CN181474

Overview
NameCN181474
Unique NameCN181474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: CSHA_BACLD (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=cshA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11
Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            F+DF L  +L +AI   GFE  + +Q + IP  +   DVI QA++G GKTA F +  +++  P    + A+V+  TRELA Q+  E  +        +V   YGG +I
Sbjct:    5 FQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQD-KRARVLPIYGGQDI 111          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_DEBHA (ATP-dependent rRNA helicase RRP3 OS=Debaryomyces hansenii GN=RRP3 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11
Identity = 43/116 (37.07%), Postives = 59/116 (50.86%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612
            F +  L PELL AI    F  P+ +Q E IP A+ G D+I  A++G GKTA F +  LQ           LVL  TRELAYQI   F+   + +    V +  G   +   +DL++
Sbjct:   67 FNELKLIPELLEAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQALWEAQAAYYGLVLAPTRELAYQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMR 182          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_MAIZE (Eukaryotic initiation factor 4A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11
Identity = 46/110 (41.82%), Postives = 58/110 (52.73%), Query Frame = 1
Query:  280 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 609
            L+  LLR I   GFE PS +Q   I     G+DVI QA+SG GKTA F    LQQ +    +  ALVL  TRELA QI         YL  +KV    GG +++  + +L
Sbjct:   44 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL 152          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A2_ARATH (Eukaryotic initiation factor 4A-2 OS=Arabidopsis thaliana GN=TIF4A-2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11
Identity = 50/124 (40.32%), Postives = 63/124 (50.81%), Query Frame = 1
Query:  241 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612
            Y  +H S F    L+  LLR I   GFE PS +Q   I     G+DVI QA+SG GKTA F    LQQ +    Q  ALVL  TRELA QI         Y   +KV    GG +++  + +L+
Sbjct:   34 YDEVHES-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDY-QGVKVHACVGGTSVREDQRILQ 155          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: FAL1_USTMA (ATP-dependent RNA helicase FAL1 OS=Ustilago maydis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11
Identity = 44/103 (42.72%), Postives = 55/103 (53.40%), Query Frame = 1
Query:  280 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            LK +LLR I    FE PS +Q   I   I G DVI QA+SG GKTA F +S LQ  +    +  ALVL  TRELA QI         YL +++     GG ++
Sbjct:   31 LKEDLLRGIYAYNFEKPSAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTTLRETQALVLSPTRELAIQIQSVVLALGDYL-NVQCHACIGGTSV 132          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX49_MOUSE (Probable ATP-dependent RNA helicase DDX49 OS=Mus musculus GN=Ddx49 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 1
Query:  259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            +GF +  L   L+      G + P+ VQ  CIP  + G D +  AK+G GKTA FVL  LQ+   +P  +  LVL  TRELAYQI  +F      L  +K  +  GG+++
Sbjct:    2 AGFAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPL-GLKDCIIVGGMDM 110          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX49_HUMAN (Probable ATP-dependent RNA helicase DDX49 OS=Homo sapiens GN=DDX49 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 1
Query:  259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            +GF +  L   L+      G + P+ VQ  CIP  + G D +  AK+G GKTA FVL  LQ+   +P  +  LVL  TRELAYQI  +F      L  +K  +  GG+++
Sbjct:    2 AGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPL-GLKDCIIVGGMDM 110          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX47_MOUSE (Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus GN=Ddx47 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN 585
            F+D  +   L  A    G+  P+++Q E IP A+ G D+I  A++G GKT  F L  L      P ++ ALVL  TRELA+QI  +FE   + +  ++ AV  GG++
Sbjct:   26 FKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQCAVIVGGID 131          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX47_BOVIN (Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN 585
            F+D  +   L  A    G+  P+++Q E IP A+ G D+I  A++G GKT  F L  L      P ++ ALVL  TRELA+QI  +FE   + +  ++ AV  GG++
Sbjct:   28 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQCAVIVGGID 133          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX27_MOUSE (Probable ATP-dependent RNA helicase DDX27 OS=Mus musculus GN=Ddx27 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11
Identity = 43/122 (35.25%), Postives = 61/122 (50.00%), Query Frame = 1
Query:  256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVT---ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612
            S  F+D  L   LL+AI   GF+ P+ +Q  CIP  +LG D+   A +G GKTA F L  L++    P Q      LVL  TREL  Q+ H   +       I   +  GG+++K  +  L+
Sbjct:  183 SLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAAVTRVLVLVPTRELGIQV-HSVTKQLAQFCSITTCLAVGGLDVKSQEAALR 303          
The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
CSHA_BACLD1.080e-1136.11DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
RRP3_DEBHA1.410e-1137.07ATP-dependent rRNA helicase RRP3 OS=Debaryomyces h... [more]
IF4A_MAIZE1.410e-1141.82Eukaryotic initiation factor 4A OS=Zea mays PE=2 S... [more]
IF4A2_ARATH1.410e-1140.32Eukaryotic initiation factor 4A-2 OS=Arabidopsis t... [more]
FAL1_USTMA1.410e-1142.72ATP-dependent RNA helicase FAL1 OS=Ustilago maydis... [more]
DDX49_MOUSE1.410e-1138.18Probable ATP-dependent RNA helicase DDX49 OS=Mus m... [more]
DDX49_HUMAN1.410e-1138.18Probable ATP-dependent RNA helicase DDX49 OS=Homo ... [more]
DDX47_MOUSE1.410e-1137.38Probable ATP-dependent RNA helicase DDX47 OS=Mus m... [more]
DDX47_BOVIN1.410e-1137.38Probable ATP-dependent RNA helicase DDX47 OS=Bos t... [more]
DDX27_MOUSE1.410e-1135.25Probable ATP-dependent RNA helicase DDX27 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bp
GAGGATTCTACTCCCTTTCAAATCTTTTTCTCCTTTTATTTTGGCTAATT
ATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCCCAAC
CGTTTATTCAAATACTGGCAGGAATGGGAGAGACAAGAGACAACGAGTAC
GAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGATTC
CGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTA
TACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGT
GCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATG
CATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAG
GGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAG
CCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTT
AGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTG
ATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAA
GATTTGCTGAAAAACGAATGTCCCCCAATTGTTG
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