CN181474

Overview
NameCN181474
Unique NameCN181474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:7..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_ASPOR (ATP-dependent RNA helicase eIF4A OS=Aspergillus oryzae GN=tif1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 43/78 (55.13%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  280 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 513
            LKPELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ +PN     AL+L  TRELA QI
Sbjct:   55 LKPELLRGVYAYGFERPSAIQQRAIKPIIKGSDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQI 132          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX6_DICDI (Probable ATP-dependent RNA helicase ddx6 OS=Dictyostelium discoideum GN=ddx6 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 41/109 (37.61%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            F D  LK +LLR I + G+  PS +Q + IP A+ G D++ +AK+G GKTA F++  L++T+P    +  L+L  TRELA Q     +    Y+ +++V    GG ++K
Sbjct:   51 FDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALEKTDPTKDVIQVLILVPTRELALQTSQVCKELGKYM-NVQVMASTGGTSLK 158          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_DROME (Eukaryotic initiation factor 4A OS=Drosophila melanogaster GN=eIF-4a PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15
Identity = 48/123 (39.02%), Postives = 66/123 (53.66%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            F D  L+ ELLR I   GFE PS +Q   I   + G DVI QA+SG GKTA F ++ LQQ + +  +  AL+L  TRELA QI         Y+  +      GG N++    +L++ C  +V
Sbjct:   32 FDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYM-KVHSHACIGGTNVREDARILESGCHVVV 153          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A1_RABIT (Eukaryotic initiation factor 4A-I (Fragment) OS=Oryctolagus cuniculus GN=EIF4A1 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15
Identity = 52/123 (42.28%), Postives = 61/123 (49.59%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            F D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E +     ALVL  TRELA QI         Y+         GG N++     L+ E P I+
Sbjct:   26 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHII 147          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A1_PANTR (Eukaryotic initiation factor 4A-I OS=Pan troglodytes GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15
Identity = 52/123 (42.28%), Postives = 61/123 (49.59%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            F D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E +     ALVL  TRELA QI         Y+         GG N++     L+ E P I+
Sbjct:   34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHII 155          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A1_MOUSE (Eukaryotic initiation factor 4A-I OS=Mus musculus GN=Eif4a1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15
Identity = 52/123 (42.28%), Postives = 61/123 (49.59%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            F D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E +     ALVL  TRELA QI         Y+         GG N++     L+ E P I+
Sbjct:   34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHII 155          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A1_MACFA (Eukaryotic initiation factor 4A-I OS=Macaca fascicularis GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15
Identity = 52/123 (42.28%), Postives = 61/123 (49.59%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            F D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E +     ALVL  TRELA QI         Y+         GG N++     L+ E P I+
Sbjct:   34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHII 155          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15
Identity = 52/123 (42.28%), Postives = 61/123 (49.59%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            F D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E +     ALVL  TRELA QI         Y+         GG N++     L+ E P I+
Sbjct:   34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHII 155          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A1_BOVIN (Eukaryotic initiation factor 4A-I OS=Bos taurus GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15
Identity = 52/123 (42.28%), Postives = 61/123 (49.59%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            F D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E +     ALVL  TRELA QI         Y+         GG N++     L+ E P I+
Sbjct:   34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHII 155          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DRS1_SCHPO (ATP-dependent RNA helicase drs1 OS=Schizosaccharomyces pombe GN=drs1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15
Identity = 51/143 (35.66%), Postives = 78/143 (54.55%), Query Frame = 1
Query:  214 ANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQV---TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            A G+  K      HSS F+   L   +L+ + + GFE P+++Q + IP A+LG D++  A +G GKTA F++  L++    P +V     L+LC TRELA Q CH          DI V +  GG+++K+ +  L+   P IV
Sbjct:  245 AEGDKEKSMMTTTHSS-FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQ-CHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKR-PDIV 384          
The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
IF4A_ASPOR6.116e-1555.13ATP-dependent RNA helicase eIF4A OS=Aspergillus or... [more]
DDX6_DICDI6.116e-1537.61Probable ATP-dependent RNA helicase ddx6 OS=Dictyo... [more]
IF4A_DROME7.988e-1539.02Eukaryotic initiation factor 4A OS=Drosophila mela... [more]
IF4A1_RABIT7.988e-1542.28Eukaryotic initiation factor 4A-I (Fragment) OS=Or... [more]
IF4A1_PANTR7.988e-1542.28Eukaryotic initiation factor 4A-I OS=Pan troglodyt... [more]
IF4A1_MOUSE7.988e-1542.28Eukaryotic initiation factor 4A-I OS=Mus musculus ... [more]
IF4A1_MACFA7.988e-1542.28Eukaryotic initiation factor 4A-I OS=Macaca fascic... [more]
IF4A1_HUMAN7.988e-1542.28Eukaryotic initiation factor 4A-I OS=Homo sapiens ... [more]
IF4A1_BOVIN7.988e-1542.28Eukaryotic initiation factor 4A-I OS=Bos taurus GN... [more]
DRS1_SCHPO7.988e-1535.66ATP-dependent RNA helicase drs1 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bp
GAGGATTCTACTCCCTTTCAAATCTTTTTCTCCTTTTATTTTGGCTAATT
ATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCCCAAC
CGTTTATTCAAATACTGGCAGGAATGGGAGAGACAAGAGACAACGAGTAC
GAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGATTC
CGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTA
TACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGT
GCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATG
CATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAG
GGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAG
CCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTT
AGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTG
ATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAA
GATTTGCTGAAAAACGAATGTCCCCCAATTGTTG
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