CN181474

Overview
NameCN181474
Unique NameCN181474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:7..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX6_XENLA (ATP-dependent RNA helicase ddx6 OS=Xenopus laevis GN=ddx6 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.035e-14
Identity = 43/133 (32.33%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  193 PDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            P  +  K +   + KG      + F D+ LK ELL  I + G+E PS +Q E IP A+ G D++ +AK+G GK+  +++  L++ +     + A+V+  TRELA Q+     + S ++   KV    GG N++
Sbjct:   79 PKDLRIKTSDVTSTKG------NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLR 205          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.964e-14
Identity = 47/115 (40.87%), Postives = 63/115 (54.78%), Query Frame = 1
Query:  244 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            V +H++ F    LKP+LL+ I   GFE PS +Q   I Q I G D I QA+SG GKTA F +  LQ  + N     AL+L  TRELA QI +  +    Y+ +I      GG ++
Sbjct:   22 VKVHAT-FESMNLKPDLLKGIYGYGFEAPSAIQSRAIMQIINGRDTIAQAQSGTGKTATFSIGMLQAIDTNAKDCQALILSPTRELAVQIQNVVKHLGDYM-NIHTHACIGGTHV 134          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_LODEL (ATP-dependent RNA helicase FAL1 OS=Lodderomyces elongisporus GN=FAL1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.964e-14
Identity = 48/115 (41.74%), Postives = 63/115 (54.78%), Query Frame = 1
Query:  244 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            V +H + F    LKPELL+ I   GFE PS +Q   I Q I G D I QA+SG GKTA F +  L+  +    +  ALVL  TRELA QI +  +    Y+ +I+     GG N+
Sbjct:   22 VKVHRT-FESMRLKPELLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVLDSKSKECQALVLSPTRELATQIQNVIKHLGDYM-NIQTYACIGGKNV 134          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DBPA_ECOLI (ATP-independent RNA helicase dbpA OS=Escherichia coli (strain K12) GN=dbpA PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.964e-14
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 1
Query:  277 LLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 615
            +L P  L  + + G+   + VQ   +P  + G DV  QAK+G GKTA F L  LQQ + +  Q  ALVLC TRELA Q+  E  R + +LP+ K+    GG    + +D L++
Sbjct:    9 VLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: MAK5_SCHPO (ATP-dependent RNA helicase mak5 OS=Schizosaccharomyces pombe GN=mak5 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.177e-14
Identity = 49/131 (37.40%), Postives = 73/131 (55.73%), Query Frame = 1
Query:  247 GIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN--PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            G+  S +  F L PE+L ++  +GF  P  +Q   IP+A +G D+I +A +G GKT  F +  L+    N     V ALV+  TRELA+QIC  FE      P+I+V    GG+ ++  + LL N+ P +V
Sbjct:  118 GVDVSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKP-SPNIRVMSITGGLAVQKQQRLL-NKHPHVV 246          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_USTMA (ATP-dependent RNA helicase eIF4A OS=Ustilago maydis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.177e-14
Identity = 52/124 (41.94%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPPIV 633
            F +  LK ELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F ++ LQ+ +P+   V AL+L  TRELA QI         Y+  I      GG N++  +D+ K NE   +V
Sbjct:   40 FDNMELKEELLRGVYAYGFERPSAIQARAIVPVIKGHDVIAQAQSGTGKTATFSIAILQRIDPSIKAVQALILAPTRELAQQIQKVVIALGDYM-KIDCHACIGGTNVR--EDMAKLNEGAQVV 160          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_YARLI (ATP-dependent RNA helicase eIF4A OS=Yarrowia lipolytica GN=TIF1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.762e-14
Identity = 46/110 (41.82%), Postives = 61/110 (55.45%), Query Frame = 1
Query:  259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            + F D  LK ELLR I   GFE+PS +Q   I   I G DV+ QA+SG GKTA F +S LQ  +    +  AL++  TRELA+QI      F  Y+  I+     GG ++
Sbjct:   22 TSFDDLGLKDELLRGIYGYGFENPSSIQQRAILPVIKGNDVLAQAQSGTGKTATFSISALQNIDEKIKKPQALIIAPTRELAHQIQKVVLAFGEYM-KIECHACIGGTSV 130          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.762e-14
Identity = 44/109 (40.37%), Postives = 60/109 (55.05%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            F D  LKP ++R I   G+E PS +Q   I     G DV+ QA+SG GKTA F +S LQ+ + N     AL+L  TRELA QI +       YL ++ V    GG +++
Sbjct:   25 FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYL-NVTVHASIGGTSMQ 132          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_PHANO (ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria nodorum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.762e-14
Identity = 45/104 (43.27%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  280 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            LK ELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +STLQ+ + N     AL+L  TRELA QI         ++ D+      GG +++
Sbjct:   30 LKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISTLQKIDSNVKACQALILAPTRELAQQIQKVVVAIGDFM-DVACHACIGGTSVR 132          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_USTMA (ATP-dependent rRNA helicase RRP3 OS=Ustilago maydis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.831e-14
Identity = 47/135 (34.81%), Postives = 72/135 (53.33%), Query Frame = 1
Query:  196 DSVATKANGEAAKKGYVGIHSSG----FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            D  +  A+ E  +K    I   G    F D  + P+++ A  + GF+HP+ +Q + IP+A+   DVI  A++G GKTA F +  LQ    NP    A VL  TRELAYQI  + E   + +  ++ A   GG+++
Sbjct:   79 DKDSPAADEEQDEKKVATIADDGKKVEFSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQALWDNPKPFFACVLAPTRELAYQISQQVEALGSTI-GVRSATIVGGMDM 212          
The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DDX6_XENLA3.035e-1432.33ATP-dependent RNA helicase ddx6 OS=Xenopus laevis ... [more]
FAL1_PICST3.964e-1440.87ATP-dependent RNA helicase FAL1 OS=Pichia stipitis... [more]
FAL1_LODEL3.964e-1441.74ATP-dependent RNA helicase FAL1 OS=Lodderomyces el... [more]
DBPA_ECOLI3.964e-1438.94ATP-independent RNA helicase dbpA OS=Escherichia c... [more]
MAK5_SCHPO5.177e-1437.40ATP-dependent RNA helicase mak5 OS=Schizosaccharom... [more]
IF4A_USTMA5.177e-1441.94ATP-dependent RNA helicase eIF4A OS=Ustilago maydi... [more]
IF4A_YARLI6.762e-1441.82ATP-dependent RNA helicase eIF4A OS=Yarrowia lipol... [more]
IF4A_PICST6.762e-1440.37ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]
IF4A_PHANO6.762e-1443.27ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria ... [more]
RRP3_USTMA8.831e-1434.81ATP-dependent rRNA helicase RRP3 OS=Ustilago maydi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001A02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bp
GAGGATTCTACTCCCTTTCAAATCTTTTTCTCCTTTTATTTTGGCTAATT
ATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCCCAAC
CGTTTATTCAAATACTGGCAGGAATGGGAGAGACAAGAGACAACGAGTAC
GAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGATTC
CGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTA
TACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGT
GCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATG
CATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAG
GGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAG
CCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTT
AGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTG
ATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAA
GATTTGCTGAAAAACGAATGTCCCCCAATTGTTG
back to top