CN181474

Overview
NameCN181474
Unique NameCN181474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_YARLI (ATP-dependent RNA helicase FAL1 OS=Yarrowia lipolytica GN=FAL1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.846e-12
Identity = 43/110 (39.09%), Postives = 58/110 (52.73%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKI 594
            F    LK +LLR I   GFE PS +Q   I Q I G D I QA+SG GKTA F +S L+  +    +  A+VL  TRELA QI         Y+ +++     GG ++ +
Sbjct:   26 FESMDLKDDLLRGIYAYGFEAPSAIQSRAITQIIKGRDTIAQAQSGTGKTATFSISMLEVIDTKHRETQAMVLSPTRELATQIQSVILALGDYM-NVQCHACIGGTSLSV 134          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_NEUCR (ATP-dependent RNA helicase fal-1 OS=Neurospora crassa GN=fal-1 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.846e-12
Identity = 47/115 (40.87%), Postives = 59/115 (51.30%), Query Frame = 1
Query:  244 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            V +H + F    LK  LLR I   G+E PS VQ   I Q   G D I QA+SG GKTA F +S LQ  +    +  ALVL  TRELA QI         Y+ +++     GG N+
Sbjct:   22 VTVHPT-FESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYM-NVQCHACIGGTNV 134          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_CHAGB (ATP-dependent RNA helicase FAL1 OS=Chaetomium globosum GN=FAL1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.846e-12
Identity = 47/115 (40.87%), Postives = 59/115 (51.30%), Query Frame = 1
Query:  244 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            V +H + F    LK  LLR I   G+E PS VQ   I Q   G D I QA+SG GKTA F +S LQ  +    +  ALVL  TRELA QI         Y+ +++     GG N+
Sbjct:   23 VTVHPT-FESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYM-NVQCHACIGGTNV 135          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DRS1_ASPTN (ATP-dependent RNA helicase drs1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=drs1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.846e-12
Identity = 46/151 (30.46%), Postives = 77/151 (50.99%), Query Frame = 1
Query:  190 APDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQV---TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            AP+   TK   + A++         F++F L   +LR +    F +P+ +Q + IP A+LG D++  A +G GKTA FV+  L++    P +V      +L  TRELA Q  +   + +TY  DI      GG +++  +++LK     I+
Sbjct:  289 APEEEKTKEQADGAQRS--------FQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATY-TDITFCQLVGGFSLREQENILKKRPDVII 430          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: CSHA_BACSU (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus subtilis GN=cshA PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.846e-12
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            F+DF L  +L++AI   GFE  + +Q + IP  +   DVI QA++G GKTA F +  +++  P    + A+V+  TRELA Q+  E  +        KV   YGG +I
Sbjct:    5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQD-KRAKVLPIYGGQDI 111          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A3_ORYSJ (Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica GN=Os02g0146600 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.329e-12
Identity = 47/115 (40.87%), Postives = 60/115 (52.17%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 609
            F D  L+  LLR I   GFE PS +Q   I     G+DVI QA+SG GKTA F    LQQ +    +  +LVL  TRELA QI         YL  +KV    GG +++  + +L
Sbjct:   43 FDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQSLVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL 156          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF411_TOBAC (Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.329e-12
Identity = 46/112 (41.07%), Postives = 61/112 (54.46%), Query Frame = 1
Query:  280 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 615
            L+  LLR I   GFE PS +Q   I     G+DVI QA+SG GKTA F    LQQ + +  +  ALVL  TRELA QI         YL  +KV    GG +++  + +L++
Sbjct:   47 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQS 157          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_SCHPO (ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces pombe GN=tif412 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.329e-12
Identity = 41/85 (48.24%), Postives = 49/85 (57.65%), Query Frame = 1
Query:  259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 513
            S F +  LK +LLR I   G+E PS VQ   I Q   G DVI QA+SG GKTA F +  LQ  + +     AL+L  TRELA QI
Sbjct:   21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQI 105          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_YARLI (ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica GN=RRP3 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            F+D  +   +     +  F  P+ +Q + IP A+ G D+I  A++G GKTA F +  LQ    NP  +  +VL  TRELAYQI   FE   + +  ++ AV  GG+N+
Sbjct:   66 FKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLYENPQPLYCVVLAPTRELAYQISETFEALGSAM-GLRTAVVVGGMNM 172          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_ASPCL (ATP-dependent rRNA helicase rrp3 OS=Aspergillus clavatus GN=rrp3 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            F+D  +  +L  A    G++ P+ +Q E IP A+   D+I  A++G GKTA F L  LQ     P     LVL  TRELA+QI   FE   + + +++ AV  GG+++
Sbjct:   55 FKDLGIIDQLCEACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKTAAFALPILQALMDKPQSFFGLVLAPTRELAFQISQSFEALGSTI-NVRCAVIVGGMDM 161          
The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
FAL1_YARLI4.846e-1239.09ATP-dependent RNA helicase FAL1 OS=Yarrowia lipoly... [more]
FAL1_NEUCR4.846e-1240.87ATP-dependent RNA helicase fal-1 OS=Neurospora cra... [more]
FAL1_CHAGB4.846e-1240.87ATP-dependent RNA helicase FAL1 OS=Chaetomium glob... [more]
DRS1_ASPTN4.846e-1230.46ATP-dependent RNA helicase drs1 OS=Aspergillus ter... [more]
CSHA_BACSU4.846e-1237.04DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
IF4A3_ORYSJ6.329e-1240.87Eukaryotic initiation factor 4A-3 OS=Oryza sativa ... [more]
IF411_TOBAC6.329e-1241.07Eukaryotic initiation factor 4A-11 OS=Nicotiana ta... [more]
FAL1_SCHPO6.329e-1248.24ATP-dependent RNA helicase fal1 OS=Schizosaccharom... [more]
RRP3_YARLI8.266e-1236.11ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipol... [more]
RRP3_ASPCL8.266e-1237.04ATP-dependent rRNA helicase rrp3 OS=Aspergillus cl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bp
GAGGATTCTACTCCCTTTCAAATCTTTTTCTCCTTTTATTTTGGCTAATT
ATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCCCAAC
CGTTTATTCAAATACTGGCAGGAATGGGAGAGACAAGAGACAACGAGTAC
GAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGATTC
CGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTA
TACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGT
GCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATG
CATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAG
GGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAG
CCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTT
AGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTG
ATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAA
GATTTGCTGAAAAACGAATGTCCCCCAATTGTTG
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