CN188575

Overview
NameCN188575
Unique NameCN188575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8622 contig Csv1_Contig8622:467..1225. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_CLOBL (Pyridoxal biosynthesis lyase pdxS OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=pdxS PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.540e-43
Identity = 90/177 (50.85%), Postives = 122/177 (68.93%), Query Frame = -2
Query:  226 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 756
            HINK +F++PFVCG RNLGEALRRI EGA+MIRTKGEAGTGN++EAVRH+R++  ++R L+    +E+ T AK++ AP++L+    + G+LPV++F           A+MMQLGCD             P KRA+AIV+A T++ DP+VLA+VS  LG AM GL +S  + E FA R
Sbjct:  113 HINKKDFKVPFVCGARNLGEALRRIGEGASMIRTKGEAGTGNVVEAVRHMRTISSEMRKLQLTPKEELMTVAKEMGAPFNLIEYVAEKGKLPVINFAAGGIATPADAALMMQLGCDGIFVGSGIFKSDSPEKRAKAIVKATTYFKDPDVLAKVSENLGGAMSGLEISKLETE-FAER 288          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_STRCO (Pyridoxal biosynthesis lyase pdxS OS=Streptomyces coelicolor GN=pdxS PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.318e-43
Identity = 92/179 (51.40%), Postives = 119/179 (66.48%), Query Frame = -2
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD-HKVERFASR 759
            NH +K  F  PFVCG  NLGEALRRI EGAAMIR+KGEAGTGN++EAVRH+R +  +I  LR  D++E++  AK++ APY+LV +  +LGRLPVV F           A+M QLG +           GDP KRA AIV+A T Y DP+++A+ S  LGEAMVG+N     + ER+A+R
Sbjct:  123 NHSDKFAFTTPFVCGATNLGEALRRIAEGAAMIRSKGEAGTGNVVEAVRHLRQIKNEIARLRGYDNNELYAAAKELRAPYELVKEVSELGRLPVVLFSAGGVATPADAALMRQLGAEGVFVGSGIFKSGDPAKRAAAIVKATTFYDDPKIIADASRNLGEAMVGINCDTLPETERYANR 301          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_BACWK (Pyridoxal biosynthesis lyase pdxS OS=Bacillus weihenstephanensis (strain KBAB4) GN=pdxS PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.333e-43
Identity = 85/167 (50.90%), Postives = 116/167 (69.46%), Query Frame = -2
Query:  256 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS 756
            H+NK ++ +PFVCGCR++GEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  +IR + ++ +DE+ T+AK   APY+++++ K+LGRLPVV+F           A+MMQLG D            +P K A+AIV A THY D E++A +S GLG AM G+ +S
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGAAMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKFARAIVEATTHYEDYELIASLSKGLGNAMKGIEIS 282          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_BACHK (Pyridoxal biosynthesis lyase pdxS OS=Bacillus thuringiensis subsp. konkukian GN=pdxS PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.659e-43
Identity = 84/167 (50.30%), Postives = 116/167 (69.46%), Query Frame = -2
Query:  256 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS 756
            H+NK ++ +PFVCGCR++GEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V  +IR + ++ +DE+ T+AK   APY+++++ K+LGRLPVV+F           A+MMQLG D            +P K A+AIV A THY D E++A +S GLG AM G+ +S
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPAKFARAIVEATTHYEDYELIASLSKGLGNAMKGIEIS 282          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_BACCZ (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain ZK / E33L) GN=pdxS PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.659e-43
Identity = 84/167 (50.30%), Postives = 116/167 (69.46%), Query Frame = -2
Query:  256 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS 756
            H+NK ++ +PFVCGCR++GEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V  +IR + ++ +DE+ T+AK   APY+++++ K+LGRLPVV+F           A+MMQLG D            +P K A+AIV A THY D E++A +S GLG AM G+ +S
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPAKFARAIVEATTHYEDYELIASLSKGLGNAMKGIEIS 282          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_BACC7 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain AH187) GN=pdxS PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.659e-43
Identity = 84/167 (50.30%), Postives = 116/167 (69.46%), Query Frame = -2
Query:  256 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS 756
            H+NK ++ +PFVCGCR++GEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V  +IR + ++ +DE+ T+AK   APY+++++ K+LGRLPVV+F           A+MMQLG D            +P K A+AIV A THY D E++A +S GLG AM G+ +S
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPAKFARAIVEATTHYEDYELIASLSKGLGNAMKGIEIS 282          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_BACC3 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain 03BB102) GN=pdxS PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.659e-43
Identity = 84/167 (50.30%), Postives = 116/167 (69.46%), Query Frame = -2
Query:  256 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS 756
            H+NK ++ +PFVCGCR++GEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V  +IR + ++ +DE+ T+AK   APY+++++ K+LGRLPVV+F           A+MMQLG D            +P K A+AIV A THY D E++A +S GLG AM G+ +S
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPAKFARAIVEATTHYEDYELIASLSKGLGNAMKGIEIS 282          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_BACC1 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain ATCC 10987) GN=pdxS PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.659e-43
Identity = 84/167 (50.30%), Postives = 116/167 (69.46%), Query Frame = -2
Query:  256 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS 756
            H+NK ++ +PFVCGCR++GEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V  +IR + ++ +DE+ T+AK   APY+++++ K+LGRLPVV+F           A+MMQLG D            +P K A+AIV A THY D E++A +S GLG AM G+ +S
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPAKFARAIVEATTHYEDYELIASLSKGLGNAMKGIEIS 282          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_BACC0 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain AH820) GN=pdxS PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.659e-43
Identity = 84/167 (50.30%), Postives = 116/167 (69.46%), Query Frame = -2
Query:  256 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS 756
            H+NK ++ +PFVCGCR++GEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V  +IR + ++ +DE+ T+AK   APY+++++ K+LGRLPVV+F           A+MMQLG D            +P K A+AIV A THY D E++A +S GLG AM G+ +S
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPAKFARAIVEATTHYEDYELIASLSKGLGNAMKGIEIS 282          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_BACAN (Pyridoxal biosynthesis lyase pdxS OS=Bacillus anthracis GN=pdxS PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.659e-43
Identity = 84/167 (50.30%), Postives = 116/167 (69.46%), Query Frame = -2
Query:  256 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS 756
            H+NK ++ +PFVCGCR++GEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V  +IR + ++ +DE+ T+AK   APY+++++ K+LGRLPVV+F           A+MMQLG D            +P K A+AIV A THY D E++A +S GLG AM G+ +S
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPAKFARAIVEATTHYEDYELIASLSKGLGNAMKGIEIS 282          
The following BLAST results are available for this feature:
BLAST of CN188575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
PDXS_CLOBL2.540e-4350.85Pyridoxal biosynthesis lyase pdxS OS=Clostridium b... [more]
PDXS_STRCO3.318e-4351.40Pyridoxal biosynthesis lyase pdxS OS=Streptomyces ... [more]
PDXS_BACWK4.333e-4350.90Pyridoxal biosynthesis lyase pdxS OS=Bacillus weih... [more]
PDXS_BACHK5.659e-4350.30Pyridoxal biosynthesis lyase pdxS OS=Bacillus thur... [more]
PDXS_BACCZ5.659e-4350.30Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]
PDXS_BACC75.659e-4350.30Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]
PDXS_BACC35.659e-4350.30Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]
PDXS_BACC15.659e-4350.30Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]
PDXS_BACC05.659e-4350.30Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]
PDXS_BACAN5.659e-4350.30Pyridoxal biosynthesis lyase pdxS OS=Bacillus anth... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188575 ID=CN188575; Name=CN188575; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTGCGAAAATATTCATATTGGTAAAGAAGACCATTAG
TTTTCAATTGACAAGTTGTGTAAATTGAACTAACACCCAAAGAAAACATT
ACGACAACTACTGCGGTTTGAAGTTTGAATCCCGCTTACTACATAAGATT
TAAAGAAAAAGGAAAAAGCTTACAGATAATGATTAATAAAGGGCTTCGGG
ACCTCATCTCTTTCATTTATTCGGAGCGACTAGCGAACCTCTCAACCTTG
TGGTCACTCAAATTAAGACCCACCATGGCCTCGCCCAACCCGCAGCTCAC
CTCCGCCAACACCTCCGGGTCACTGTAATGAGTCACCGCCCGTACAATTG
CCTGGGCCCGCTTCACCGGGTCCCCGCTCTTAAACACGCCCGACCCGACA
AACACTCCGTCGCATCCAAGTTGCATCATCATCGCTGCATCCGCCGGCGT
CGCCACTCCTCCCGCTGCGAAGTGCACCACCGGCAACCGCCCCAGCTGCT
TCGTCTGCATCACCAAGTCGTACGGCGCCGCTATCTTCTTTGCGAAAGTG
AACACCTCGTCATCGTCCATGTTCCTCAGAACCCTAATATCCCCCATCAC
AGACCGCACGTGCCTCACCGCTTCGATAATATTCCCCGTTCCGGCCTCGC
CCTTCGTTCTTATCATCGCCGCGCCTTCGCGAATCCTCCTCAAAGCTTCC
CCCAAGTTCCGGCAGCCGCATACGAAGGGGATACGAAAGTTGTGCTTGTT
GATGTGATTC
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