CN181474

Overview
NameCN181474
Unique NameCN181474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_AJECN (ATP-dependent RNA helicase eIF4A OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13
Identity = 43/104 (41.35%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  280 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            L+ ELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ + N     AL+L  TRELA QI         ++  I+     GG++++
Sbjct:   32 LRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFM-SIECHACIGGISVR 134          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A3_ARATH (Eukaryotic initiation factor 4A-3 OS=Arabidopsis thaliana GN=TIF4A-3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13
Identity = 53/147 (36.05%), Postives = 73/147 (49.66%), Query Frame = 1
Query:  193 PDSVATKANGEAAKKGYVGIHSS------GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 615
            P    TK N    ++G    +++       F    L+P+LLR I   GFE PS +Q   I     G+DVI QA+SG GKTA F    LQQ + +  Q  ALVL  TRELA QI         YL  +K     GG +++  + +L++
Sbjct:   13 PRQFDTKMNAILGEEGEETFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKAQACVGGTSVREDQRVLQS 158          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_ASHGO (ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13
Identity = 44/103 (42.72%), Postives = 54/103 (52.43%), Query Frame = 1
Query:  256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 564
            S  F    L+  LLR I   GFE PS +Q   I Q I G DVI QA+SG GKTA F +  LQ  + +   + ALVL  TRELA QI         Y+  + +A
Sbjct:   22 SPTFESMKLQENLLRGIYGYGFEAPSAIQSRAITQIIRGKDVIAQAQSGTGKTATFTIGMLQVIDSSSKDLQALVLSPTRELAAQISQVVRNLGDYMNVVALA 124          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: EXP9_STRR6 (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13
Identity = 47/117 (40.17%), Postives = 63/117 (53.85%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 615
            F +  L  +LL  I  +GF   S +Q + IP A+ G DVI QA++G GKTA F L TL++       + ALV+  TRELA Q   E  RF      +KV   YGG +I+     LK+
Sbjct:    3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR-SKGVKVRSVYGGSSIEKQIKALKS 118          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: EXP9_STRPN (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae GN=exp9 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13
Identity = 47/117 (40.17%), Postives = 63/117 (53.85%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 615
            F +  L  +LL  I  +GF   S +Q + IP A+ G DVI QA++G GKTA F L TL++       + ALV+  TRELA Q   E  RF      +KV   YGG +I+     LK+
Sbjct:    3 FNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR-SKGVKVRSVYGGSSIEKQIKALKS 118          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAI (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=deaD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.724e-13
Identity = 44/118 (37.29%), Postives = 62/118 (52.54%), Query Frame = 1
Query:  280 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            L P +++++ + G+  PS +Q  CIP  + G DV+  A++G GKTA F L  L     N      LVL  TRELA Q+   F  FS Y+  I V   YGG   ++    L+ + P IV
Sbjct:   13 LNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALR-QGPQIV 129          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DBP9_GIBZE (ATP-dependent RNA helicase DBP9 OS=Gibberella zeae GN=DBP9 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.724e-13
Identity = 50/131 (38.17%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL-----QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY-LPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            + F D  L P LL+AI    F  P+ VQ + IP A+ G DV+ +A  G GKTA +VL  L     ++   +    TAL+L  TRELA Q+    E+F+++   DI  A     V+ K+ + LL N  P IV
Sbjct:   40 TSFVDLGLDPRLLQAIAQQKFAKPTLVQRKAIPLALNGQDVLAKADCGSGKTAAYVLPLLSSILKRKATDSTAFTTALILVPTRELADQVSKAIEQFASFCAKDISTAKLTDKVSSKVQRALLSNS-PDIV 169          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_EMENI (ATP-dependent rRNA helicase rrp3 OS=Emericella nidulans GN=rrp3 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.476e-13
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  196 DSVATK--ANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            +SV+++  A  E    G     +  F++  +  +L  A  + G++ P+ +Q + IP A+ G DVI  A++G GKTA F L  LQ     P  +  LVL  TRELAYQI   FE   + +  ++ AV  GG+++
Sbjct:   23 ESVSSRGSAKDETQTSGEEPAPAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEAPQTLFGLVLAPTRELAYQISQAFETLGSTI-GVRCAVIVGGMDM 154          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_ASPFU (ATP-dependent rRNA helicase rrp3 OS=Aspergillus fumigatus GN=rrp3 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.476e-13
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            F+D  +  +L  A    G++ P+ +Q E IP A+ G D+I  A++G GKTA F L  LQ    NP     L+L  TRELA+QI   FE   + + +++ AV  GG+++
Sbjct:   54 FKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMENPQSFFGLILAPTRELAFQISKSFESLGSTI-NVRCAVIVGGMDM 160          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RH25_ORYSJ (DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sativa subsp. japonica GN=Os01g0618400 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.476e-13
Identity = 45/158 (28.48%), Postives = 77/158 (48.73%), Query Frame = 1
Query:  187 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG--------QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI-KIHKDLLKNECPPIV 633
            +AP+  A K+  E+       +  + F    + P  L+A+ D+G+E  ++VQ   +P  + G DV+ +AK+G GKT  F+L  ++     P          +  LV+C TRELA Q+  E ++   Y   + V V  GG  + +  + +  N C  +V
Sbjct:  102 EAPEFDAAKSGDESGGVDGSYLSDTRFDQCTISPLSLKAVKDAGYERMTQVQEATLPVILQGKDVLAKAKTGTGKTVAFLLPAIEVLSALPNSRRDQLRPSINLLVMCPTRELAIQVAVEAKKLLKYHRSLGVQVVIGGTRLTQEQRSMQANPCQILV 259          
The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
IF4A_AJECN4.383e-1341.35ATP-dependent RNA helicase eIF4A OS=Ajellomyces ca... [more]
IF4A3_ARATH4.383e-1336.05Eukaryotic initiation factor 4A-3 OS=Arabidopsis t... [more]
FAL1_ASHGO4.383e-1342.72ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii... [more]
EXP9_STRR64.383e-1340.17Probable ATP-dependent RNA helicase exp9 OS=Strept... [more]
EXP9_STRPN4.383e-1340.17Probable ATP-dependent RNA helicase exp9 OS=Strept... [more]
DEAD_BUCAI5.724e-1337.29Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
DBP9_GIBZE5.724e-1338.17ATP-dependent RNA helicase DBP9 OS=Gibberella zeae... [more]
RRP3_EMENI7.476e-1334.59ATP-dependent rRNA helicase rrp3 OS=Emericella nid... [more]
RRP3_ASPFU7.476e-1337.96ATP-dependent rRNA helicase rrp3 OS=Aspergillus fu... [more]
RH25_ORYSJ7.476e-1328.48DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bp
GAGGATTCTACTCCCTTTCAAATCTTTTTCTCCTTTTATTTTGGCTAATT
ATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCCCAAC
CGTTTATTCAAATACTGGCAGGAATGGGAGAGACAAGAGACAACGAGTAC
GAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGATTC
CGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTA
TACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGT
GCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATG
CATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAG
GGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAG
CCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTT
AGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTG
ATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAA
GATTTGCTGAAAAACGAATGTCCCCCAATTGTTG
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