CN181474

Overview
NameCN181474
Unique NameCN181474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:7..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_PICST (ATP-dependent rRNA helicase RRP3 OS=Pichia stipitis GN=RRP3 PE=3 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11
Identity = 41/110 (37.27%), Postives = 57/110 (51.82%), Query Frame = 1
Query:  259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            S F +  L PELL AI    F  P+ +Q E IP A+ G D+I  A++G GKTA F +  LQ           LVL   RELAYQI   F+   + +  ++     GG+++
Sbjct:   71 STFSELKLVPELLEAIQQMKFSKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQTPYFGLVLAPARELAYQIKETFDALGSTM-GVRTVCLVGGMDM 179          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_AJECN (ATP-dependent rRNA helicase RRP3 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RRP3 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11
Identity = 41/111 (36.94%), Postives = 60/111 (54.05%), Query Frame = 1
Query:  256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            +  F+D  +   L  A    G++ P+ +Q E IP A+ G D+I  A++G GKTA F L  LQ     P  +  L+L  TRELA QI   FE   + L  ++ AV  GG+++
Sbjct:   58 TKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMNKPQSLFGLILAPTRELACQISEAFEALGS-LISVRCAVIVGGMDM 167          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RHLB_PSESM (ATP-dependent RNA helicase rhlB OS=Pseudomonas syringae pv. tomato GN=rhlB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11
Identity = 45/131 (34.35%), Postives = 68/131 (51.91%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI-KIHKDLLKNECPPIV 633
            F DF L PEL+ AI D GF + + +Q   +   + G D I +A++G GKTA F++S ++Q    P       G+  AL++  TREL  QI  +    + Y  ++ V  F GG++  K  K L    C  +V
Sbjct:   10 FHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKY-TNLNVMTFVGGMDFDKQLKQLEARHCDILV 139          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_YEAST (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae GN=TIF1 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11
Identity = 43/107 (40.19%), Postives = 57/107 (53.27%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN 585
            F D  L   LLR +   GFE PS +Q   I   I G DV+ QA+SG GKT  F ++ LQ+ + +     AL+L  TRELA QI       + ++ DIKV    GG +
Sbjct:   24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTS 129          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_YEAS7 (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain YJM789) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11
Identity = 43/107 (40.19%), Postives = 57/107 (53.27%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN 585
            F D  L   LLR +   GFE PS +Q   I   I G DV+ QA+SG GKT  F ++ LQ+ + +     AL+L  TRELA QI       + ++ DIKV    GG +
Sbjct:   24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTS 129          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_ASHGO (ATP-dependent RNA helicase eIF4A OS=Ashbya gossypii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11
Identity = 48/139 (34.53%), Postives = 68/139 (48.92%), Query Frame = 1
Query:  196 DSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612
            DS+    N E        +H   F +  LK  LLR I   GF  PS +Q   I   I G DV+ QA+SG GKT  F ++ LQ+ + +     AL+L  TRELA QI       + ++ D+KV    GG + +   + L+
Sbjct:    3 DSITNPENSEIQTNYDKIVHK--FDELKLKEVLLRGIYGYGFVDPSAIQQRAILPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDESIKAPQALILAPTRELALQIQKVVMALALHM-DVKVHACIGGTDPREDAEALR 138          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DRS1_VANPO (ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DRS1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11
Identity = 46/151 (30.46%), Postives = 77/151 (50.99%), Query Frame = 1
Query:  190 APDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTA---LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            AP+S +++A           +HS+ F    L   +L+ + D G+  PS +Q   IP  + G D+I  A +G GKTA F++  +++    P +V +   +VL  TRELA QI    ++   Y+  +   +  GG+N++  +  LK   P IV
Sbjct:  217 APESESSEATST--------VHST-FNSLTLSRPVLKGLSDLGYTKPSPIQSATIPIGLSGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKVASTRVIVLTPTRELAIQIADVGKKIGKYVSGLTFGLAVGGLNLRQQEQELKTR-PDIV 357          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DRS1_ASHGO (ATP-dependent RNA helicase DRS1 OS=Ashbya gossypii GN=DRS1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11
Identity = 44/139 (31.65%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  205 ATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTA---LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612
            A    GE AK     +HS+ F    L   +L+ +   G+  PS +Q   IP A+LG DVI  A +G GKTA F++  +++    P ++ +   LVL  TRELA Q+    ++   ++  +   +  GG+N++  +  LK
Sbjct:  205 APSNEGEEAKNV---VHST-FNSLSLSRPVLKGLAALGYTKPSPIQGATIPIALLGKDVIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVLVLTPTRELAIQVADVGKKLGKFVSGLTFGLAVGGLNLRQQEQALK 339          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX47_HUMAN (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN 585
            F+D  +   L  A    G+  P+++Q E IP A+ G D+I  A++G GKT  F L  L      P ++ ALVL  TRELA+QI  +FE   + +  ++ AV  GG++
Sbjct:   26 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGID 131          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DD19B_HUMAN (ATP-dependent RNA helicase DDX19B OS=Homo sapiens GN=DDX19B PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11
Identity = 38/102 (37.25%), Postives = 56/102 (54.90%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 564
            F +  LKP+LL+ +   GF  PS++Q   +P  +     ++I Q++SG GKTA FVL+ L Q EP       L L  T ELA Q     E+   + P++K+A
Sbjct:   94 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLA 195          
The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
RRP3_PICST1.841e-1137.27ATP-dependent rRNA helicase RRP3 OS=Pichia stipiti... [more]
RRP3_AJECN1.841e-1136.94ATP-dependent rRNA helicase RRP3 OS=Ajellomyces ca... [more]
RHLB_PSESM1.841e-1134.35ATP-dependent RNA helicase rhlB OS=Pseudomonas syr... [more]
IF4A_YEAST1.841e-1140.19ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_YEAS71.841e-1140.19ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_ASHGO1.841e-1134.53ATP-dependent RNA helicase eIF4A OS=Ashbya gossypi... [more]
DRS1_VANPO1.841e-1130.46ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma... [more]
DRS1_ASHGO1.841e-1131.65ATP-dependent RNA helicase DRS1 OS=Ashbya gossypii... [more]
DDX47_HUMAN1.841e-1137.38Probable ATP-dependent RNA helicase DDX47 OS=Homo ... [more]
DD19B_HUMAN1.841e-1137.25ATP-dependent RNA helicase DDX19B OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bp
GAGGATTCTACTCCCTTTCAAATCTTTTTCTCCTTTTATTTTGGCTAATT
ATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCCCAAC
CGTTTATTCAAATACTGGCAGGAATGGGAGAGACAAGAGACAACGAGTAC
GAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGATTC
CGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTA
TACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGT
GCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATG
CATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAG
GGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAG
CCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTT
AGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTG
ATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAA
GATTTGCTGAAAAACGAATGTCCCCCAATTGTTG
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