CN188575

Overview
NameCN188575
Unique NameCN188575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_BACAC (Pyridoxal biosynthesis lyase pdxS OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=pdxS PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.659e-43
Identity = 84/167 (50.30%), Postives = 116/167 (69.46%), Query Frame = -2 
Query:  256 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS 756
            H+NK ++ +PFVCGCR++GEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V  +IR + ++ +DE+ T+AK   APY+++++ K+LGRLPVV+F           A+MMQLG D            +P K A+AIV A THY D E++A +S GLG AM G+ +S
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPAKFARAIVEATTHYEDYELIASLSKGLGNAMKGIEIS 282
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_BACAA (Pyridoxal biosynthesis lyase pdxS OS=Bacillus anthracis (strain A0248) GN=pdxS PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.659e-43
Identity = 84/167 (50.30%), Postives = 116/167 (69.46%), Query Frame = -2 
Query:  256 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS 756
            H+NK ++ +PFVCGCR++GEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V  +IR + ++ +DE+ T+AK   APY+++++ K+LGRLPVV+F           A+MMQLG D            +P K A+AIV A THY D E++A +S GLG AM G+ +S
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPAKFARAIVEATTHYEDYELIASLSKGLGNAMKGIEIS 282
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_THEP3 (Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=pdxS PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.391e-43
Identity = 95/179 (53.07%), Postives = 122/179 (68.16%), Query Frame = -2 
Query:  226 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS--DHKVERFASR 756
            HI+K  F+IPFVCG RNLGEALRRI EGA+MIRTKGEAGTGN++EAVRH+R +  +I+ L  + +DE+   AK++ APY+LV    Q GRLPVV+F           A+MMQLG D            +P K A+AIV+AVT+Y  PE+LAEVS GLGEAM  +++   D K + +ASR
Sbjct:  113 HIDKWAFKIPFVCGARNLGEALRRIGEGASMIRTKGEAGTGNVVEAVRHMRIINAEIKRLTTLREDELMAAAKELQAPYELVKYVAQHGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSQNPEKMAEAIVKAVTYYDKPEILAEVSEGLGEAMQSIDIRKLDEK-DLYASR 290
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_STAAW (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain MW2) GN=pdxS PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 88/172 (51.16%), Postives = 113/172 (65.70%), Query Frame = -2 
Query:  241 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 756
            H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ TFAK I APY+++ Q K  GRLPVV+F           A+MM+LG D            DP K A+AIV+A THY D E++  ++  LG AM GL+++   +E
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLE 287
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_STAAT (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=pdxS PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 88/172 (51.16%), Postives = 113/172 (65.70%), Query Frame = -2 
Query:  241 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 756
            H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ TFAK I APY+++ Q K  GRLPVV+F           A+MM+LG D            DP K A+AIV+A THY D E++  ++  LG AM GL+++   +E
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLE 287
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_STAAS (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain MSSA476) GN=pdxS PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 88/172 (51.16%), Postives = 113/172 (65.70%), Query Frame = -2 
Query:  241 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 756
            H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ TFAK I APY+++ Q K  GRLPVV+F           A+MM+LG D            DP K A+AIV+A THY D E++  ++  LG AM GL+++   +E
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLE 287
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_STAAR (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain MRSA252) GN=pdxS PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 88/172 (51.16%), Postives = 113/172 (65.70%), Query Frame = -2 
Query:  241 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 756
            H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ TFAK I APY+++ Q K  GRLPVV+F           A+MM+LG D            DP K A+AIV+A THY D E++  ++  LG AM GL+++   +E
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLE 287
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_STAAN (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain N315) GN=pdxS PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 88/172 (51.16%), Postives = 113/172 (65.70%), Query Frame = -2 
Query:  241 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 756
            H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ TFAK I APY+++ Q K  GRLPVV+F           A+MM+LG D            DP K A+AIV+A THY D E++  ++  LG AM GL+++   +E
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLE 287
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_STAAM (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdxS PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 88/172 (51.16%), Postives = 113/172 (65.70%), Query Frame = -2 
Query:  241 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 756
            H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ TFAK I APY+++ Q K  GRLPVV+F           A+MM+LG D            DP K A+AIV+A THY D E++  ++  LG AM GL+++   +E
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLE 287
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_STAAE (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain Newman) GN=pdxS PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 88/172 (51.16%), Postives = 113/172 (65.70%), Query Frame = -2 
Query:  241 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 756
            H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ TFAK I APY+++ Q K  GRLPVV+F           A+MM+LG D            DP K A+AIV+A THY D E++  ++  LG AM GL+++   +E
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLE 287
The following BLAST results are available for this feature:
BLAST of CN188575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
PDXS_BACAC5.659e-4350.30Pyridoxal biosynthesis lyase pdxS OS=Bacillus anth... [more]
PDXS_BACAA5.659e-4350.30Pyridoxal biosynthesis lyase pdxS OS=Bacillus anth... [more]
PDXS_THEP37.391e-4353.07Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerob... [more]
PDXS_STAAW1.261e-4251.16Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAAT1.261e-4251.16Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAAS1.261e-4251.16Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAAR1.261e-4251.16Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAAN1.261e-4251.16Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAAM1.261e-4251.16Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAAE1.261e-4251.16Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188575 ID=CN188575; Name=CN188575; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTGCGAAAATATTCATATTGGTAAAGAAGACCATTAG
TTTTCAATTGACAAGTTGTGTAAATTGAACTAACACCCAAAGAAAACATT
ACGACAACTACTGCGGTTTGAAGTTTGAATCCCGCTTACTACATAAGATT
TAAAGAAAAAGGAAAAAGCTTACAGATAATGATTAATAAAGGGCTTCGGG
ACCTCATCTCTTTCATTTATTCGGAGCGACTAGCGAACCTCTCAACCTTG
TGGTCACTCAAATTAAGACCCACCATGGCCTCGCCCAACCCGCAGCTCAC
CTCCGCCAACACCTCCGGGTCACTGTAATGAGTCACCGCCCGTACAATTG
CCTGGGCCCGCTTCACCGGGTCCCCGCTCTTAAACACGCCCGACCCGACA
AACACTCCGTCGCATCCAAGTTGCATCATCATCGCTGCATCCGCCGGCGT
CGCCACTCCTCCCGCTGCGAAGTGCACCACCGGCAACCGCCCCAGCTGCT
TCGTCTGCATCACCAAGTCGTACGGCGCCGCTATCTTCTTTGCGAAAGTG
AACACCTCGTCATCGTCCATGTTCCTCAGAACCCTAATATCCCCCATCAC
AGACCGCACGTGCCTCACCGCTTCGATAATATTCCCCGTTCCGGCCTCGC
CCTTCGTTCTTATCATCGCCGCGCCTTCGCGAATCCTCCTCAAAGCTTCC
CCCAAGTTCCGGCAGCCGCATACGAAGGGGATACGAAAGTTGTGCTTGTT
GATGTGATTC
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