +IR ++N   +E+ T AK++ APYDLV      GRLPVV+F           A+M++LG +            +P KRA+AIV A  +Y DP+VL EVS  LGE M GL +SD K +R+A R
Sbjct:  114 HIDKKAFKVPFVCGARNLGEALRRIGEGASMIRTKGEAGTGNVVEAVKHMRTVMDEIRRVKNAAKEEIMTIAKELGAPYDLVQYVWMNGRLPVVNFAAGGVATPADAALMIRLGAEGVFVGSGIFKSENPEKRARAIVMAAAYYDDPKVLEEVSEDLGEPMYGLEISDIK-DRYAER 289
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_FRATM (Pyridoxal biosynthesis lyase pdxS OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=pdxS PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.489e-43
Identity = 93/178 (52.25%), Postives = 117/178 (65.73%), Query Frame = -2 
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 759
            NHI+K +F++PFVCGC NLGEALRRI EGAA+IRTKGEAGTGNI+EAVR +R V  DI  ++N D  E+   AK + APYDLV    + G+LPV +F           A+MMQLG +            DP KRA+AIV AVT+Y+D ++LAEVS  LGE M G+N      E+F+ R
Sbjct:  111 NHIDKDSFKVPFVCGCTNLGEALRRIGEGAALIRTKGEAGTGNIVEAVRQLRQVNKDINYIKNADKSELMAIAKNLQAPYDLVTYVHKNGKLPVPNFSAGGVATPADAALMMQLGAESVFVGSGIFKSADPFKRARAIVSAVTYYNDAKILAEVSEDLGEPMTGINCD---FEKFSQR 285
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_THEPX (Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerobacter sp. (strain X514) GN=pdxS PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.540e-43
Identity = 96/179 (53.63%), Postives = 122/179 (68.16%), Query Frame = -2 
Query:  226 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS--DHKVERFASR 756
            HI+K  F+IPFVCG RNLGEALRRI EGA+MIRTKGEAGTGN++EAVRH+R +  +I+ L  + +DE+   AK++ APYDLV    Q GRLPVV+F           A+MMQLG D            +P K A+AIV+AVT+Y  PE+LAEVS GLGEAM  +++   D K + +ASR
Sbjct:  113 HIDKWAFKIPFVCGARNLGEALRRIGEGASMIRTKGEAGTGNVVEAVRHMRIINAEIKRLTTLREDELMAAAKELQAPYDLVKYVAQHGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSQNPEKMAEAIVKAVTYYDKPEILAEVSEGLGEAMQSIDIRKLDEK-DLYASR 290
The following BLAST results are available for this feature:
BLAST of CN188575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
PDXS_FRATW8.731e-4452.25Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_FRATT8.731e-4452.25Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_FRATO8.731e-4452.25Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_FRATN8.731e-4452.25Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_FRATH8.731e-4452.25Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_FRATF8.731e-4452.25Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_FRAT18.731e-4452.25Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_CLOAB8.731e-4452.54Pyridoxal biosynthesis lyase pdxS OS=Clostridium a... [more]
PDXS_FRATM1.489e-4352.25Pyridoxal biosynthesis lyase pdxS OS=Francisella t... [more]
PDXS_THEPX2.540e-4353.63Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerob... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188575 ID=CN188575; Name=CN188575; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTGCGAAAATATTCATATTGGTAAAGAAGACCATTAG
TTTTCAATTGACAAGTTGTGTAAATTGAACTAACACCCAAAGAAAACATT
ACGACAACTACTGCGGTTTGAAGTTTGAATCCCGCTTACTACATAAGATT
TAAAGAAAAAGGAAAAAGCTTACAGATAATGATTAATAAAGGGCTTCGGG
ACCTCATCTCTTTCATTTATTCGGAGCGACTAGCGAACCTCTCAACCTTG
TGGTCACTCAAATTAAGACCCACCATGGCCTCGCCCAACCCGCAGCTCAC
CTCCGCCAACACCTCCGGGTCACTGTAATGAGTCACCGCCCGTACAATTG
CCTGGGCCCGCTTCACCGGGTCCCCGCTCTTAAACACGCCCGACCCGACA
AACACTCCGTCGCATCCAAGTTGCATCATCATCGCTGCATCCGCCGGCGT
CGCCACTCCTCCCGCTGCGAAGTGCACCACCGGCAACCGCCCCAGCTGCT
TCGTCTGCATCACCAAGTCGTACGGCGCCGCTATCTTCTTTGCGAAAGTG
AACACCTCGTCATCGTCCATGTTCCTCAGAACCCTAATATCCCCCATCAC
AGACCGCACGTGCCTCACCGCTTCGATAATATTCCCCGTTCCGGCCTCGC
CCTTCGTTCTTATCATCGCCGCGCCTTCGCGAATCCTCCTCAAAGCTTCC
CCCAAGTTCCGGCAGCCGCATACGAAGGGGATACGAAAGTTGTGCTTGTT
GATGTGATTC
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