CN181474
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX6_XENLA (ATP-dependent RNA helicase ddx6 OS=Xenopus laevis GN=ddx6 PE=1 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 3.035e-14 Identity = 43/133 (32.33%), Postives = 72/133 (54.14%), Query Frame = 1 Query: 193 PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591 P + K + + KG + F D+ LK ELL I + G+E PS +Q E IP A+ G D++ +AK+G GK+ +++ L++ + + A+V+ TRELA Q+ + S ++ KV GG N++ Sbjct: 79 PKDLRIKTSDVTSTKG------NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR 205
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.964e-14 Identity = 47/115 (40.87%), Postives = 63/115 (54.78%), Query Frame = 1 Query: 244 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 V +H++ F LKP+LL+ I GFE PS +Q I Q I G D I QA+SG GKTA F + LQ + N AL+L TRELA QI + + Y+ +I GG ++ Sbjct: 22 VKVHAT-FESMNLKPDLLKGIYGYGFEAPSAIQSRAIMQIINGRDTIAQAQSGTGKTATFSIGMLQAIDTNAKDCQALILSPTRELAVQIQNVVKHLGDYM-NIHTHACIGGTHV 134
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_LODEL (ATP-dependent RNA helicase FAL1 OS=Lodderomyces elongisporus GN=FAL1 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.964e-14 Identity = 48/115 (41.74%), Postives = 63/115 (54.78%), Query Frame = 1 Query: 244 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 V +H + F LKPELL+ I GFE PS +Q I Q I G D I QA+SG GKTA F + L+ + + ALVL TRELA QI + + Y+ +I+ GG N+ Sbjct: 22 VKVHRT-FESMRLKPELLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVLDSKSKECQALVLSPTRELATQIQNVIKHLGDYM-NIQTYACIGGKNV 134
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DBPA_ECOLI (ATP-independent RNA helicase dbpA OS=Escherichia coli (strain K12) GN=dbpA PE=1 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 3.964e-14 Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 1 Query: 277 LLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 615 +L P L + + G+ + VQ +P + G DV QAK+G GKTA F L LQQ + + Q ALVLC TRELA Q+ E R + +LP+ K+ GG + +D L++ Sbjct: 9 VLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: MAK5_SCHPO (ATP-dependent RNA helicase mak5 OS=Schizosaccharomyces pombe GN=mak5 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.177e-14 Identity = 49/131 (37.40%), Postives = 73/131 (55.73%), Query Frame = 1 Query: 247 GIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN--PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633 G+ S + F L PE+L ++ +GF P +Q IP+A +G D+I +A +G GKT F + L+ N V ALV+ TRELA+QIC FE P+I+V GG+ ++ + LL N+ P +V Sbjct: 118 GVDVSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKP-SPNIRVMSITGGLAVQKQQRLL-NKHPHVV 246
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_USTMA (ATP-dependent RNA helicase eIF4A OS=Ustilago maydis GN=TIF1 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.177e-14 Identity = 52/124 (41.94%), Postives = 68/124 (54.84%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPPIV 633 F + LK ELLR + GFE PS +Q I I G DVI QA+SG GKTA F ++ LQ+ +P+ V AL+L TRELA QI Y+ I GG N++ +D+ K NE +V Sbjct: 40 FDNMELKEELLRGVYAYGFERPSAIQARAIVPVIKGHDVIAQAQSGTGKTATFSIAILQRIDPSIKAVQALILAPTRELAQQIQKVVIALGDYM-KIDCHACIGGTNVR--EDMAKLNEGAQVV 160
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_YARLI (ATP-dependent RNA helicase eIF4A OS=Yarrowia lipolytica GN=TIF1 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 6.762e-14 Identity = 46/110 (41.82%), Postives = 61/110 (55.45%), Query Frame = 1 Query: 259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 + F D LK ELLR I GFE+PS +Q I I G DV+ QA+SG GKTA F +S LQ + + AL++ TRELA+QI F Y+ I+ GG ++ Sbjct: 22 TSFDDLGLKDELLRGIYGYGFENPSSIQQRAILPVIKGNDVLAQAQSGTGKTATFSISALQNIDEKIKKPQALIIAPTRELAHQIQKVVLAFGEYM-KIECHACIGGTSV 130
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 6.762e-14 Identity = 44/109 (40.37%), Postives = 60/109 (55.05%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591 F D LKP ++R I G+E PS +Q I G DV+ QA+SG GKTA F +S LQ+ + N AL+L TRELA QI + YL ++ V GG +++ Sbjct: 25 FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYL-NVTVHASIGGTSMQ 132
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_PHANO (ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria nodorum GN=TIF1 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 6.762e-14 Identity = 45/104 (43.27%), Postives = 58/104 (55.77%), Query Frame = 1 Query: 280 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591 LK ELLR + GFE PS +Q I I G DVI QA+SG GKTA F +STLQ+ + N AL+L TRELA QI ++ D+ GG +++ Sbjct: 30 LKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISTLQKIDSNVKACQALILAPTRELAQQIQKVVVAIGDFM-DVACHACIGGTSVR 132
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_USTMA (ATP-dependent rRNA helicase RRP3 OS=Ustilago maydis GN=RRP3 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 8.831e-14 Identity = 47/135 (34.81%), Postives = 72/135 (53.33%), Query Frame = 1 Query: 196 DSVATKANGEAAKKGYVGIHSSG----FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 D + A+ E +K I G F D + P+++ A + GF+HP+ +Q + IP+A+ DVI A++G GKTA F + LQ NP A VL TRELAYQI + E + + ++ A GG+++ Sbjct: 79 DKDSPAADEEQDEKKVATIADDGKKVEFSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQALWDNPKPFFACVLAPTRELAYQISQQVEALGSTI-GVRSATIVGGMDM 212 The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bpback to top |