CN181474

Overview
NameCN181474
Unique NameCN181474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_NEUCR (ATP-dependent RNA helicase eIF4A OS=Neurospora crassa GN=tif-1 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14
Identity = 44/83 (53.01%), Postives = 52/83 (62.65%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 513
            F +  LKPELLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ +P+     AL+L  TRELA QI
Sbjct:   26 FDEMNLKPELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDPSLKACQALILAPTRELAQQI 108          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DHH1_NEUCR (ATP-dependent RNA helicase dhh-1 OS=Neurospora crassa GN=dhh-1 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            + DF+   +LL  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+  L +  P   ++  L+L  TRELA Q     +    +L  I V V  GG  ++
Sbjct:   47 WEDFIHDRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALNKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHL-GINVMVTTGGTGLR 154          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX6_XENTR (Probable ATP-dependent RNA helicase ddx6 OS=Xenopus tropicalis GN=ddx6 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14
Identity = 43/133 (32.33%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  193 PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            P  +  K +   + KG      + F D+ LK ELL  I + G+E PS +Q E IP A+ G D++ +AK+G GK+  +++  L++ +     + A+V+  TRELA Q+     + S ++  +KV    GG N++
Sbjct:   79 PKDLRIKTSDVTSTKG------NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQICIQVSKHMGGVKVMATTGGTNLR 205          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX6_CAVPO (Probable ATP-dependent RNA helicase DDX6 (Fragment) OS=Cavia porcellus GN=DDX6 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14
Identity = 43/133 (32.33%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  193 PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            P  +  K +   + KG      + F D+ LK ELL  I + G+E PS +Q E IP A+ G D++ +AK+G GK+  +++  L++ +     + A+V+  TRELA Q+     + S ++   KV    GG N++
Sbjct:   69 PKDLRIKTSDVTSTKG------NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALTGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR 195          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_EMENI (ATP-dependent RNA helicase eIF4A OS=Emericella nidulans GN=tif1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 50/126 (39.68%), Postives = 68/126 (53.97%), Query Frame = 1
Query:  256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            +  F    LKPELLR +   GFE PS +Q   I   + G DVI QA+SG GKTA F +S LQ+ +PN     AL++  TRELA QI         ++ +I+     GG  ++   + L+ E P IV
Sbjct:   47 TDSFDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQKLDPNVKACQALIVAPTRELAQQIQKVVIAIGDFM-NIQCHACIGGTAVRDDMNALR-EGPQIV 170          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 45/109 (41.28%), Postives = 60/109 (55.05%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            F D  LKP ++R I   G+E PS +Q   I     G DV+ QA+SG GKTA F +S LQ+ + N     AL+L  TRELA QI +       YL ++ V    GG ++K
Sbjct:   25 FDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIQNVITHIGLYL-NVTVHASIGGTSMK 132          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_YEAST (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae GN=FAL1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 50/126 (39.68%), Postives = 65/126 (51.59%), Query Frame = 1
Query:  256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH-KDLLKNECPPI 630
            SS F    LK +LLR I   GFE PS +Q   I Q I G DVI QA+SG GKTA F +  LQ  +     + AL+L  TRELA QI    +    Y+ ++      GG  +K   K + K+ C  +
Sbjct:   22 SSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAV 146          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_YEAS7 (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain YJM789) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 50/126 (39.68%), Postives = 65/126 (51.59%), Query Frame = 1
Query:  256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH-KDLLKNECPPI 630
            SS F    LK +LLR I   GFE PS +Q   I Q I G DVI QA+SG GKTA F +  LQ  +     + AL+L  TRELA QI    +    Y+ ++      GG  +K   K + K+ C  +
Sbjct:   22 SSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAV 146          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX6_PONAB (Probable ATP-dependent RNA helicase DDX6 OS=Pongo abelii GN=DDX6 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 43/133 (32.33%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  193 PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            P  +  K +   + KG      + F D+ LK ELL  I + G+E PS +Q E IP A+ G D++ +AK+G GK+  +++  L++ +     + A+V+  TRELA Q+     + S ++   KV    GG N++
Sbjct:   80 PKDLRIKTSDVTSTKG------NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR 206          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX6_MOUSE (Probable ATP-dependent RNA helicase DDX6 OS=Mus musculus GN=Ddx6 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 43/133 (32.33%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  193 PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            P  +  K +   + KG      + F D+ LK ELL  I + G+E PS +Q E IP A+ G D++ +AK+G GK+  +++  L++ +     + A+V+  TRELA Q+     + S ++   KV    GG N++
Sbjct:   80 PKDLRIKTSDVTSTKG------NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR 206          
The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
IF4A_NEUCR1.043e-1453.01ATP-dependent RNA helicase eIF4A OS=Neurospora cra... [more]
DHH1_NEUCR1.043e-1438.53ATP-dependent RNA helicase dhh-1 OS=Neurospora cra... [more]
DDX6_XENTR1.043e-1432.33Probable ATP-dependent RNA helicase ddx6 OS=Xenopu... [more]
DDX6_CAVPO1.043e-1432.33Probable ATP-dependent RNA helicase DDX6 (Fragment... [more]
IF4A_EMENI1.362e-1439.68ATP-dependent RNA helicase eIF4A OS=Emericella nid... [more]
IF4A_DEBHA1.362e-1441.28ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]
FAL1_YEAST1.362e-1439.68ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_YEAS71.362e-1439.68ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
DDX6_PONAB1.362e-1432.33Probable ATP-dependent RNA helicase DDX6 OS=Pongo ... [more]
DDX6_MOUSE1.362e-1432.33Probable ATP-dependent RNA helicase DDX6 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bp
GAGGATTCTACTCCCTTTCAAATCTTTTTCTCCTTTTATTTTGGCTAATT
ATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCCCAAC
CGTTTATTCAAATACTGGCAGGAATGGGAGAGACAAGAGACAACGAGTAC
GAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGATTC
CGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTA
TACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGT
GCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATG
CATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAG
GGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAG
CCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTT
AGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTG
ATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAA
GATTTGCTGAAAAACGAATGTCCCCCAATTGTTG
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