CN181474

Overview
NameCN181474
Unique NameCN181474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX6_HUMAN (Probable ATP-dependent RNA helicase DDX6 OS=Homo sapiens GN=DDX6 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 43/133 (32.33%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  193 PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            P  +  K +   + KG      + F D+ LK ELL  I + G+E PS +Q E IP A+ G D++ +AK+G GK+  +++  L++ +     + A+V+  TRELA Q+     + S ++   KV    GG N++
Sbjct:   80 PKDLRIKTSDVTSTKG------NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR 206          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX6_CHICK (Probable ATP-dependent RNA helicase DDX6 OS=Gallus gallus GN=DDX6 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 43/133 (32.33%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  193 PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            P  +  K +   + KG      + F D+ LK ELL  I + G+E PS +Q E IP A+ G D++ +AK+G GK+  +++  L++ +     + A+V+  TRELA Q+     + S ++   KV    GG N++
Sbjct:   80 PKDLRIKTSDVTSTKG------NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR 206          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DBP9_NEUCR (ATP-dependent RNA helicase dbp-9 OS=Neurospora crassa GN=dbp-9 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 51/130 (39.23%), Postives = 72/130 (55.38%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL------QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY-LPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            F D  L P L++A+    FE P+ VQ + IP A+ G DV+C+AK+G GKTA +VL  L      + T+P P   +AL+L  TRELA Q+    + FS +   DI+ A     V+  + + LL N    IV
Sbjct:   97 FSDLGLDPRLVQAVAKQSFEKPTLVQRKAIPLALAGQDVLCKAKTGSGKTAAYVLPVLSGILKRKATDPTP-FTSALILVPTRELADQVHKAIDAFSAFCTKDIQSAKLTDNVSDAVLRSLLANAPDVIV 225          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_ASPTN (ATP-dependent RNA helicase eIF4A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif1 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.779e-14
Identity = 52/126 (41.27%), Postives = 66/126 (52.38%), Query Frame = 1
Query:  256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            +  F    LK ELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ +PN     AL++  TRELA QI         ++ +I      GG  I+     L+ E PPIV
Sbjct:   22 TDSFDSMELKAELLRGVYAYGFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQKIDPNLKACQALIVAPTRELAQQIQKVVVAIGDFM-NINCHACIGGTAIRDDMKALQ-EGPPIV 145          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A1_PONAB (Eukaryotic initiation factor 4A-I OS=Pongo abelii GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.779e-14
Identity = 51/121 (42.15%), Postives = 60/121 (49.59%), Query Frame = 1
Query:  271 DFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            D  L   LLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQQ E +     ALVL  TRELA QI         Y+         GG N++     L+ E P I+
Sbjct:   36 DMNLSESLLRGIYAYGFEKPSAIQQRAILSCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHII 155          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_CHAGB (ATP-dependent RNA helicase eIF4A OS=Chaetomium globosum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.324e-14
Identity = 44/83 (53.01%), Postives = 50/83 (60.24%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 513
            F D  LK ELLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ +P      AL+L  TRELA QI
Sbjct:   26 FDDMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDPTVKSCQALILAPTRELAQQI 108          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_CAEEL (Eukaryotic initiation factor 4A OS=Caenorhabditis elegans GN=inf-1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.324e-14
Identity = 47/109 (43.12%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            F D  LK ELLR I   GFE PS +Q   I     G DVI QA+SG GKTA F +S LQ+ +     V ALV+  TRELA QI         YL ++ +    GG +++
Sbjct:   31 FDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYL-NVNILPCIGGTSVR 138          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_KLULA (ATP-dependent RNA helicase FAL1 OS=Kluyveromyces lactis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.324e-14
Identity = 45/97 (46.39%), Postives = 54/97 (55.67%), Query Frame = 1
Query:  256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYL 546
            S+ F    LKP+LLR I   GFE+PS +Q   I Q I G DVI QA+SG GKTA F +  LQ  +    ++ ALVL  TRELA Q          YL
Sbjct:   22 SATFESMNLKPDLLRGIYFYGFEYPSSIQSRAISQIISGKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYL 118          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_PICGU (ATP-dependent RNA helicase eIF4A OS=Pichia guilliermondii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.035e-14
Identity = 45/109 (41.28%), Postives = 60/109 (55.05%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            F D  LKP ++R I   G+E PS +Q   I     G DV+ QA+SG GKTA F +S LQ+ + N     AL+L  TRELA QI +       YL ++ V    GG ++K
Sbjct:   24 FDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENLKATQALILAPTRELALQIQNVITHIGLYL-NVTVHASIGGTSMK 131          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_MAGGR (ATP-dependent RNA helicase eIF4A OS=Magnaporthe grisea GN=TIF1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.035e-14
Identity = 44/83 (53.01%), Postives = 51/83 (61.45%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 513
            F +  LK ELLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ + N  Q  AL+L  TRELA QI
Sbjct:   25 FDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDTNVKQCQALILAPTRELAQQI 107          
The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DDX6_HUMAN1.362e-1432.33Probable ATP-dependent RNA helicase DDX6 OS=Homo s... [more]
DDX6_CHICK1.362e-1432.33Probable ATP-dependent RNA helicase DDX6 OS=Gallus... [more]
DBP9_NEUCR1.362e-1439.23ATP-dependent RNA helicase dbp-9 OS=Neurospora cra... [more]
IF4A_ASPTN1.779e-1441.27ATP-dependent RNA helicase eIF4A OS=Aspergillus te... [more]
IF4A1_PONAB1.779e-1442.15Eukaryotic initiation factor 4A-I OS=Pongo abelii ... [more]
IF4A_CHAGB2.324e-1453.01ATP-dependent RNA helicase eIF4A OS=Chaetomium glo... [more]
IF4A_CAEEL2.324e-1443.12Eukaryotic initiation factor 4A OS=Caenorhabditis ... [more]
FAL1_KLULA2.324e-1446.39ATP-dependent RNA helicase FAL1 OS=Kluyveromyces l... [more]
IF4A_PICGU3.035e-1441.28ATP-dependent RNA helicase eIF4A OS=Pichia guillie... [more]
IF4A_MAGGR3.035e-1453.01ATP-dependent RNA helicase eIF4A OS=Magnaporthe gr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001A02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bp
GAGGATTCTACTCCCTTTCAAATCTTTTTCTCCTTTTATTTTGGCTAATT
ATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCCCAAC
CGTTTATTCAAATACTGGCAGGAATGGGAGAGACAAGAGACAACGAGTAC
GAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGATTC
CGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTA
TACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGT
GCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATG
CATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAG
GGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAG
CCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTT
AGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTG
ATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAA
GATTTGCTGAAAAACGAATGTCCCCCAATTGTTG
back to top