CN188575

Overview
NameCN188575
Unique NameCN188575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_STAAC (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain COL) GN=pdxS PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 88/172 (51.16%), Postives = 113/172 (65.70%), Query Frame = -2 
Query:  241 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 756
            H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ TFAK I APY+++ Q K  GRLPVV+F           A+MM+LG D            DP K A+AIV+A THY D E++  ++  LG AM GL+++   +E
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLE 287
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_STAA9 (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain JH9) GN=pdxS PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 88/172 (51.16%), Postives = 113/172 (65.70%), Query Frame = -2 
Query:  241 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 756
            H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ TFAK I APY+++ Q K  GRLPVV+F           A+MM+LG D            DP K A+AIV+A THY D E++  ++  LG AM GL+++   +E
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLE 287
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_STAA8 (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain NCTC 8325) GN=pdxS PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 88/172 (51.16%), Postives = 113/172 (65.70%), Query Frame = -2 
Query:  241 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 756
            H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ TFAK I APY+++ Q K  GRLPVV+F           A+MM+LG D            DP K A+AIV+A THY D E++  ++  LG AM GL+++   +E
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLE 287
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_STAA3 (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain USA300) GN=pdxS PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 88/172 (51.16%), Postives = 113/172 (65.70%), Query Frame = -2 
Query:  241 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 756
            H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ TFAK I APY+++ Q K  GRLPVV+F           A+MM+LG D            DP K A+AIV+A THY D E++  ++  LG AM GL+++   +E
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLE 287
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_STAA2 (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain JH1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 88/172 (51.16%), Postives = 113/172 (65.70%), Query Frame = -2 
Query:  241 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 756
            H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ TFAK I APY+++ Q K  GRLPVV+F           A+MM+LG D            DP K A+AIV+A THY D E++  ++  LG AM GL+++   +E
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLE 287
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_STAA1 (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=pdxS PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 88/172 (51.16%), Postives = 113/172 (65.70%), Query Frame = -2 
Query:  241 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 756
            H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ TFAK I APY+++ Q K  GRLPVV+F           A+MM+LG D            DP K A+AIV+A THY D E++  ++  LG AM GL+++   +E
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLE 287
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_BACCR (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=pdxS PE=3 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 84/167 (50.30%), Postives = 116/167 (69.46%), Query Frame = -2 
Query:  256 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS 756
            H+NK ++ +PFVCGCR++GEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V  +IR + ++ +DE+ T+AK   APY+++++ K+LGRLPVV+F           A+MMQLG D            +P K A+AIV A THY D E++A +S GLG AM G+ +S
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKFARAIVEATTHYEDYELIASLSKGLGNAMKGVEIS 282
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_BACCQ (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain Q1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 84/167 (50.30%), Postives = 115/167 (68.86%), Query Frame = -2 
Query:  256 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS 756
            H+NK ++ +PFVCGCR++GEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V  +IR + ++ +DE+ T+AK   APY+++ + K+LGRLPVV+F           A+MMQLG D            +P K A+AIV A THY D E++A +S GLG AM G+ +S
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLREIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPAKFARAIVEATTHYEDYELIASLSKGLGNAMKGIEIS 282
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_BACC4 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain B4264) GN=pdxS PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 84/167 (50.30%), Postives = 116/167 (69.46%), Query Frame = -2 
Query:  256 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS 756
            H+NK ++ +PFVCGCR++GEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V  +IR + ++ +DE+ T+AK   APY+++++ K+LGRLPVV+F           A+MMQLG D            +P K A+AIV A THY D E++A +S GLG AM G+ +S
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKFARAIVEATTHYEDYELIASLSKGLGNAMKGVEIS 282
[Close]
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_MYCPA (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium paratuberculosis GN=pdxS PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.647e-42
Identity = 91/179 (50.84%), Postives = 121/179 (67.60%), Query Frame = -2 
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD-HKVERFASR 759
            +HI+K  F +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R++ G+IR L ++ +DE++  AK++ APY+LV++  + G+LPV  F           AMMMQLG +           GDP +RA AIV+A T Y DP+VLA+VS GLGEAMVG+N+    + ER A R
Sbjct:  123 HHIDKWKFTVPFVCGATNLGEALRRINEGAAMIRSKGEAGTGDVSNATTHMRAIGGEIRRLMSLSEDELYVAAKELQAPYELVVEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGDPAQRAAAIVKATTFYDDPDVLAKVSRGLGEAMVGINVEQIAQPERLAER 301
The following BLAST results are available for this feature:
BLAST of CN188575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
PDXS_STAAC1.261e-4251.16Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAA91.261e-4251.16Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAA81.261e-4251.16Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAA31.261e-4251.16Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAA21.261e-4251.16Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAA11.261e-4251.16Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_BACCR1.261e-4250.30Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]
PDXS_BACCQ1.261e-4250.30Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]
PDXS_BACC41.261e-4250.30Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]
PDXS_MYCPA1.647e-4250.84Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188575 ID=CN188575; Name=CN188575; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTGCGAAAATATTCATATTGGTAAAGAAGACCATTAG
TTTTCAATTGACAAGTTGTGTAAATTGAACTAACACCCAAAGAAAACATT
ACGACAACTACTGCGGTTTGAAGTTTGAATCCCGCTTACTACATAAGATT
TAAAGAAAAAGGAAAAAGCTTACAGATAATGATTAATAAAGGGCTTCGGG
ACCTCATCTCTTTCATTTATTCGGAGCGACTAGCGAACCTCTCAACCTTG
TGGTCACTCAAATTAAGACCCACCATGGCCTCGCCCAACCCGCAGCTCAC
CTCCGCCAACACCTCCGGGTCACTGTAATGAGTCACCGCCCGTACAATTG
CCTGGGCCCGCTTCACCGGGTCCCCGCTCTTAAACACGCCCGACCCGACA
AACACTCCGTCGCATCCAAGTTGCATCATCATCGCTGCATCCGCCGGCGT
CGCCACTCCTCCCGCTGCGAAGTGCACCACCGGCAACCGCCCCAGCTGCT
TCGTCTGCATCACCAAGTCGTACGGCGCCGCTATCTTCTTTGCGAAAGTG
AACACCTCGTCATCGTCCATGTTCCTCAGAACCCTAATATCCCCCATCAC
AGACCGCACGTGCCTCACCGCTTCGATAATATTCCCCGTTCCGGCCTCGC
CCTTCGTTCTTATCATCGCCGCGCCTTCGCGAATCCTCCTCAAAGCTTCC
CCCAAGTTCCGGCAGCCGCATACGAAGGGGATACGAAAGTTGTGCTTGTT
GATGTGATTC
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