CN181474
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_AJECN (ATP-dependent RNA helicase eIF4A OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=TIF1 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13 Identity = 43/104 (41.35%), Postives = 58/104 (55.77%), Query Frame = 1 Query: 280 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591 L+ ELLR + GFE PS +Q I I G DVI QA+SG GKTA F +S LQ+ + N AL+L TRELA QI ++ I+ GG++++ Sbjct: 32 LRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFM-SIECHACIGGISVR 134
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A3_ARATH (Eukaryotic initiation factor 4A-3 OS=Arabidopsis thaliana GN=TIF4A-3 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13 Identity = 53/147 (36.05%), Postives = 73/147 (49.66%), Query Frame = 1 Query: 193 PDSVATKANGEAAKKGYVGIHSS------GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 615 P TK N ++G +++ F L+P+LLR I GFE PS +Q I G+DVI QA+SG GKTA F LQQ + + Q ALVL TRELA QI YL +K GG +++ + +L++ Sbjct: 13 PRQFDTKMNAILGEEGEETFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKAQACVGGTSVREDQRVLQS 158
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_ASHGO (ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii GN=FAL1 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13 Identity = 44/103 (42.72%), Postives = 54/103 (52.43%), Query Frame = 1 Query: 256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 564 S F L+ LLR I GFE PS +Q I Q I G DVI QA+SG GKTA F + LQ + + + ALVL TRELA QI Y+ + +A Sbjct: 22 SPTFESMKLQENLLRGIYGYGFEAPSAIQSRAITQIIRGKDVIAQAQSGTGKTATFTIGMLQVIDSSSKDLQALVLSPTRELAAQISQVVRNLGDYMNVVALA 124
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: EXP9_STRR6 (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13 Identity = 47/117 (40.17%), Postives = 63/117 (53.85%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 615 F + L +LL I +GF S +Q + IP A+ G DVI QA++G GKTA F L TL++ + ALV+ TRELA Q E RF +KV YGG +I+ LK+ Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR-SKGVKVRSVYGGSSIEKQIKALKS 118
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: EXP9_STRPN (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae GN=exp9 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13 Identity = 47/117 (40.17%), Postives = 63/117 (53.85%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 615 F + L +LL I +GF S +Q + IP A+ G DVI QA++G GKTA F L TL++ + ALV+ TRELA Q E RF +KV YGG +I+ LK+ Sbjct: 3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR-SKGVKVRSVYGGSSIEKQIKALKS 118
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAI (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=deaD PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 5.724e-13 Identity = 44/118 (37.29%), Postives = 62/118 (52.54%), Query Frame = 1 Query: 280 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633 L P +++++ + G+ PS +Q CIP + G DV+ A++G GKTA F L L N LVL TRELA Q+ F FS Y+ I V YGG ++ L+ + P IV Sbjct: 13 LNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALR-QGPQIV 129
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DBP9_GIBZE (ATP-dependent RNA helicase DBP9 OS=Gibberella zeae GN=DBP9 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 5.724e-13 Identity = 50/131 (38.17%), Postives = 70/131 (53.44%), Query Frame = 1 Query: 259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL-----QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY-LPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633 + F D L P LL+AI F P+ VQ + IP A+ G DV+ +A G GKTA +VL L ++ + TAL+L TRELA Q+ E+F+++ DI A V+ K+ + LL N P IV Sbjct: 40 TSFVDLGLDPRLLQAIAQQKFAKPTLVQRKAIPLALNGQDVLAKADCGSGKTAAYVLPLLSSILKRKATDSTAFTTALILVPTRELADQVSKAIEQFASFCAKDISTAKLTDKVSSKVQRALLSNS-PDIV 169
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_EMENI (ATP-dependent rRNA helicase rrp3 OS=Emericella nidulans GN=rrp3 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.476e-13 Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 1 Query: 196 DSVATK--ANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 +SV+++ A E G + F++ + +L A + G++ P+ +Q + IP A+ G DVI A++G GKTA F L LQ P + LVL TRELAYQI FE + + ++ AV GG+++ Sbjct: 23 ESVSSRGSAKDETQTSGEEPAPAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEAPQTLFGLVLAPTRELAYQISQAFETLGSTI-GVRCAVIVGGMDM 154
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_ASPFU (ATP-dependent rRNA helicase rrp3 OS=Aspergillus fumigatus GN=rrp3 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.476e-13 Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 F+D + +L A G++ P+ +Q E IP A+ G D+I A++G GKTA F L LQ NP L+L TRELA+QI FE + + +++ AV GG+++ Sbjct: 54 FKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMENPQSFFGLILAPTRELAFQISKSFESLGSTI-NVRCAVIVGGMDM 160
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RH25_ORYSJ (DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sativa subsp. japonica GN=Os01g0618400 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.476e-13 Identity = 45/158 (28.48%), Postives = 77/158 (48.73%), Query Frame = 1 Query: 187 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG--------QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI-KIHKDLLKNECPPIV 633 +AP+ A K+ E+ + + F + P L+A+ D+G+E ++VQ +P + G DV+ +AK+G GKT F+L ++ P + LV+C TRELA Q+ E ++ Y + V V GG + + + + N C +V Sbjct: 102 EAPEFDAAKSGDESGGVDGSYLSDTRFDQCTISPLSLKAVKDAGYERMTQVQEATLPVILQGKDVLAKAKTGTGKTVAFLLPAIEVLSALPNSRRDQLRPSINLLVMCPTRELAIQVAVEAKKLLKYHRSLGVQVVIGGTRLTQEQRSMQANPCQILV 259 The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bpback to top |