CN181474

Overview
NameCN181474
Unique NameCN181474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.570e-13
Identity = 50/123 (40.65%), Postives = 63/123 (51.22%), Query Frame = 1
Query:  256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD-LLKNEC 621
            S  F    LK +LLR I   GFE PS +Q   I Q I G DVI QA+SG GKTA F +  LQ  +     + ALVL  TRELA QI         Y+ +++     GG  +K   + + KN C
Sbjct:   22 SPTFESMNLKDDLLRGIYGYGFEAPSAIQSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQAIDLKRKDLQALVLSPTRELASQINQVVSNLGDYM-NVQSYAMTGGKTMKDDLNRMQKNGC 143          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX47_DICDI (Probable ATP-dependent RNA helicase ddx47 OS=Dictyostelium discoideum GN=ddx47 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.570e-13
Identity = 41/107 (38.32%), Postives = 59/107 (55.14%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN 585
            F    + P+++ A    GF  P E+Q E IP A+ G D+I  A++G GKTA FV+  LQ+    P  +  L L  TRELAYQI  +F    + +  +K  V  GG++
Sbjct:  121 FESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQKLLEAPQGLFCLALAPTRELAYQIADQFNAIGSTI-GVKTCVLVGGID 226          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RH28_ARATH (DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana GN=RH28 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.356e-13
Identity = 48/133 (36.09%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  244 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTA---LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            V  H+  F +  L   LLRA    G++ P+ +Q  CIP A+ G D+   A +G GKTA F L TL++    P +V A   L+L  TRELA QI H   +      DIK  +  GG++++  ++++    P IV
Sbjct:  162 VSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQI-HSMIQNLAQFTDIKCGLIVGGLSVR-EQEVVLRSMPDIV 292          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RH26_ORYSJ (DEAD-box ATP-dependent RNA helicase 26 OS=Oryza sativa subsp. japonica GN=Os01g0618500 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.356e-13
Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = 1
Query:  238 GYVGIHSSG--FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ--QTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI-KIHKDLLKNECPPIV 633
            G VG H S   F    + P  L+AI D+G+E  ++VQ   +P  + G DV+ +AK+G GKT  F+L  ++   T P    +  LV+C TRELA Q+  E  +   Y   + V V  GG  + +  + +  N C  +V
Sbjct:   65 GVVGSHLSETRFDQCPVSPLSLKAIKDAGYEKMTQVQEATLPIILQGEDVLAKAKTGTGKTVAFLLPAIELLSTLPRSPSINLLVICPTRELANQVAAEARKLLKYHRSLGVQVVIGGTKLPQEQRSMQSNPCQILV 201          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RH26_ARATH (DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana GN=RH26 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.356e-13
Identity = 50/150 (33.33%), Postives = 71/150 (47.33%), Query Frame = 1
Query:  211 KANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP--------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPPIV 633
            K  GE  K     +  + F  F L P  L+AI D+GFE  + VQ   +P  + G DV+ +AK+G GKT  F+L  ++    +P          +  LV+C TRELA Q   E      Y P I V V  GG  +   +  ++ N C  +V
Sbjct:  366 KPTGEHVKTSDSYLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILV 515          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_CANAL (ATP-dependent RNA helicase eIF4A OS=Candida albicans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.356e-13
Identity = 44/108 (40.74%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            F D  LKP ++R I   G+E PS +Q   I     G DV+ QA+SG GKTA F +S LQ+   N     AL+L  TRELA QI +       YL  + V    GG ++
Sbjct:   25 FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRINENEKATQALILAPTRELALQIKNVITAIGLYL-KVTVHASIGGTSM 131          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_CANAL (ATP-dependent RNA helicase FAL1 OS=Candida albicans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.356e-13
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            F    LKP+LL+ I   GFE PS +Q   I Q I G D I QA+SG GKTA F +  L+  +    +  AL+L  TRELA QI +  +    Y+ +I      GG N+
Sbjct:   28 FESMNLKPDLLKGIYAYGFETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYM-NIHTHACIGGKNV 134          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Schizaphis graminum GN=deaD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.356e-13
Identity = 47/128 (36.72%), Postives = 65/128 (50.78%), Query Frame = 1
Query:  253 HSSGFRDFL-LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            H+     FL L P +++++   G+  PS +Q  CIP  + G DV+  A++G GKTA F L  L     N      LVL  TRELA Q+   F  FS Y+  I V   YGG   ++    L+ + P IV
Sbjct:    3 HTESTFSFLGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRALR-QGPQIV 129          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_SCLS1 (ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13
Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = 1
Query:  256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            +  F+D  +   L  A    G++ P+ +Q E IP A+ G D+I  A++G GKTA F L  LQ     P  +  LVL  TRELAYQI   FE   + +  +K AV  GG+++
Sbjct:   55 TKSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQSLLDKPQPLFGLVLAPTRELAYQISQSFEALGSII-RVKCAVIVGGMDM 164          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_BOTFB (ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain B05.10) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13
Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            F+D  +   L  A    G++ P+ +Q E IP A+ G D+I  A++G GKTA F L  LQ     P  +  LVL  TRELAYQI  +FE   + +  +K AV  GG+++
Sbjct:   62 FKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQALLDKPQPLFGLVLAPTRELAYQISQQFEALGSVI-RVKCAVIVGGMDM 168          
The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
FAL1_VANPO2.570e-1340.65ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma... [more]
DDX47_DICDI2.570e-1338.32Probable ATP-dependent RNA helicase ddx47 OS=Dicty... [more]
RH28_ARATH3.356e-1336.09DEAD-box ATP-dependent RNA helicase 28 OS=Arabidop... [more]
RH26_ORYSJ3.356e-1334.31DEAD-box ATP-dependent RNA helicase 26 OS=Oryza sa... [more]
RH26_ARATH3.356e-1333.33DEAD-box ATP-dependent RNA helicase 26 OS=Arabidop... [more]
IF4A_CANAL3.356e-1340.74ATP-dependent RNA helicase eIF4A OS=Candida albica... [more]
FAL1_CANAL3.356e-1340.74ATP-dependent RNA helicase FAL1 OS=Candida albican... [more]
DEAD_BUCAP3.356e-1336.72Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
RRP3_SCLS14.383e-1338.74ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sc... [more]
RRP3_BOTFB4.383e-1339.81ATP-dependent rRNA helicase rrp3 OS=Botryotinia fu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bp
GAGGATTCTACTCCCTTTCAAATCTTTTTCTCCTTTTATTTTGGCTAATT
ATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCCCAAC
CGTTTATTCAAATACTGGCAGGAATGGGAGAGACAAGAGACAACGAGTAC
GAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGATTC
CGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTA
TACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGT
GCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATG
CATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAG
GGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAG
CCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTT
AGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTG
ATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAA
GATTTGCTGAAAAACGAATGTCCCCCAATTGTTG
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