CN181474
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX6_HUMAN (Probable ATP-dependent RNA helicase DDX6 OS=Homo sapiens GN=DDX6 PE=1 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14 Identity = 43/133 (32.33%), Postives = 72/133 (54.14%), Query Frame = 1 Query: 193 PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591 P + K + + KG + F D+ LK ELL I + G+E PS +Q E IP A+ G D++ +AK+G GK+ +++ L++ + + A+V+ TRELA Q+ + S ++ KV GG N++ Sbjct: 80 PKDLRIKTSDVTSTKG------NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR 206
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX6_CHICK (Probable ATP-dependent RNA helicase DDX6 OS=Gallus gallus GN=DDX6 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14 Identity = 43/133 (32.33%), Postives = 72/133 (54.14%), Query Frame = 1 Query: 193 PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591 P + K + + KG + F D+ LK ELL I + G+E PS +Q E IP A+ G D++ +AK+G GK+ +++ L++ + + A+V+ TRELA Q+ + S ++ KV GG N++ Sbjct: 80 PKDLRIKTSDVTSTKG------NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR 206
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DBP9_NEUCR (ATP-dependent RNA helicase dbp-9 OS=Neurospora crassa GN=dbp-9 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14 Identity = 51/130 (39.23%), Postives = 72/130 (55.38%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL------QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY-LPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633 F D L P L++A+ FE P+ VQ + IP A+ G DV+C+AK+G GKTA +VL L + T+P P +AL+L TRELA Q+ + FS + DI+ A V+ + + LL N IV Sbjct: 97 FSDLGLDPRLVQAVAKQSFEKPTLVQRKAIPLALAGQDVLCKAKTGSGKTAAYVLPVLSGILKRKATDPTP-FTSALILVPTRELADQVHKAIDAFSAFCTKDIQSAKLTDNVSDAVLRSLLANAPDVIV 225
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_ASPTN (ATP-dependent RNA helicase eIF4A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif1 PE=3 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 1.779e-14 Identity = 52/126 (41.27%), Postives = 66/126 (52.38%), Query Frame = 1 Query: 256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633 + F LK ELLR + GFE PS +Q I I G DVI QA+SG GKTA F +S LQ+ +PN AL++ TRELA QI ++ +I GG I+ L+ E PPIV Sbjct: 22 TDSFDSMELKAELLRGVYAYGFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQKIDPNLKACQALIVAPTRELAQQIQKVVVAIGDFM-NINCHACIGGTAIRDDMKALQ-EGPPIV 145
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A1_PONAB (Eukaryotic initiation factor 4A-I OS=Pongo abelii GN=EIF4A1 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.779e-14 Identity = 51/121 (42.15%), Postives = 60/121 (49.59%), Query Frame = 1 Query: 271 DFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633 D L LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ E + ALVL TRELA QI Y+ GG N++ L+ E P I+ Sbjct: 36 DMNLSESLLRGIYAYGFEKPSAIQQRAILSCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHII 155
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_CHAGB (ATP-dependent RNA helicase eIF4A OS=Chaetomium globosum GN=TIF1 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.324e-14 Identity = 44/83 (53.01%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 513 F D LK ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQ+ +P AL+L TRELA QI Sbjct: 26 FDDMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDPTVKSCQALILAPTRELAQQI 108
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_CAEEL (Eukaryotic initiation factor 4A OS=Caenorhabditis elegans GN=inf-1 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.324e-14 Identity = 47/109 (43.12%), Postives = 59/109 (54.13%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591 F D LK ELLR I GFE PS +Q I G DVI QA+SG GKTA F +S LQ+ + V ALV+ TRELA QI YL ++ + GG +++ Sbjct: 31 FDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYL-NVNILPCIGGTSVR 138
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_KLULA (ATP-dependent RNA helicase FAL1 OS=Kluyveromyces lactis GN=FAL1 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.324e-14 Identity = 45/97 (46.39%), Postives = 54/97 (55.67%), Query Frame = 1 Query: 256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYL 546 S+ F LKP+LLR I GFE+PS +Q I Q I G DVI QA+SG GKTA F + LQ + ++ ALVL TRELA Q YL Sbjct: 22 SATFESMNLKPDLLRGIYFYGFEYPSSIQSRAISQIISGKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYL 118
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_PICGU (ATP-dependent RNA helicase eIF4A OS=Pichia guilliermondii GN=TIF1 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.035e-14 Identity = 45/109 (41.28%), Postives = 60/109 (55.05%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591 F D LKP ++R I G+E PS +Q I G DV+ QA+SG GKTA F +S LQ+ + N AL+L TRELA QI + YL ++ V GG ++K Sbjct: 24 FDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENLKATQALILAPTRELALQIQNVITHIGLYL-NVTVHASIGGTSMK 131
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_MAGGR (ATP-dependent RNA helicase eIF4A OS=Magnaporthe grisea GN=TIF1 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.035e-14 Identity = 44/83 (53.01%), Postives = 51/83 (61.45%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 513 F + LK ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQ+ + N Q AL+L TRELA QI Sbjct: 25 FDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDTNVKQCQALILAPTRELAQQI 107 The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bpback to top |