CN181474
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.570e-13 Identity = 50/123 (40.65%), Postives = 63/123 (51.22%), Query Frame = 1 Query: 256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD-LLKNEC 621 S F LK +LLR I GFE PS +Q I Q I G DVI QA+SG GKTA F + LQ + + ALVL TRELA QI Y+ +++ GG +K + + KN C Sbjct: 22 SPTFESMNLKDDLLRGIYGYGFEAPSAIQSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQAIDLKRKDLQALVLSPTRELASQINQVVSNLGDYM-NVQSYAMTGGKTMKDDLNRMQKNGC 143
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX47_DICDI (Probable ATP-dependent RNA helicase ddx47 OS=Dictyostelium discoideum GN=ddx47 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.570e-13 Identity = 41/107 (38.32%), Postives = 59/107 (55.14%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN 585 F + P+++ A GF P E+Q E IP A+ G D+I A++G GKTA FV+ LQ+ P + L L TRELAYQI +F + + +K V GG++ Sbjct: 121 FESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQKLLEAPQGLFCLALAPTRELAYQIADQFNAIGSTI-GVKTCVLVGGID 226
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RH28_ARATH (DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana GN=RH28 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.356e-13 Identity = 48/133 (36.09%), Postives = 71/133 (53.38%), Query Frame = 1 Query: 244 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTA---LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633 V H+ F + L LLRA G++ P+ +Q CIP A+ G D+ A +G GKTA F L TL++ P +V A L+L TRELA QI H + DIK + GG++++ ++++ P IV Sbjct: 162 VSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQI-HSMIQNLAQFTDIKCGLIVGGLSVR-EQEVVLRSMPDIV 292
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RH26_ORYSJ (DEAD-box ATP-dependent RNA helicase 26 OS=Oryza sativa subsp. japonica GN=Os01g0618500 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.356e-13 Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = 1 Query: 238 GYVGIHSSG--FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ--QTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI-KIHKDLLKNECPPIV 633 G VG H S F + P L+AI D+G+E ++VQ +P + G DV+ +AK+G GKT F+L ++ T P + LV+C TRELA Q+ E + Y + V V GG + + + + N C +V Sbjct: 65 GVVGSHLSETRFDQCPVSPLSLKAIKDAGYEKMTQVQEATLPIILQGEDVLAKAKTGTGKTVAFLLPAIELLSTLPRSPSINLLVICPTRELANQVAAEARKLLKYHRSLGVQVVIGGTKLPQEQRSMQSNPCQILV 201
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RH26_ARATH (DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana GN=RH26 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 3.356e-13 Identity = 50/150 (33.33%), Postives = 71/150 (47.33%), Query Frame = 1 Query: 211 KANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP--------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPPIV 633 K GE K + + F F L P L+AI D+GFE + VQ +P + G DV+ +AK+G GKT F+L ++ +P + LV+C TRELA Q E Y P I V V GG + + ++ N C +V Sbjct: 366 KPTGEHVKTSDSYLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILV 515
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_CANAL (ATP-dependent RNA helicase eIF4A OS=Candida albicans GN=TIF1 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.356e-13 Identity = 44/108 (40.74%), Postives = 57/108 (52.78%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 F D LKP ++R I G+E PS +Q I G DV+ QA+SG GKTA F +S LQ+ N AL+L TRELA QI + YL + V GG ++ Sbjct: 25 FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRINENEKATQALILAPTRELALQIKNVITAIGLYL-KVTVHASIGGTSM 131
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_CANAL (ATP-dependent RNA helicase FAL1 OS=Candida albicans GN=FAL1 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.356e-13 Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 F LKP+LL+ I GFE PS +Q I Q I G D I QA+SG GKTA F + L+ + + AL+L TRELA QI + + Y+ +I GG N+ Sbjct: 28 FESMNLKPDLLKGIYAYGFETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYM-NIHTHACIGGKNV 134
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Schizaphis graminum GN=deaD PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.356e-13 Identity = 47/128 (36.72%), Postives = 65/128 (50.78%), Query Frame = 1 Query: 253 HSSGFRDFL-LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633 H+ FL L P +++++ G+ PS +Q CIP + G DV+ A++G GKTA F L L N LVL TRELA Q+ F FS Y+ I V YGG ++ L+ + P IV Sbjct: 3 HTESTFSFLGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRALR-QGPQIV 129
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_SCLS1 (ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rrp3 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13 Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = 1 Query: 256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 + F+D + L A G++ P+ +Q E IP A+ G D+I A++G GKTA F L LQ P + LVL TRELAYQI FE + + +K AV GG+++ Sbjct: 55 TKSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQSLLDKPQPLFGLVLAPTRELAYQISQSFEALGSII-RVKCAVIVGGMDM 164
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_BOTFB (ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain B05.10) GN=rrp3 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13 Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 F+D + L A G++ P+ +Q E IP A+ G D+I A++G GKTA F L LQ P + LVL TRELAYQI +FE + + +K AV GG+++ Sbjct: 62 FKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQALLDKPQPLFGLVLAPTRELAYQISQQFEALGSVI-RVKCAVIVGGMDM 168 The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bpback to top |