CN181474
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: CSHA_BACLD (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=cshA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11 Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 F+DF L +L +AI GFE + +Q + IP + DVI QA++G GKTA F + +++ P + A+V+ TRELA Q+ E + +V YGG +I Sbjct: 5 FQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQD-KRARVLPIYGGQDI 111
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_DEBHA (ATP-dependent rRNA helicase RRP3 OS=Debaryomyces hansenii GN=RRP3 PE=3 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11 Identity = 43/116 (37.07%), Postives = 59/116 (50.86%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612 F + L PELL AI F P+ +Q E IP A+ G D+I A++G GKTA F + LQ LVL TRELAYQI F+ + + V + G + +DL++ Sbjct: 67 FNELKLIPELLEAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQALWEAQAAYYGLVLAPTRELAYQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMR 182
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_MAIZE (Eukaryotic initiation factor 4A OS=Zea mays PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11 Identity = 46/110 (41.82%), Postives = 58/110 (52.73%), Query Frame = 1 Query: 280 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 609 L+ LLR I GFE PS +Q I G+DVI QA+SG GKTA F LQQ + + ALVL TRELA QI YL +KV GG +++ + +L Sbjct: 44 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL 152
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A2_ARATH (Eukaryotic initiation factor 4A-2 OS=Arabidopsis thaliana GN=TIF4A-2 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11 Identity = 50/124 (40.32%), Postives = 63/124 (50.81%), Query Frame = 1 Query: 241 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612 Y +H S F L+ LLR I GFE PS +Q I G+DVI QA+SG GKTA F LQQ + Q ALVL TRELA QI Y +KV GG +++ + +L+ Sbjct: 34 YDEVHES-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDY-QGVKVHACVGGTSVREDQRILQ 155
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_USTMA (ATP-dependent RNA helicase FAL1 OS=Ustilago maydis GN=FAL1 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11 Identity = 44/103 (42.72%), Postives = 55/103 (53.40%), Query Frame = 1 Query: 280 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 LK +LLR I FE PS +Q I I G DVI QA+SG GKTA F +S LQ + + ALVL TRELA QI YL +++ GG ++ Sbjct: 31 LKEDLLRGIYAYNFEKPSAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTTLRETQALVLSPTRELAIQIQSVVLALGDYL-NVQCHACIGGTSV 132
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX49_MOUSE (Probable ATP-dependent RNA helicase DDX49 OS=Mus musculus GN=Ddx49 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11 Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 1 Query: 259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 +GF + L L+ G + P+ VQ CIP + G D + AK+G GKTA FVL LQ+ +P + LVL TRELAYQI +F L +K + GG+++ Sbjct: 2 AGFAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPL-GLKDCIIVGGMDM 110
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX49_HUMAN (Probable ATP-dependent RNA helicase DDX49 OS=Homo sapiens GN=DDX49 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11 Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 1 Query: 259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 +GF + L L+ G + P+ VQ CIP + G D + AK+G GKTA FVL LQ+ +P + LVL TRELAYQI +F L +K + GG+++ Sbjct: 2 AGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPL-GLKDCIIVGGMDM 110
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX47_MOUSE (Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus GN=Ddx47 PE=2 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11 Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN 585 F+D + L A G+ P+++Q E IP A+ G D+I A++G GKT F L L P ++ ALVL TRELA+QI +FE + + ++ AV GG++ Sbjct: 26 FKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQCAVIVGGID 131
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX47_BOVIN (Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11 Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN 585 F+D + L A G+ P+++Q E IP A+ G D+I A++G GKT F L L P ++ ALVL TRELA+QI +FE + + ++ AV GG++ Sbjct: 28 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQCAVIVGGID 133
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX27_MOUSE (Probable ATP-dependent RNA helicase DDX27 OS=Mus musculus GN=Ddx27 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11 Identity = 43/122 (35.25%), Postives = 61/122 (50.00%), Query Frame = 1 Query: 256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVT---ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612 S F+D L LL+AI GF+ P+ +Q CIP +LG D+ A +G GKTA F L L++ P Q LVL TREL Q+ H + I + GG+++K + L+ Sbjct: 183 SLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAAVTRVLVLVPTRELGIQV-HSVTKQLAQFCSITTCLAVGGLDVKSQEAALR 303 The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bpback to top |