CN188575

Overview
NameCN188575
Unique NameCN188575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_MYCA1 (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium avium (strain 104) GN=pdxS PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.647e-42
Identity = 91/179 (50.84%), Postives = 121/179 (67.60%), Query Frame = -2
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD-HKVERFASR 759
            +HI+K  F +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R++ G+IR L ++ +DE++  AK++ APY+LV++  + G+LPV  F           AMMMQLG +           GDP +RA AIV+A T Y DP+VLA+VS GLGEAMVG+N+    + ER A R
Sbjct:  123 HHIDKWKFTVPFVCGATNLGEALRRINEGAAMIRSKGEAGTGDVSNATTHMRAIGGEIRRLMSLSEDELYVAAKELQAPYELVVEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGDPAQRAAAIVKATTFYDDPDVLAKVSRGLGEAMVGINVEQIAQPERLAER 301          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_STRAW (Pyridoxal biosynthesis lyase pdxS OS=Streptomyces avermitilis GN=pdxS PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.150e-42
Identity = 90/179 (50.28%), Postives = 119/179 (66.48%), Query Frame = -2
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD-HKVERFASR 759
            NH +K  F  PFVCG  NLGEALRRI EGAAMIR+KGEAGTGN++EAVRH+R +  +I  LR  D++E++  AK++ APY++V +  +LG+LPVV F           A+M QLG +           GDP KRA AIV+A T Y DP+++A+ S  LGEAMVG+N     + ER+A+R
Sbjct:  124 NHSDKWAFTTPFVCGATNLGEALRRIAEGAAMIRSKGEAGTGNVVEAVRHLRQIKNEIARLRGYDNNELYAAAKELRAPYEIVKEVAELGKLPVVLFSAGGVATPADAALMRQLGAEGVFVGSGIFKSGDPAKRAAAIVKATTFYDDPKIIADASRNLGEAMVGINCDTLPEAERYANR 302          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_DESHY (Pyridoxal biosynthesis lyase pdxS OS=Desulfitobacterium hafniense (strain Y51) GN=pdxS PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.150e-42
Identity = 91/165 (55.15%), Postives = 115/165 (69.70%), Query Frame = -2
Query:  262 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLN 756
            HI+K  F++PFVCG ++LGEALRRI EGAAMIRTKGE GTG+I++AVRH+R +   I  L  M +DE+F  AK++  PYDLV+   +  RLPVV+F           A+MMQLG +           GDP KRAQAIV+AVT+Y DP+VLAE+S  LGEAMVG+N
Sbjct:  114 HIDKTRFKVPFVCGAKDLGEALRRINEGAAMIRTKGEPGTGDIVQAVRHMRMINRQISRLAGMREDELFQEAKELQVPYDLVLYVHEHKRLPVVNFAAGGVATPGDAALMMQLGAEGVFVGSGIFKSGDPEKRAQAIVKAVTNYQDPKVLAELSEDLGEAMVGIN 278          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_DESHD (Pyridoxal biosynthesis lyase pdxS OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=pdxS PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.150e-42
Identity = 91/165 (55.15%), Postives = 115/165 (69.70%), Query Frame = -2
Query:  262 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLN 756
            HI+K  F++PFVCG ++LGEALRRI EGAAMIRTKGE GTG+I++AVRH+R +   I  L  M +DE+F  AK++  PYDLV+   +  RLPVV+F           A+MMQLG +           GDP KRAQAIV+AVT+Y DP+VLAE+S  LGEAMVG+N
Sbjct:  114 HIDKTRFKVPFVCGAKDLGEALRRINEGAAMIRTKGEPGTGDIVQAVRHMRMINRQISRLAGMREDELFQEAKELQVPYDLVLYVHEHKRLPVVNFAAGGVATPGDAALMMQLGAEGVFVGSGIFKSGDPEKRAQAIVKAVTNYQDPKVLAELSEDLGEAMVGIN 278          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_BACC2 (Pyridoxal biosynthesis lyase pdxS OS=Bacillus cereus (strain G9842) GN=pdxS PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.150e-42
Identity = 83/167 (49.70%), Postives = 116/167 (69.46%), Query Frame = -2
Query:  256 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS 756
            H+NK ++ +PFVCGCR++GEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V  +IR + ++ +DE+ T+AK   APY+++++ K+LGRLPVV+F           A+MMQLG D            +P + A+AIV A THY D E++A +S GLG AM G+ +S
Sbjct:  116 HLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPERFARAIVEATTHYEDYELIASLSKGLGNAMKGIEIS 282          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_STAES (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdxS PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.809e-42
Identity = 87/172 (50.58%), Postives = 114/172 (66.28%), Query Frame = -2
Query:  241 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 756
            H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ TFAK + APY+++ Q K  GRLPVV+F           A+MM+LG D            DP K A+AIV+A THY D E++ +++  LG AM GL+++   +E
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRRVNSEVSRLTVMNDDEIMTFAKDLGAPYEVLKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGKLASELGTAMKGLDINQISLE 287          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_STAEQ (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdxS PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.809e-42
Identity = 87/172 (50.58%), Postives = 114/172 (66.28%), Query Frame = -2
Query:  241 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 756
            H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ TFAK + APY+++ Q K  GRLPVV+F           A+MM+LG D            DP K A+AIV+A THY D E++ +++  LG AM GL+++   +E
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRRVNSEVSRLTVMNDDEIMTFAKDLGAPYEVLKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGKLASELGTAMKGLDINQISLE 287          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_STACT (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus carnosus (strain TM300) GN=pdxS PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.809e-42
Identity = 88/172 (51.16%), Postives = 116/172 (67.44%), Query Frame = -2
Query:  241 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 756
            H+ K ++ +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M DDE+ TFAK+I APY+++   K  GRLPVV+F           A+MMQLG D            DP K A+AIV+A THY+D E++ +++  LGEAM GL+++   +E
Sbjct:  116 HLLKSDYTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVAKLTVMPDDEIMTFAKEIGAPYEVLKSIKDNGRLPVVNFAAGGVATPQDAALMMQLGADGVFVGSGIFKSEDPEKFAKAIVQATTHYTDYELIGKLAQELGEAMRGLDVNQLSLE 287          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_THESQ (Pyridoxal biosynthesis lyase pdxS OS=Thermotoga sp. (strain RQ2) GN=pdxS PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.668e-42
Identity = 85/171 (49.71%), Postives = 118/171 (69.01%), Query Frame = -2
Query:  244 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV 756
            HINKH F++PFVCG R+LGEALRRI EGAAMIRTKGEAGTGN++EAV+H+R VM  I+ +  M+D+E+  + K+I AP +L+ + K+LGRLPVV+F           A+MM LG D            DP K A+A+V AVT++ +P +L ++S  +GE M GL++ + +V
Sbjct:  116 HINKHEFKVPFVCGARDLGEALRRIAEGAAMIRTKGEAGTGNVVEAVKHMRRVMEQIKQVTKMEDEELVAYGKEIGAPVELLREVKRLGRLPVVNFAAGGVATPADAALMMMLGADGVFVGSGIFKSKDPRKMAKAMVLAVTYWDNPRILLKISEDIGEPMRGLDVEELEV 286          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_THEMA (Pyridoxal biosynthesis lyase pdxS OS=Thermotoga maritima GN=pdxS PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.668e-42
Identity = 85/171 (49.71%), Postives = 118/171 (69.01%), Query Frame = -2
Query:  244 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV 756
            HINKH F++PFVCG R+LGEALRRI EGAAMIRTKGEAGTGN++EAV+H+R VM  I+ +  M+D+E+  + K+I AP +L+ + K+LGRLPVV+F           A+MM LG D            DP K A+A+V AVT++ +P +L ++S  +GE M GL++ + +V
Sbjct:  116 HINKHEFKVPFVCGARDLGEALRRIAEGAAMIRTKGEAGTGNVVEAVKHMRRVMEQIKQVTKMEDEELVAYGKEIGAPVELLREVKRLGRLPVVNFAAGGVATPADAALMMMLGADGVFVGSGIFKSKDPRKMAKAMVLAVTYWDNPRILLKISEDIGEPMRGLDVEELEV 286          
The following BLAST results are available for this feature:
BLAST of CN188575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
PDXS_MYCA11.647e-4250.84Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_STRAW2.150e-4250.28Pyridoxal biosynthesis lyase pdxS OS=Streptomyces ... [more]
PDXS_DESHY2.150e-4255.15Pyridoxal biosynthesis lyase pdxS OS=Desulfitobact... [more]
PDXS_DESHD2.150e-4255.15Pyridoxal biosynthesis lyase pdxS OS=Desulfitobact... [more]
PDXS_BACC22.150e-4249.70Pyridoxal biosynthesis lyase pdxS OS=Bacillus cere... [more]
PDXS_STAES2.809e-4250.58Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STAEQ2.809e-4250.58Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_STACT2.809e-4251.16Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_THESQ3.668e-4249.71Pyridoxal biosynthesis lyase pdxS OS=Thermotoga sp... [more]
PDXS_THEMA3.668e-4249.71Pyridoxal biosynthesis lyase pdxS OS=Thermotoga ma... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188575 ID=CN188575; Name=CN188575; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTGCGAAAATATTCATATTGGTAAAGAAGACCATTAG
TTTTCAATTGACAAGTTGTGTAAATTGAACTAACACCCAAAGAAAACATT
ACGACAACTACTGCGGTTTGAAGTTTGAATCCCGCTTACTACATAAGATT
TAAAGAAAAAGGAAAAAGCTTACAGATAATGATTAATAAAGGGCTTCGGG
ACCTCATCTCTTTCATTTATTCGGAGCGACTAGCGAACCTCTCAACCTTG
TGGTCACTCAAATTAAGACCCACCATGGCCTCGCCCAACCCGCAGCTCAC
CTCCGCCAACACCTCCGGGTCACTGTAATGAGTCACCGCCCGTACAATTG
CCTGGGCCCGCTTCACCGGGTCCCCGCTCTTAAACACGCCCGACCCGACA
AACACTCCGTCGCATCCAAGTTGCATCATCATCGCTGCATCCGCCGGCGT
CGCCACTCCTCCCGCTGCGAAGTGCACCACCGGCAACCGCCCCAGCTGCT
TCGTCTGCATCACCAAGTCGTACGGCGCCGCTATCTTCTTTGCGAAAGTG
AACACCTCGTCATCGTCCATGTTCCTCAGAACCCTAATATCCCCCATCAC
AGACCGCACGTGCCTCACCGCTTCGATAATATTCCCCGTTCCGGCCTCGC
CCTTCGTTCTTATCATCGCCGCGCCTTCGCGAATCCTCCTCAAAGCTTCC
CCCAAGTTCCGGCAGCCGCATACGAAGGGGATACGAAAGTTGTGCTTGTT
GATGTGATTC
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