CN181474

Overview
NameCN181474
Unique NameCN181474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_LODEL (ATP-dependent RNA helicase eIF4A OS=Lodderomyces elongisporus GN=TIF1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.831e-14
Identity = 44/108 (40.74%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            F D  LKP ++R I   G+E PS +Q   I     G DV+ QA+SG GKTA F +S LQ+ + N     AL+L  TRELA QI +       YL ++ V    GG ++
Sbjct:   25 FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYL-NVTVHASIGGTSM 131          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_ASPNC (ATP-dependent RNA helicase eIF4A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.831e-14
Identity = 46/119 (38.66%), Postives = 63/119 (52.94%), Query Frame = 1
Query:  256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612
            +  F    LKPELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ +       AL++  TRELA QI         ++ +I+     GG N++   + L+
Sbjct:   24 TDSFDSMDLKPELLRGVYAYGFERPSAIQQRAIKPIIAGHDVIAQAQSGTGKTATFSISALQKIDQELKACQALIVAPTRELAQQIQKVVVAIGDFM-NIECHACIGGTNVRDDMNALR 141          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_PICGU (ATP-dependent RNA helicase FAL1 OS=Pichia guilliermondii GN=FAL1 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.831e-14
Identity = 45/108 (41.67%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            F    LKPELL+ I + GFE PS +Q   I Q I G D I QA+SG GKTA F +  L   +       ALVL  TRELA QI +  E    Y+ +++     GG  +
Sbjct:   26 FESMNLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILSSIDTKSKDCQALVLSPTRELAQQIENVIEHLGDYM-NVRSHACIGGTQV 132          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_CANGA (ATP-dependent RNA helicase FAL1 OS=Candida glabrata GN=FAL1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.831e-14
Identity = 52/126 (41.27%), Postives = 64/126 (50.79%), Query Frame = 1
Query:  256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH-KDLLKNECPPI 630
            S+ F    LK  LLR I   GFE PS +Q   I Q I G DVI QA+SG GKTA F +  LQ  +     + ALVL  TRELA QI         Y+ ++K     GG  +K   K + K+ C  I
Sbjct:   22 SATFESMDLKEGLLRGIYSYGFEAPSAIQSRAITQIISGKDVIAQAQSGTGKTATFTIGMLQAIDLKKHDLQALVLSPTRELAAQIGKVVTNLGDYM-NVKAYAMTGGKTMKDDLKKIQKHGCQVI 146          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: SRMB_HAEIN (ATP-dependent RNA helicase srmB homolog OS=Haemophilus influenzae GN=srmB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.506e-13
Identity = 46/120 (38.33%), Postives = 63/120 (52.50%), Query Frame = 1
Query:  259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ----TEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL 606
            S F  F L PELL+A+   G+  P+ +Q E IP A+   DV+  A +G GKTA F+L  LQ         PG    LVL  TRELA Q+  + E  + +   + +A   GGV  + H D+
Sbjct:    4 SQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPALQHLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQF-THLNIATITGGVAYQNHGDV 122          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.506e-13
Identity = 52/124 (41.94%), Postives = 66/124 (53.23%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPPIV 633
            F D  LK ELLR I   GFE PS +Q   I   + G D I QA+SG GKTA F +S LQ+ +    +  ALVL  TRELA QI         YL ++      GG  ++  +D+ + NE P IV
Sbjct:   30 FDDMKLKGELLRGIYAYGFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRIDTTVKKTQALVLAPTRELAQQIQKVVIALGDYL-NVDCHACVGGTAVR--EDIARLNEGPHIV 150          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DRS1_DEBHA (ATP-dependent RNA helicase DRS1 OS=Debaryomyces hansenii GN=DRS1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.506e-13
Identity = 44/151 (29.14%), Postives = 81/151 (53.64%), Query Frame = 1
Query:  190 APDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTA---LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            A D     A+ E A      +H++ F+   L   +L+ +   G+  PS +Q  CIP A+LG D++  A +G GKTA +++  +++    P ++++   +VL  TRELA Q+C   ++   ++ ++   +  GG+N++  +  LK   P IV
Sbjct:  236 AEDMAEFYADEEEATTAKKQLHTT-FQSLQLSRPVLKGLSQLGYTKPSPIQSACIPIALLGKDIVAGAVTGSGKTAAYMIPIIERLLYKPAKISSTRVIVLAPTRELAIQVCDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKTR-PDIV 384          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_COCIM (ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.967e-13
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 1
Query:  256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            +  F+D  +   L  A    G++ P+++Q E IP A+ G D+I  A++G GKTA F L  LQ     P  +  LVL  TRELAYQI  +FE   + L  ++ AV  GG+++
Sbjct:   47 TKSFKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPQSMFGLVLAPTRELAYQISQQFEALGS-LISVRCAVIVGGMDM 156          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_SCHPO (ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces pombe GN=tif1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.570e-13
Identity = 42/83 (50.60%), Postives = 51/83 (61.45%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 513
            F D  LKPELLR I   GFE PS +Q   I   +   DV+ QA+SG GKTA F +S LQ+ + +  Q  AL+L  TRELA QI
Sbjct:   21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQI 103          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_COCIM (ATP-dependent RNA helicase eIF4A OS=Coccidioides immitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.570e-13
Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 1
Query:  280 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            L+ ELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ + N     AL+L  TRELA QI         ++  ++     GG N++     L N+ P +V
Sbjct:   32 LRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFM-SVECHACIGGTNVREDIKAL-NDGPQVV 147          
The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
IF4A_LODEL8.831e-1440.74ATP-dependent RNA helicase eIF4A OS=Lodderomyces e... [more]
IF4A_ASPNC8.831e-1438.66ATP-dependent RNA helicase eIF4A OS=Aspergillus ni... [more]
FAL1_PICGU8.831e-1441.67ATP-dependent RNA helicase FAL1 OS=Pichia guillier... [more]
FAL1_CANGA8.831e-1441.27ATP-dependent RNA helicase FAL1 OS=Candida glabrat... [more]
SRMB_HAEIN1.506e-1338.33ATP-dependent RNA helicase srmB homolog OS=Haemoph... [more]
IF4A_CRYNE1.506e-1341.94ATP-dependent RNA helicase eIF4A OS=Cryptococcus n... [more]
DRS1_DEBHA1.506e-1329.14ATP-dependent RNA helicase DRS1 OS=Debaryomyces ha... [more]
RRP3_COCIM1.967e-1338.74ATP-dependent rRNA helicase RRP3 OS=Coccidioides i... [more]
IF4A_SCHPO2.570e-1350.60ATP-dependent RNA helicase eIF4A OS=Schizosaccharo... [more]
IF4A_COCIM2.570e-1339.83ATP-dependent RNA helicase eIF4A OS=Coccidioides i... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bp
GAGGATTCTACTCCCTTTCAAATCTTTTTCTCCTTTTATTTTGGCTAATT
ATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCCCAAC
CGTTTATTCAAATACTGGCAGGAATGGGAGAGACAAGAGACAACGAGTAC
GAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGATTC
CGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTA
TACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGT
GCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATG
CATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAG
GGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAG
CCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTT
AGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTG
ATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAA
GATTTGCTGAAAAACGAATGTCCCCCAATTGTTG
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