CN181474
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_LODEL (ATP-dependent RNA helicase eIF4A OS=Lodderomyces elongisporus GN=TIF1 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 8.831e-14 Identity = 44/108 (40.74%), Postives = 59/108 (54.63%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 F D LKP ++R I G+E PS +Q I G DV+ QA+SG GKTA F +S LQ+ + N AL+L TRELA QI + YL ++ V GG ++ Sbjct: 25 FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYL-NVTVHASIGGTSM 131
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_ASPNC (ATP-dependent RNA helicase eIF4A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif1 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 8.831e-14 Identity = 46/119 (38.66%), Postives = 63/119 (52.94%), Query Frame = 1 Query: 256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612 + F LKPELLR + GFE PS +Q I I G DVI QA+SG GKTA F +S LQ+ + AL++ TRELA QI ++ +I+ GG N++ + L+ Sbjct: 24 TDSFDSMDLKPELLRGVYAYGFERPSAIQQRAIKPIIAGHDVIAQAQSGTGKTATFSISALQKIDQELKACQALIVAPTRELAQQIQKVVVAIGDFM-NIECHACIGGTNVRDDMNALR 141
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_PICGU (ATP-dependent RNA helicase FAL1 OS=Pichia guilliermondii GN=FAL1 PE=3 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 8.831e-14 Identity = 45/108 (41.67%), Postives = 57/108 (52.78%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 F LKPELL+ I + GFE PS +Q I Q I G D I QA+SG GKTA F + L + ALVL TRELA QI + E Y+ +++ GG + Sbjct: 26 FESMNLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILSSIDTKSKDCQALVLSPTRELAQQIENVIEHLGDYM-NVRSHACIGGTQV 132
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_CANGA (ATP-dependent RNA helicase FAL1 OS=Candida glabrata GN=FAL1 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 8.831e-14 Identity = 52/126 (41.27%), Postives = 64/126 (50.79%), Query Frame = 1 Query: 256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH-KDLLKNECPPI 630 S+ F LK LLR I GFE PS +Q I Q I G DVI QA+SG GKTA F + LQ + + ALVL TRELA QI Y+ ++K GG +K K + K+ C I Sbjct: 22 SATFESMDLKEGLLRGIYSYGFEAPSAIQSRAITQIISGKDVIAQAQSGTGKTATFTIGMLQAIDLKKHDLQALVLSPTRELAAQIGKVVTNLGDYM-NVKAYAMTGGKTMKDDLKKIQKHGCQVI 146
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: SRMB_HAEIN (ATP-dependent RNA helicase srmB homolog OS=Haemophilus influenzae GN=srmB PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.506e-13 Identity = 46/120 (38.33%), Postives = 63/120 (52.50%), Query Frame = 1 Query: 259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ----TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL 606 S F F L PELL+A+ G+ P+ +Q E IP A+ DV+ A +G GKTA F+L LQ PG LVL TRELA Q+ + E + + + +A GGV + H D+ Sbjct: 4 SQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPALQHLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQF-THLNIATITGGVAYQNHGDV 122
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.506e-13 Identity = 52/124 (41.94%), Postives = 66/124 (53.23%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPPIV 633 F D LK ELLR I GFE PS +Q I + G D I QA+SG GKTA F +S LQ+ + + ALVL TRELA QI YL ++ GG ++ +D+ + NE P IV Sbjct: 30 FDDMKLKGELLRGIYAYGFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRIDTTVKKTQALVLAPTRELAQQIQKVVIALGDYL-NVDCHACVGGTAVR--EDIARLNEGPHIV 150
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DRS1_DEBHA (ATP-dependent RNA helicase DRS1 OS=Debaryomyces hansenii GN=DRS1 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.506e-13 Identity = 44/151 (29.14%), Postives = 81/151 (53.64%), Query Frame = 1 Query: 190 APDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTA---LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633 A D A+ E A +H++ F+ L +L+ + G+ PS +Q CIP A+LG D++ A +G GKTA +++ +++ P ++++ +VL TRELA Q+C ++ ++ ++ + GG+N++ + LK P IV Sbjct: 236 AEDMAEFYADEEEATTAKKQLHTT-FQSLQLSRPVLKGLSQLGYTKPSPIQSACIPIALLGKDIVAGAVTGSGKTAAYMIPIIERLLYKPAKISSTRVIVLAPTRELAIQVCDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKTR-PDIV 384
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_COCIM (ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis GN=RRP3 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.967e-13 Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 1 Query: 256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 + F+D + L A G++ P+++Q E IP A+ G D+I A++G GKTA F L LQ P + LVL TRELAYQI +FE + L ++ AV GG+++ Sbjct: 47 TKSFKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPQSMFGLVLAPTRELAYQISQQFEALGS-LISVRCAVIVGGMDM 156
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_SCHPO (ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces pombe GN=tif1 PE=1 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 2.570e-13 Identity = 42/83 (50.60%), Postives = 51/83 (61.45%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 513 F D LKPELLR I GFE PS +Q I + DV+ QA+SG GKTA F +S LQ+ + + Q AL+L TRELA QI Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQI 103
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_COCIM (ATP-dependent RNA helicase eIF4A OS=Coccidioides immitis GN=TIF1 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.570e-13 Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 1 Query: 280 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633 L+ ELLR + GFE PS +Q I I G DVI QA+SG GKTA F +S LQ+ + N AL+L TRELA QI ++ ++ GG N++ L N+ P +V Sbjct: 32 LRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFM-SVECHACIGGTNVREDIKAL-NDGPQVV 147 The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bpback to top |