CN181474
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_NEUCR (ATP-dependent RNA helicase eIF4A OS=Neurospora crassa GN=tif-1 PE=3 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14 Identity = 44/83 (53.01%), Postives = 52/83 (62.65%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 513 F + LKPELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQ+ +P+ AL+L TRELA QI Sbjct: 26 FDEMNLKPELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDPSLKACQALILAPTRELAQQI 108
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DHH1_NEUCR (ATP-dependent RNA helicase dhh-1 OS=Neurospora crassa GN=dhh-1 PE=3 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14 Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591 + DF+ +LL I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ L + P ++ L+L TRELA Q + +L I V V GG ++ Sbjct: 47 WEDFIHDRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALNKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHL-GINVMVTTGGTGLR 154
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX6_XENTR (Probable ATP-dependent RNA helicase ddx6 OS=Xenopus tropicalis GN=ddx6 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14 Identity = 43/133 (32.33%), Postives = 73/133 (54.89%), Query Frame = 1 Query: 193 PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591 P + K + + KG + F D+ LK ELL I + G+E PS +Q E IP A+ G D++ +AK+G GK+ +++ L++ + + A+V+ TRELA Q+ + S ++ +KV GG N++ Sbjct: 79 PKDLRIKTSDVTSTKG------NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQICIQVSKHMGGVKVMATTGGTNLR 205
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX6_CAVPO (Probable ATP-dependent RNA helicase DDX6 (Fragment) OS=Cavia porcellus GN=DDX6 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14 Identity = 43/133 (32.33%), Postives = 72/133 (54.14%), Query Frame = 1 Query: 193 PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591 P + K + + KG + F D+ LK ELL I + G+E PS +Q E IP A+ G D++ +AK+G GK+ +++ L++ + + A+V+ TRELA Q+ + S ++ KV GG N++ Sbjct: 69 PKDLRIKTSDVTSTKG------NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALTGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR 195
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_EMENI (ATP-dependent RNA helicase eIF4A OS=Emericella nidulans GN=tif1 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14 Identity = 50/126 (39.68%), Postives = 68/126 (53.97%), Query Frame = 1 Query: 256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633 + F LKPELLR + GFE PS +Q I + G DVI QA+SG GKTA F +S LQ+ +PN AL++ TRELA QI ++ +I+ GG ++ + L+ E P IV Sbjct: 47 TDSFDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQKLDPNVKACQALIVAPTRELAQQIQKVVIAIGDFM-NIQCHACIGGTAVRDDMNALR-EGPQIV 170
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14 Identity = 45/109 (41.28%), Postives = 60/109 (55.05%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591 F D LKP ++R I G+E PS +Q I G DV+ QA+SG GKTA F +S LQ+ + N AL+L TRELA QI + YL ++ V GG ++K Sbjct: 25 FDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIQNVITHIGLYL-NVTVHASIGGTSMK 132
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_YEAST (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae GN=FAL1 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14 Identity = 50/126 (39.68%), Postives = 65/126 (51.59%), Query Frame = 1 Query: 256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH-KDLLKNECPPI 630 SS F LK +LLR I GFE PS +Q I Q I G DVI QA+SG GKTA F + LQ + + AL+L TRELA QI + Y+ ++ GG +K K + K+ C + Sbjct: 22 SSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAV 146
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_YEAS7 (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain YJM789) GN=FAL1 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14 Identity = 50/126 (39.68%), Postives = 65/126 (51.59%), Query Frame = 1 Query: 256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH-KDLLKNECPPI 630 SS F LK +LLR I GFE PS +Q I Q I G DVI QA+SG GKTA F + LQ + + AL+L TRELA QI + Y+ ++ GG +K K + K+ C + Sbjct: 22 SSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAV 146
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX6_PONAB (Probable ATP-dependent RNA helicase DDX6 OS=Pongo abelii GN=DDX6 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14 Identity = 43/133 (32.33%), Postives = 72/133 (54.14%), Query Frame = 1 Query: 193 PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591 P + K + + KG + F D+ LK ELL I + G+E PS +Q E IP A+ G D++ +AK+G GK+ +++ L++ + + A+V+ TRELA Q+ + S ++ KV GG N++ Sbjct: 80 PKDLRIKTSDVTSTKG------NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR 206
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX6_MOUSE (Probable ATP-dependent RNA helicase DDX6 OS=Mus musculus GN=Ddx6 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14 Identity = 43/133 (32.33%), Postives = 72/133 (54.14%), Query Frame = 1 Query: 193 PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591 P + K + + KG + F D+ LK ELL I + G+E PS +Q E IP A+ G D++ +AK+G GK+ +++ L++ + + A+V+ TRELA Q+ + S ++ KV GG N++ Sbjct: 80 PKDLRIKTSDVTSTKG------NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR 206 The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bpback to top |