CN181474
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_PICST (ATP-dependent rRNA helicase RRP3 OS=Pichia stipitis GN=RRP3 PE=3 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11 Identity = 41/110 (37.27%), Postives = 57/110 (51.82%), Query Frame = 1 Query: 259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 S F + L PELL AI F P+ +Q E IP A+ G D+I A++G GKTA F + LQ LVL RELAYQI F+ + + ++ GG+++ Sbjct: 71 STFSELKLVPELLEAIQQMKFSKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQTPYFGLVLAPARELAYQIKETFDALGSTM-GVRTVCLVGGMDM 179
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_AJECN (ATP-dependent rRNA helicase RRP3 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RRP3 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11 Identity = 41/111 (36.94%), Postives = 60/111 (54.05%), Query Frame = 1 Query: 256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 + F+D + L A G++ P+ +Q E IP A+ G D+I A++G GKTA F L LQ P + L+L TRELA QI FE + L ++ AV GG+++ Sbjct: 58 TKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMNKPQSLFGLILAPTRELACQISEAFEALGS-LISVRCAVIVGGMDM 167
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RHLB_PSESM (ATP-dependent RNA helicase rhlB OS=Pseudomonas syringae pv. tomato GN=rhlB PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11 Identity = 45/131 (34.35%), Postives = 68/131 (51.91%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI-KIHKDLLKNECPPIV 633 F DF L PEL+ AI D GF + + +Q + + G D I +A++G GKTA F++S ++Q P G+ AL++ TREL QI + + Y ++ V F GG++ K K L C +V Sbjct: 10 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKY-TNLNVMTFVGGMDFDKQLKQLEARHCDILV 139
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_YEAST (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae GN=TIF1 PE=1 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11 Identity = 43/107 (40.19%), Postives = 57/107 (53.27%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN 585 F D L LLR + GFE PS +Q I I G DV+ QA+SG GKT F ++ LQ+ + + AL+L TRELA QI + ++ DIKV GG + Sbjct: 24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTS 129
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_YEAS7 (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain YJM789) GN=TIF1 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11 Identity = 43/107 (40.19%), Postives = 57/107 (53.27%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN 585 F D L LLR + GFE PS +Q I I G DV+ QA+SG GKT F ++ LQ+ + + AL+L TRELA QI + ++ DIKV GG + Sbjct: 24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTS 129
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_ASHGO (ATP-dependent RNA helicase eIF4A OS=Ashbya gossypii GN=TIF1 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11 Identity = 48/139 (34.53%), Postives = 68/139 (48.92%), Query Frame = 1 Query: 196 DSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612 DS+ N E +H F + LK LLR I GF PS +Q I I G DV+ QA+SG GKT F ++ LQ+ + + AL+L TRELA QI + ++ D+KV GG + + + L+ Sbjct: 3 DSITNPENSEIQTNYDKIVHK--FDELKLKEVLLRGIYGYGFVDPSAIQQRAILPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDESIKAPQALILAPTRELALQIQKVVMALALHM-DVKVHACIGGTDPREDAEALR 138
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DRS1_VANPO (ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DRS1 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11 Identity = 46/151 (30.46%), Postives = 77/151 (50.99%), Query Frame = 1 Query: 190 APDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTA---LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633 AP+S +++A +HS+ F L +L+ + D G+ PS +Q IP + G D+I A +G GKTA F++ +++ P +V + +VL TRELA QI ++ Y+ + + GG+N++ + LK P IV Sbjct: 217 APESESSEATST--------VHST-FNSLTLSRPVLKGLSDLGYTKPSPIQSATIPIGLSGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKVASTRVIVLTPTRELAIQIADVGKKIGKYVSGLTFGLAVGGLNLRQQEQELKTR-PDIV 357
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DRS1_ASHGO (ATP-dependent RNA helicase DRS1 OS=Ashbya gossypii GN=DRS1 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11 Identity = 44/139 (31.65%), Postives = 72/139 (51.80%), Query Frame = 1 Query: 205 ATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTA---LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612 A GE AK +HS+ F L +L+ + G+ PS +Q IP A+LG DVI A +G GKTA F++ +++ P ++ + LVL TRELA Q+ ++ ++ + + GG+N++ + LK Sbjct: 205 APSNEGEEAKNV---VHST-FNSLSLSRPVLKGLAALGYTKPSPIQGATIPIALLGKDVIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVLVLTPTRELAIQVADVGKKLGKFVSGLTFGLAVGGLNLRQQEQALK 339
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX47_HUMAN (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11 Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN 585 F+D + L A G+ P+++Q E IP A+ G D+I A++G GKT F L L P ++ ALVL TRELA+QI +FE + + ++ AV GG++ Sbjct: 26 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGID 131
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DD19B_HUMAN (ATP-dependent RNA helicase DDX19B OS=Homo sapiens GN=DDX19B PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11 Identity = 38/102 (37.25%), Postives = 56/102 (54.90%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 564 F + LKP+LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L Q EP L L T ELA Q E+ + P++K+A Sbjct: 94 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLA 195 The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bpback to top |