CN188575

Overview
NameCN188575
Unique NameCN188575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_MYCS2 (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium smegmatis GN=pdxS PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.668e-42
Identity = 88/169 (52.07%), Postives = 116/169 (68.64%), Query Frame = -2
Query:  253 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD 759
            NHI+K  F +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R + G+IR L +M +DE++  AK++ APY+LV++  + G+LPV  F           AMMMQLG +           G+P +RA AIV+A T Y DP+VLA+VS GLGEAMVG+N+ +
Sbjct:  123 NHIDKWKFTVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSNATTHMRKIGGEIRRLTSMSEDELYVAAKELQAPYELVVEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGNPEQRAAAIVKATTFYDDPDVLAKVSRGLGEAMVGINVEE 291          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_LEIXX (Pyridoxal biosynthesis lyase pdxS OS=Leifsonia xyli subsp. xyli GN=pdxS PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.668e-42
Identity = 90/169 (53.25%), Postives = 114/169 (67.46%), Query Frame = -2
Query:  253 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD 759
            NHI+K +F +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++ EA +H+R +  +I+ L  M  DE++  AK++ APY+LV +  + G LPVV F           AMMMQLG D           G+P +RA AIVRA T   DP V+AEVS GLGEAMVG+N++D
Sbjct:  119 NHIDKWDFTVPFVCGATNLGEALRRIIEGAAMIRSKGEAGTGDVSEATKHIRKITAEIKALTAMSRDELYVAAKELQAPYELVAEIAETGTLPVVLFTAGGVATPADAAMMMQLGADGVFVGSGIFKSGNPERRAAAIVRATTFSDDPSVVAEVSRGLGEAMVGINVAD 287          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_STAHJ (Pyridoxal biosynthesis lyase pdxS OS=Staphylococcus haemolyticus (strain JCSC1435) GN=pdxS PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.791e-42
Identity = 86/172 (50.00%), Postives = 115/172 (66.86%), Query Frame = -2
Query:  241 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE 756
            H+ K  F +PFVCGCRNLGEA RRI EGAAM+RTKGE GTGNI+EAVRH+R V  ++  L  M+DDE+ T+AK++ APY+++ Q K  GRLPVV+F           A+MM+LG D            DP K A+AIV+A THY D E++ +++  LG AM GL+++   +E
Sbjct:  116 HLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRKVNSEVSRLVVMNDDEIMTYAKELGAPYEVLKQIKDHGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGKLASELGTAMKGLDINQISLE 287          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_THEP1 (Pyridoxal biosynthesis lyase pdxS OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=pdxS PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.172e-42
Identity = 84/171 (49.12%), Postives = 118/171 (69.01%), Query Frame = -2
Query:  244 HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV 756
            HINKH F++PFVCG R+LGEALRRI EGAAMIRTKGEAGTGN++EAV+H+R +M  I+ +  M+D+E+  + K+I AP +L+ + K+LGRLPVV+F           A+MM LG D            DP K A+A+V AVT++ +P +L ++S  +GE M GL++ + +V
Sbjct:  116 HINKHEFKVPFVCGARDLGEALRRIAEGAAMIRTKGEAGTGNVVEAVKHMRRMMEQIKQVTKMEDEELVAYGKEIGAPVELLREVKRLGRLPVVNFAAGGVATPADAALMMMLGADGVFVGSGIFKSKDPRKMAKAMVLAVTYWDNPRILLKISEDIGEPMRGLDVEELEV 286          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_NOCFA (Pyridoxal biosynthesis lyase pdxS OS=Nocardia farcinica GN=pdxS PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.067e-41
Identity = 87/169 (51.48%), Postives = 115/169 (68.05%), Query Frame = -2
Query:  253 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD 759
            NHI+K  F +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R +  +IR L  + +DE++  AK++ APY+LV +  + G+LPVV F           AMMMQLG +           G+P +RA+AIV+A T Y DP+VLA+VS GLGEAMVG+N+ +
Sbjct:  126 NHIDKWQFTVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSNATTHMRKIRQEIRKLAALPEDELYVAAKELQAPYELVREVAETGKLPVVLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGNPAQRAEAIVKATTFYDDPDVLAKVSRGLGEAMVGINVEE 294          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_MYCTU (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium tuberculosis GN=pdxS PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.067e-41
Identity = 92/179 (51.40%), Postives = 119/179 (66.48%), Query Frame = -2
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV-ERFASR 759
            +HI+K NF +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R++ G+IR L +M +DE+F  AK++ APY+LV +  + G+LPV  F           AMMMQLG +           G P  RA AIV+A T + DP+VLA+VS GLGEAMVG+N+ +  V  R A R
Sbjct:  119 HHIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGEAGTGDVSNATTHMRAIGGEIRRLTSMSEDELFVAAKELQAPYELVAEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGAPEHRAAAIVKATTFFDDPDVLAKVSRGLGEAMVGINVDEIAVGHRLAQR 297          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_MYCTA (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=pdxS PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.067e-41
Identity = 92/179 (51.40%), Postives = 119/179 (66.48%), Query Frame = -2
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV-ERFASR 759
            +HI+K NF +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R++ G+IR L +M +DE+F  AK++ APY+LV +  + G+LPV  F           AMMMQLG +           G P  RA AIV+A T + DP+VLA+VS GLGEAMVG+N+ +  V  R A R
Sbjct:  119 HHIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGEAGTGDVSNATTHMRAIGGEIRRLTSMSEDELFVAAKELQAPYELVAEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGAPEHRAAAIVKATTFFDDPDVLAKVSRGLGEAMVGINVDEIAVGHRLAQR 297          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_MYCBT (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=pdxS PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.067e-41
Identity = 92/179 (51.40%), Postives = 119/179 (66.48%), Query Frame = -2
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV-ERFASR 759
            +HI+K NF +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R++ G+IR L +M +DE+F  AK++ APY+LV +  + G+LPV  F           AMMMQLG +           G P  RA AIV+A T + DP+VLA+VS GLGEAMVG+N+ +  V  R A R
Sbjct:  119 HHIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGEAGTGDVSNATTHMRAIGGEIRRLTSMSEDELFVAAKELQAPYELVAEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGAPEHRAAAIVKATTFFDDPDVLAKVSRGLGEAMVGINVDEIAVGHRLAQR 297          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_MYCBP (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=pdxS PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.067e-41
Identity = 92/179 (51.40%), Postives = 119/179 (66.48%), Query Frame = -2
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV-ERFASR 759
            +HI+K NF +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R++ G+IR L +M +DE+F  AK++ APY+LV +  + G+LPV  F           AMMMQLG +           G P  RA AIV+A T + DP+VLA+VS GLGEAMVG+N+ +  V  R A R
Sbjct:  119 HHIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGEAGTGDVSNATTHMRAIGGEIRRLTSMSEDELFVAAKELQAPYELVAEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGAPEHRAAAIVKATTFFDDPDVLAKVSRGLGEAMVGINVDEIAVGHRLAQR 297          
BLAST of CN188575 vs. ExPASy Swiss-Prot
Match: PDXS_MYCBO (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium bovis GN=pdxS PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.067e-41
Identity = 92/179 (51.40%), Postives = 119/179 (66.48%), Query Frame = -2
Query:  226 NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXAMMMQLGCDXXXXXXXXXXXGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV-ERFASR 759
            +HI+K NF +PFVCG  NLGEALRRI EGAAMIR+KGEAGTG++  A  H+R++ G+IR L +M +DE+F  AK++ APY+LV +  + G+LPV  F           AMMMQLG +           G P  RA AIV+A T + DP+VLA+VS GLGEAMVG+N+ +  V  R A R
Sbjct:  119 HHIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGEAGTGDVSNATTHMRAIGGEIRRLTSMSEDELFVAAKELQAPYELVAEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGAPEHRAAAIVKATTFFDDPDVLAKVSRGLGEAMVGINVDEIAVGHRLAQR 297          
The following BLAST results are available for this feature:
BLAST of CN188575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
PDXS_MYCS23.668e-4252.07Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_LEIXX3.668e-4253.25Pyridoxal biosynthesis lyase pdxS OS=Leifsonia xyl... [more]
PDXS_STAHJ4.791e-4250.00Pyridoxal biosynthesis lyase pdxS OS=Staphylococcu... [more]
PDXS_THEP18.172e-4249.12Pyridoxal biosynthesis lyase pdxS OS=Thermotoga pe... [more]
PDXS_NOCFA1.067e-4151.48Pyridoxal biosynthesis lyase pdxS OS=Nocardia farc... [more]
PDXS_MYCTU1.067e-4151.40Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_MYCTA1.067e-4151.40Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_MYCBT1.067e-4151.40Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_MYCBP1.067e-4151.40Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_MYCBO1.067e-4151.40Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006F10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188575 ID=CN188575; Name=CN188575; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTGCGAAAATATTCATATTGGTAAAGAAGACCATTAG
TTTTCAATTGACAAGTTGTGTAAATTGAACTAACACCCAAAGAAAACATT
ACGACAACTACTGCGGTTTGAAGTTTGAATCCCGCTTACTACATAAGATT
TAAAGAAAAAGGAAAAAGCTTACAGATAATGATTAATAAAGGGCTTCGGG
ACCTCATCTCTTTCATTTATTCGGAGCGACTAGCGAACCTCTCAACCTTG
TGGTCACTCAAATTAAGACCCACCATGGCCTCGCCCAACCCGCAGCTCAC
CTCCGCCAACACCTCCGGGTCACTGTAATGAGTCACCGCCCGTACAATTG
CCTGGGCCCGCTTCACCGGGTCCCCGCTCTTAAACACGCCCGACCCGACA
AACACTCCGTCGCATCCAAGTTGCATCATCATCGCTGCATCCGCCGGCGT
CGCCACTCCTCCCGCTGCGAAGTGCACCACCGGCAACCGCCCCAGCTGCT
TCGTCTGCATCACCAAGTCGTACGGCGCCGCTATCTTCTTTGCGAAAGTG
AACACCTCGTCATCGTCCATGTTCCTCAGAACCCTAATATCCCCCATCAC
AGACCGCACGTGCCTCACCGCTTCGATAATATTCCCCGTTCCGGCCTCGC
CCTTCGTTCTTATCATCGCCGCGCCTTCGCGAATCCTCCTCAAAGCTTCC
CCCAAGTTCCGGCAGCCGCATACGAAGGGGATACGAAAGTTGTGCTTGTT
GATGTGATTC
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