CN181474

Overview
NameCN181474
Unique NameCN181474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A9_TOBAC (Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 47/112 (41.96%), Postives = 58/112 (51.79%), Query Frame = 1
Query:  280 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 615
            LK  LLR I   GFE PS +Q   I     G+DVI QA+SG GKTA F    LQQ +       ALVL  TRELA QI         YL  +KV    GG +++  + +L +
Sbjct:   47 LKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYELLDCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILSS 157          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX27_HUMAN (Probable ATP-dependent RNA helicase DDX27 OS=Homo sapiens GN=DDX27 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 44/119 (36.97%), Postives = 63/119 (52.94%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQT--EPNPGQVT-ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612
            F+D  L   LL+AI   GF+ P+ +Q  CIP  +LG D+   A +G GKTA F L  L++   +P    VT  LVL  TREL  Q+ H   R      +I   +  GG+++K  +  L+
Sbjct:  220 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQV-HSVTRQLAQFCNITTCLAVGGLDVKSQEAALR 337          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: CGH1_CAEEL (ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis elegans GN=cgh-1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 37/109 (33.94%), Postives = 61/109 (55.96%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            F DF L  +LL  I + G+E PS +Q   I  A+ G D++ +AK+G GKT  + +  +++ +P    + A+V+  TRELA Q        S ++  +KV V  GG +++
Sbjct:   45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQICVELSKHI-QLKVMVTTGGTDLR 152          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_ASPNC (ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            S  F++  +  +L  A    G++ P+ +Q E IP A+ G D+I  A++G GKTA F L  LQ     P     LVL  TRELAYQI   FE     +  ++  V  GG+++
Sbjct:   47 SKTFKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKPQPFFGLVLAPTRELAYQISKSFESLGASM-GVRSCVIVGGMDM 156          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RH2_ARATH (DEAD-box ATP-dependent RNA helicase 2 OS=Arabidopsis thaliana GN=RH2 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 510
            + F D  +K ++LR + + GFE PS +Q   +   + G DVI QA+SG GKT++  LS  Q  + +  +V AL+L  TRELA Q
Sbjct:   35 TSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQ 118          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_ENCCU (ATP-dependent RNA helicase eIF4A OS=Encephalitozoon cuniculi GN=TIF1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11
Identity = 53/157 (33.76%), Postives = 78/157 (49.68%), Query Frame = 1
Query:  187 QAPDSVATKANGEAAKKGYVGIHSSG--------FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            QA D V T+++G   ++ +  + S          + D+ LK +LL+ I   GFE PS +Q   I   I G D+  QA+SG GKT  F ++ LQ  + +      LVL  TRE+A Q    FE    ++   +VA+  GG  I   K  L+ + P IV
Sbjct:    7 QAEDFVDTRSSGTEIRE-FEDLRSDSSQIRMFDTWEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQICDMSQDVTQILVLASTREIAAQNAARFEDLGCFM-GARVALLSGGSPIAADKVALEKK-PHIV 160          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF415_TOBAC (Eukaryotic initiation factor 4A-15 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11
Identity = 51/134 (38.06%), Postives = 67/134 (50.00%), Query Frame = 1
Query:  214 ANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 615
            A+G+     Y  ++ S F    L+  LLR I   GFE PS +Q   I     G+DVI QA+SG GKTA F    LQQ      +  ALVL  TRELA QI         YL  +KV    GG +++  + +L +
Sbjct:   26 ADGQDFFTSYDEVYDS-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLAYELLECQALVLAPTRELAQQIEKVMRALGDYL-GVKVTACVGGTSVREDQRILSS 157          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_DEBHA (ATP-dependent RNA helicase FAL1 OS=Debaryomyces hansenii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 1
Query:  244 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            + +H++ F    LK +LL+ I   GFE PS +Q   I Q I G D I QA+SG GKTA F +  L+  +       AL+L  TRELA QI    +    Y+ ++      GG ++
Sbjct:   22 IKVHAT-FESMNLKTDLLKGIYGYGFEAPSAIQSRAIMQIISGKDTIAQAQSGTGKTATFSIGMLEVIDTKSKDCQALILSPTRELAQQIQSVVKHLGDYM-NVHTHACIGGTHV 134          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DRS1_PICGU (ATP-dependent RNA helicase DRS1 OS=Pichia guilliermondii GN=DRS1 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11
Identity = 39/128 (30.47%), Postives = 72/128 (56.25%), Query Frame = 1
Query:  259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTA---LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            + F+   L   LL+ + + G+  PS +Q   IP A++G D++  A +G GKTA +++  +++    P  V+A   +VL  TRELA Q+C   ++   ++ ++   +  GG+N++  +  LK+  P IV
Sbjct:  198 TSFQALQLSRPLLKGVGNLGYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIERLIYKPAAVSATRVIVLTPTRELAIQVCDVGKKLGQFVANLNFGLAVGGLNLRQQEQQLKSR-PDIV 324          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DD19A_HUMAN (ATP-dependent RNA helicase DDX19A OS=Homo sapiens GN=DDX19A PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11
Identity = 37/102 (36.27%), Postives = 57/102 (55.88%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 564
            F +  LKP+LL+ +   GF  PS++Q   +P  +     ++I Q++SG GKTA FVL+ L + EP+      L L  T ELA Q     E+   + P++K+A
Sbjct:   93 FEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLA 194          
The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
IF4A9_TOBAC8.266e-1241.96Eukaryotic initiation factor 4A-9 OS=Nicotiana tab... [more]
DDX27_HUMAN8.266e-1236.97Probable ATP-dependent RNA helicase DDX27 OS=Homo ... [more]
CGH1_CAEEL8.266e-1233.94ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis... [more]
RRP3_ASPNC1.080e-1136.94ATP-dependent rRNA helicase rrp3 OS=Aspergillus ni... [more]
RH2_ARATH1.080e-1141.67DEAD-box ATP-dependent RNA helicase 2 OS=Arabidops... [more]
IF4A_ENCCU1.080e-1133.76ATP-dependent RNA helicase eIF4A OS=Encephalitozoo... [more]
IF415_TOBAC1.080e-1138.06Eukaryotic initiation factor 4A-15 OS=Nicotiana ta... [more]
FAL1_DEBHA1.080e-1136.52ATP-dependent RNA helicase FAL1 OS=Debaryomyces ha... [more]
DRS1_PICGU1.080e-1130.47ATP-dependent RNA helicase DRS1 OS=Pichia guillier... [more]
DD19A_HUMAN1.080e-1136.27ATP-dependent RNA helicase DDX19A OS=Homo sapiens ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001A02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bp
GAGGATTCTACTCCCTTTCAAATCTTTTTCTCCTTTTATTTTGGCTAATT
ATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCCCAAC
CGTTTATTCAAATACTGGCAGGAATGGGAGAGACAAGAGACAACGAGTAC
GAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGATTC
CGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTA
TACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGT
GCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATG
CATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAG
GGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAG
CCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTT
AGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTG
ATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAA
GATTTGCTGAAAAACGAATGTCCCCCAATTGTTG
back to top