CN181474

Overview
NameCN181474
Unique NameCN181474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_WHEAT (Eukaryotic initiation factor 4A OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.476e-13
Identity = 51/123 (41.46%), Postives = 64/123 (52.03%), Query Frame = 1
Query:  241 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 609
            Y  +H S F D  L+  LLR I   GFE PS +Q   I     G+DVI QA+SG GKTA F    LQQ +    +  ALVL  TRELA QI         YL  +KV    GG +++  + +L
Sbjct:   36 YDEVHES-FDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL 156          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_COCIM (ATP-dependent RNA helicase FAL1 OS=Coccidioides immitis GN=FAL1 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.476e-13
Identity = 46/108 (42.59%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            F D  LK  LLR I   GFE PS +Q   I Q   G D I QA+SG GKTA F +S LQ  +    +  ALVL  TRELA QI +       Y+ +++     GG N+
Sbjct:   27 FDDMHLKENLLRGIYAYGFESPSAIQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQVIDTALRETQALVLSPTRELATQIQNVIMAVGDYM-NVQCHACIGGTNV 133          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A1_ORYSJ (Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica GN=Os06g0701100 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.764e-13
Identity = 51/123 (41.46%), Postives = 64/123 (52.03%), Query Frame = 1
Query:  241 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 609
            Y  +H S F D  L+  LLR I   GFE PS +Q   I     G+DVI QA+SG GKTA F    LQQ +    +  ALVL  TRELA QI         YL  +KV    GG +++  + +L
Sbjct:   36 YDEVHES-FDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYAVVECQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL 156          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_EMENI (ATP-dependent RNA helicase fal1 OS=Emericella nidulans GN=fal1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.764e-13
Identity = 47/108 (43.52%), Postives = 56/108 (51.85%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            F D  LK  LLR I   G+E PS VQ   I Q   G D I QA+SG GKTA F +S LQ  +    +  ALVL  TRELA QI         Y+ +++     GG NI
Sbjct:   27 FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISALQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYM-NVQCHACIGGTNI 133          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_ASPCL (ATP-dependent RNA helicase fal1 OS=Aspergillus clavatus GN=fal1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.764e-13
Identity = 47/108 (43.52%), Postives = 56/108 (51.85%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            F D  LK  LLR I   G+E PS VQ   I Q   G D I QA+SG GKTA F +S LQ  +    +  ALVL  TRELA QI         Y+ +++     GG NI
Sbjct:   27 FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTAVRETQALVLSPTRELATQIQSVIMALGDYM-NVQCHACIGGTNI 133          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RHLE_ECOLI (ATP-dependent RNA helicase rhlE OS=Escherichia coli (strain K12) GN=rhlE PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.275e-12
Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = 1
Query:  280 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ---TEPNP---GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            L P++LRA+ + G+  P+ +Q + IP  + G D++  A++G GKTA F L  LQ     +P+      V AL+L  TRELA QI      +S YL +I+  V +GGV+I
Sbjct:    8 LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSI 115          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A3_TAEGU (Eukaryotic initiation factor 4A-III OS=Taeniopygia guttata GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.275e-12
Identity = 43/103 (41.75%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  280 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            L+ +LLR I   GFE PS +Q   I Q I G DVI Q++SG GKTA F +S LQ  +    +  AL+L  TRELA QI         Y+ +++     GG N+
Sbjct:   44 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNV 145          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A3_RAT (Eukaryotic initiation factor 4A-III OS=Rattus norvegicus GN=Eif4a3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.275e-12
Identity = 43/103 (41.75%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  280 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            L+ +LLR I   GFE PS +Q   I Q I G DVI Q++SG GKTA F +S LQ  +    +  AL+L  TRELA QI         Y+ +++     GG N+
Sbjct:   45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNV 146          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A3_PIG (Eukaryotic initiation factor 4A-III OS=Sus scrofa GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.275e-12
Identity = 43/103 (41.75%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  280 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            L+ +LLR I   GFE PS +Q   I Q I G DVI Q++SG GKTA F +S LQ  +    +  AL+L  TRELA QI         Y+ +++     GG N+
Sbjct:   45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNV 146          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A3_HUMAN (Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4)

HSP 1 Score: 73.1738 bits (178), Expect = 1.275e-12
Identity = 43/103 (41.75%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  280 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            L+ +LLR I   GFE PS +Q   I Q I G DVI Q++SG GKTA F +S LQ  +    +  AL+L  TRELA QI         Y+ +++     GG N+
Sbjct:   45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNV 146          
The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
IF4A_WHEAT7.476e-1341.46Eukaryotic initiation factor 4A OS=Triticum aestiv... [more]
FAL1_COCIM7.476e-1342.59ATP-dependent RNA helicase FAL1 OS=Coccidioides im... [more]
IF4A1_ORYSJ9.764e-1341.46Eukaryotic initiation factor 4A-1 OS=Oryza sativa ... [more]
FAL1_EMENI9.764e-1343.52ATP-dependent RNA helicase fal1 OS=Emericella nidu... [more]
FAL1_ASPCL9.764e-1343.52ATP-dependent RNA helicase fal1 OS=Aspergillus cla... [more]
RHLE_ECOLI1.275e-1239.45ATP-dependent RNA helicase rhlE OS=Escherichia col... [more]
IF4A3_TAEGU1.275e-1241.75Eukaryotic initiation factor 4A-III OS=Taeniopygia... [more]
IF4A3_RAT1.275e-1241.75Eukaryotic initiation factor 4A-III OS=Rattus norv... [more]
IF4A3_PIG1.275e-1241.75Eukaryotic initiation factor 4A-III OS=Sus scrofa ... [more]
IF4A3_HUMAN1.275e-1241.75Eukaryotic initiation factor 4A-III OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bp
GAGGATTCTACTCCCTTTCAAATCTTTTTCTCCTTTTATTTTGGCTAATT
ATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCCCAAC
CGTTTATTCAAATACTGGCAGGAATGGGAGAGACAAGAGACAACGAGTAC
GAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGATTC
CGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTA
TACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGT
GCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATG
CATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAG
GGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAG
CCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTT
AGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTG
ATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAA
GATTTGCTGAAAAACGAATGTCCCCCAATTGTTG
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