CN181474
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A9_TOBAC (Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12 Identity = 47/112 (41.96%), Postives = 58/112 (51.79%), Query Frame = 1 Query: 280 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 615 LK LLR I GFE PS +Q I G+DVI QA+SG GKTA F LQQ + ALVL TRELA QI YL +KV GG +++ + +L + Sbjct: 47 LKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYELLDCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILSS 157
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX27_HUMAN (Probable ATP-dependent RNA helicase DDX27 OS=Homo sapiens GN=DDX27 PE=1 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12 Identity = 44/119 (36.97%), Postives = 63/119 (52.94%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQT--EPNPGQVT-ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612 F+D L LL+AI GF+ P+ +Q CIP +LG D+ A +G GKTA F L L++ +P VT LVL TREL Q+ H R +I + GG+++K + L+ Sbjct: 220 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQV-HSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: CGH1_CAEEL (ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis elegans GN=cgh-1 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12 Identity = 37/109 (33.94%), Postives = 61/109 (55.96%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591 F DF L +LL I + G+E PS +Q I A+ G D++ +AK+G GKT + + +++ +P + A+V+ TRELA Q S ++ +KV V GG +++ Sbjct: 45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQICVELSKHI-QLKVMVTTGGTDLR 152
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_ASPNC (ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rrp3 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11 Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 1 Query: 256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 S F++ + +L A G++ P+ +Q E IP A+ G D+I A++G GKTA F L LQ P LVL TRELAYQI FE + ++ V GG+++ Sbjct: 47 SKTFKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKPQPFFGLVLAPTRELAYQISKSFESLGASM-GVRSCVIVGGMDM 156
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RH2_ARATH (DEAD-box ATP-dependent RNA helicase 2 OS=Arabidopsis thaliana GN=RH2 PE=2 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11 Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 1 Query: 259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 510 + F D +K ++LR + + GFE PS +Q + + G DVI QA+SG GKT++ LS Q + + +V AL+L TRELA Q Sbjct: 35 TSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQ 118
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_ENCCU (ATP-dependent RNA helicase eIF4A OS=Encephalitozoon cuniculi GN=TIF1 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11 Identity = 53/157 (33.76%), Postives = 78/157 (49.68%), Query Frame = 1 Query: 187 QAPDSVATKANGEAAKKGYVGIHSSG--------FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633 QA D V T+++G ++ + + S + D+ LK +LL+ I GFE PS +Q I I G D+ QA+SG GKT F ++ LQ + + LVL TRE+A Q FE ++ +VA+ GG I K L+ + P IV Sbjct: 7 QAEDFVDTRSSGTEIRE-FEDLRSDSSQIRMFDTWEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQICDMSQDVTQILVLASTREIAAQNAARFEDLGCFM-GARVALLSGGSPIAADKVALEKK-PHIV 160
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF415_TOBAC (Eukaryotic initiation factor 4A-15 OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11 Identity = 51/134 (38.06%), Postives = 67/134 (50.00%), Query Frame = 1 Query: 214 ANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 615 A+G+ Y ++ S F L+ LLR I GFE PS +Q I G+DVI QA+SG GKTA F LQQ + ALVL TRELA QI YL +KV GG +++ + +L + Sbjct: 26 ADGQDFFTSYDEVYDS-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLAYELLECQALVLAPTRELAQQIEKVMRALGDYL-GVKVTACVGGTSVREDQRILSS 157
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_DEBHA (ATP-dependent RNA helicase FAL1 OS=Debaryomyces hansenii GN=FAL1 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11 Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 1 Query: 244 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 + +H++ F LK +LL+ I GFE PS +Q I Q I G D I QA+SG GKTA F + L+ + AL+L TRELA QI + Y+ ++ GG ++ Sbjct: 22 IKVHAT-FESMNLKTDLLKGIYGYGFEAPSAIQSRAIMQIISGKDTIAQAQSGTGKTATFSIGMLEVIDTKSKDCQALILSPTRELAQQIQSVVKHLGDYM-NVHTHACIGGTHV 134
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DRS1_PICGU (ATP-dependent RNA helicase DRS1 OS=Pichia guilliermondii GN=DRS1 PE=3 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11 Identity = 39/128 (30.47%), Postives = 72/128 (56.25%), Query Frame = 1 Query: 259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTA---LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633 + F+ L LL+ + + G+ PS +Q IP A++G D++ A +G GKTA +++ +++ P V+A +VL TRELA Q+C ++ ++ ++ + GG+N++ + LK+ P IV Sbjct: 198 TSFQALQLSRPLLKGVGNLGYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIERLIYKPAAVSATRVIVLTPTRELAIQVCDVGKKLGQFVANLNFGLAVGGLNLRQQEQQLKSR-PDIV 324
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DD19A_HUMAN (ATP-dependent RNA helicase DDX19A OS=Homo sapiens GN=DDX19A PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11 Identity = 37/102 (36.27%), Postives = 57/102 (55.88%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 564 F + LKP+LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L + EP+ L L T ELA Q E+ + P++K+A Sbjct: 93 FEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLA 194 The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bpback to top |